Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 MIR221-201ENST00000385135 110 ntBASIC2.85□□□□□ -1.95
CHMP4AQ9BY43 MIR1262-201ENST00000408276 93 ntBASIC2.85□□□□□ -1.95
CHMP4AQ9BY43 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC2.85□□□□□ -1.95
CHMP4AQ9BY43 AC132479.1-201ENST00000449160 144 ntBASIC2.85□□□□□ -1.95
CHMP4AQ9BY43 SNORA44.1-201ENST00000517031 108 ntBASIC2.85□□□□□ -1.95
CHMP4AQ9BY43 RNU6-430P-201ENST00000517078 107 ntBASIC2.85□□□□□ -1.95
CHMP4AQ9BY43 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC2.85□□□□□ -1.95
CHMP4AQ9BY43 MTND2P38-201ENST00000522536 667 ntBASIC2.85□□□□□ -1.95
CHMP4AQ9BY43 AP000873.5-201ENST00000533906 236 ntBASIC2.85□□□□□ -1.95
CHMP4AQ9BY43 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC2.85□□□□□ -1.95
CHMP4AQ9BY43 SUB1P2-201ENST00000556401 297 ntBASIC2.85□□□□□ -1.95
CHMP4AQ9BY43 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC2.85□□□□□ -1.95
CHMP4AQ9BY43 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC2.85□□□□□ -1.95
CHMP4AQ9BY43 MIR219B-201ENST00000637023 88 ntBASIC2.85□□□□□ -1.95
CHMP4AQ9BY43 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC2.84□□□□□ -1.95
CHMP4AQ9BY43 RNU6-1127P-201ENST00000384580 107 ntBASIC2.84□□□□□ -1.95
CHMP4AQ9BY43 SNORD70.1-201ENST00000391007 85 ntBASIC2.84□□□□□ -1.95
CHMP4AQ9BY43 RNU11-3P-201ENST00000391111 133 ntBASIC2.84□□□□□ -1.95
CHMP4AQ9BY43 MTATP6P18-201ENST00000417994 673 ntBASIC2.84□□□□□ -1.95
CHMP4AQ9BY43 AC243964.1-201ENST00000441814 261 ntBASIC2.84□□□□□ -1.95
CHMP4AQ9BY43 AC096638.1-201ENST00000444678 216 ntBASIC2.84□□□□□ -1.95
CHMP4AQ9BY43 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC2.84□□□□□ -1.95
CHMP4AQ9BY43 SCARNA16.3-201ENST00000516595 184 ntBASIC2.84□□□□□ -1.95
CHMP4AQ9BY43 AL137161.1-201ENST00000532231 390 ntBASIC2.84□□□□□ -1.95
CHMP4AQ9BY43 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC2.84□□□□□ -1.95
CHMP4AQ9BY43 MIR4528-201ENST00000577763 90 ntBASIC2.84□□□□□ -1.95
CHMP4AQ9BY43 AC009314.1-201ENST00000603871 304 ntBASIC2.84□□□□□ -1.95
CHMP4AQ9BY43 SNORD98-201ENST00000636377 67 ntBASIC2.84□□□□□ -1.95
CHMP4AQ9BY43 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.84□□□□□ -1.96
CHMP4AQ9BY43 MTND5P6-201ENST00000422338 1798 ntBASIC2.84□□□□□ -1.96
CHMP4AQ9BY43 SNORD115-3-201ENST00000363100 82 ntBASIC2.83□□□□□ -1.96
CHMP4AQ9BY43 RNU4-52P-201ENST00000384209 138 ntBASIC2.83□□□□□ -1.96
CHMP4AQ9BY43 MIR676-201ENST00000390702 67 ntBASIC2.83□□□□□ -1.96
CHMP4AQ9BY43 RNU2-9P-201ENST00000410194 145 ntBASIC2.83□□□□□ -1.96
CHMP4AQ9BY43 RNA5SP489-201ENST00000410986 109 ntBASIC2.83□□□□□ -1.96
CHMP4AQ9BY43 RNU6-293P-201ENST00000411259 106 ntBASIC2.83□□□□□ -1.96
CHMP4AQ9BY43 AL162254.1-202ENST00000419604 497 ntTSL 5 BASIC2.83□□□□□ -1.96
CHMP4AQ9BY43 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC2.83□□□□□ -1.96
CHMP4AQ9BY43 AC244670.1-201ENST00000436879 112 ntBASIC2.83□□□□□ -1.96
CHMP4AQ9BY43 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC2.83□□□□□ -1.96
CHMP4AQ9BY43 AL031659.1-201ENST00000447075 539 ntBASIC2.83□□□□□ -1.96
CHMP4AQ9BY43 AC005741.1-201ENST00000511094 432 ntBASIC2.83□□□□□ -1.96
CHMP4AQ9BY43 Y_RNA.688-201ENST00000516565 95 ntBASIC2.83□□□□□ -1.96
CHMP4AQ9BY43 AC027807.1-201ENST00000559921 996 ntBASIC2.83□□□□□ -1.96
CHMP4AQ9BY43 MIR4448-201ENST00000584360 86 ntBASIC2.83□□□□□ -1.96
CHMP4AQ9BY43 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC2.83□□□□□ -1.96
CHMP4AQ9BY43 U2.17-201ENST00000611454 95 ntBASIC2.83□□□□□ -1.96
CHMP4AQ9BY43 SRP54-214ENST00000630962 162 ntTSL 5 BASIC2.83□□□□□ -1.96
CHMP4AQ9BY43 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
CHMP4AQ9BY43 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC2.82□□□□□ -1.96
CHMP4AQ9BY43 TXNDC8-203ENST00000374511 472 ntAPPRIS ALT2 TSL 5 BASIC2.82□□□□□ -1.96
CHMP4AQ9BY43 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
CHMP4AQ9BY43 SNORA11.4-201ENST00000408823 129 ntBASIC2.82□□□□□ -1.96
CHMP4AQ9BY43 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC2.82□□□□□ -1.96
CHMP4AQ9BY43 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC2.82□□□□□ -1.96
CHMP4AQ9BY43 AC000123.1-201ENST00000418215 516 ntTSL 5 BASIC2.82□□□□□ -1.96
CHMP4AQ9BY43 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC2.82□□□□□ -1.96
CHMP4AQ9BY43 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC2.82□□□□□ -1.96
CHMP4AQ9BY43 AC002486.1-201ENST00000435098 391 ntBASIC2.82□□□□□ -1.96
CHMP4AQ9BY43 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
CHMP4AQ9BY43 AP000431.2-201ENST00000450653 790 ntTSL 2 BASIC2.82□□□□□ -1.96
CHMP4AQ9BY43 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC2.82□□□□□ -1.96
CHMP4AQ9BY43 AC016632.1-201ENST00000503994 196 ntBASIC2.82□□□□□ -1.96
CHMP4AQ9BY43 AC093259.1-201ENST00000509755 300 ntBASIC2.82□□□□□ -1.96
CHMP4AQ9BY43 AGGF1P4-201ENST00000568249 801 ntBASIC2.82□□□□□ -1.96
CHMP4AQ9BY43 AC110760.3-201ENST00000598794 467 ntBASIC2.82□□□□□ -1.96
CHMP4AQ9BY43 AC008536.2-201ENST00000607284 349 ntBASIC2.82□□□□□ -1.96
CHMP4AQ9BY43 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC2.82□□□□□ -1.96
CHMP4AQ9BY43 ZNF355P-201ENST00000427301 3216 ntBASIC2.81□□□□□ -1.96
CHMP4AQ9BY43 MIRLET7G-201ENST00000362280 84 ntBASIC2.81□□□□□ -1.96
CHMP4AQ9BY43 SNORD32B-201ENST00000364460 84 ntBASIC2.81□□□□□ -1.96
CHMP4AQ9BY43 Y_RNA.553-201ENST00000384670 102 ntBASIC2.81□□□□□ -1.96
CHMP4AQ9BY43 AL117339.3-201ENST00000418733 162 ntBASIC2.81□□□□□ -1.96
CHMP4AQ9BY43 HMGN2P3-201ENST00000433603 273 ntBASIC2.81□□□□□ -1.96
CHMP4AQ9BY43 HMGN2P5-201ENST00000436882 273 ntBASIC2.81□□□□□ -1.96
CHMP4AQ9BY43 MTCO2P16-201ENST00000436962 677 ntBASIC2.81□□□□□ -1.96
CHMP4AQ9BY43 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC2.81□□□□□ -1.96
CHMP4AQ9BY43 AL035666.1-201ENST00000446195 348 ntBASIC2.81□□□□□ -1.96
CHMP4AQ9BY43 SCARNA18-201ENST00000459004 134 ntBASIC2.81□□□□□ -1.96
CHMP4AQ9BY43 RNU7-167P-201ENST00000459160 62 ntBASIC2.81□□□□□ -1.96
CHMP4AQ9BY43 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC2.81□□□□□ -1.96
CHMP4AQ9BY43 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC2.81□□□□□ -1.96
CHMP4AQ9BY43 ANXA2P1-201ENST00000505539 926 ntBASIC2.81□□□□□ -1.96
CHMP4AQ9BY43 AC010424.1-201ENST00000506336 297 ntBASIC2.81□□□□□ -1.96
CHMP4AQ9BY43 RNU1-41P-201ENST00000516161 162 ntBASIC2.81□□□□□ -1.96
CHMP4AQ9BY43 RNU1-48P-201ENST00000516400 162 ntBASIC2.81□□□□□ -1.96
CHMP4AQ9BY43 RNU6-965P-201ENST00000516721 96 ntBASIC2.81□□□□□ -1.96
CHMP4AQ9BY43 AC022880.1-201ENST00000534017 973 ntBASIC2.81□□□□□ -1.96
CHMP4AQ9BY43 MIR3198-2-201ENST00000577868 80 ntBASIC2.81□□□□□ -1.96
CHMP4AQ9BY43 AC010620.1-201ENST00000601088 1102 ntBASIC2.81□□□□□ -1.96
CHMP4AQ9BY43 AC116312.1-201ENST00000606841 314 ntBASIC2.81□□□□□ -1.96
CHMP4AQ9BY43 AL136221.1-201ENST00000621449 509 ntBASIC2.81□□□□□ -1.96
CHMP4AQ9BY43 AC130454.1-201ENST00000622948 401 ntBASIC2.81□□□□□ -1.96
CHMP4AQ9BY43 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
CHMP4AQ9BY43 WWP1P1-201ENST00000466609 2769 ntBASIC2.81□□□□□ -1.96
CHMP4AQ9BY43 Y_RNA.77-201ENST00000362962 107 ntBASIC2.8□□□□□ -1.96
CHMP4AQ9BY43 RNU6-336P-201ENST00000364891 107 ntBASIC2.8□□□□□ -1.96
CHMP4AQ9BY43 SNORA75-201ENST00000384158 137 ntBASIC2.8□□□□□ -1.96
CHMP4AQ9BY43 RNU6-43P-201ENST00000384302 107 ntBASIC2.8□□□□□ -1.96
CHMP4AQ9BY43 SNORA26.3-201ENST00000391119 136 ntBASIC2.8□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 108.7 ms