Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AL353705.4-201ENST00000449661 238 ntBASIC2.36□□□□□ -2.03
CCDC3Q9BQI4 AL627309.4-201ENST00000496488 457 ntTSL 5 BASIC2.36□□□□□ -2.03
CCDC3Q9BQI4 MTCYBP18-201ENST00000501056 747 ntBASIC2.36□□□□□ -2.03
CCDC3Q9BQI4 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC2.36□□□□□ -2.03
CCDC3Q9BQI4 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC2.36□□□□□ -2.03
CCDC3Q9BQI4 AC060766.3-201ENST00000591442 263 ntBASIC2.36□□□□□ -2.03
CCDC3Q9BQI4 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC2.36□□□□□ -2.03
CCDC3Q9BQI4 AL449363.1-201ENST00000617815 186 ntBASIC2.36□□□□□ -2.03
CCDC3Q9BQI4 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC2.36□□□□□ -2.03
CCDC3Q9BQI4 SNORD114-19-201ENST00000363072 75 ntBASIC2.35□□□□□ -2.03
CCDC3Q9BQI4 RN7SKP223-201ENST00000410582 62 ntBASIC2.35□□□□□ -2.03
CCDC3Q9BQI4 AC007064.1-201ENST00000412238 351 ntBASIC2.35□□□□□ -2.03
CCDC3Q9BQI4 AC009161.1-201ENST00000417306 376 ntBASIC2.35□□□□□ -2.03
CCDC3Q9BQI4 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC2.35□□□□□ -2.03
CCDC3Q9BQI4 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC2.35□□□□□ -2.03
CCDC3Q9BQI4 AL591043.1-201ENST00000432461 424 ntBASIC2.35□□□□□ -2.03
CCDC3Q9BQI4 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC2.35□□□□□ -2.03
CCDC3Q9BQI4 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC2.35□□□□□ -2.03
CCDC3Q9BQI4 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC2.35□□□□□ -2.03
CCDC3Q9BQI4 RNU7-66P-201ENST00000459469 62 ntBASIC2.35□□□□□ -2.03
CCDC3Q9BQI4 RPL36AP48-201ENST00000485521 314 ntBASIC2.35□□□□□ -2.03
CCDC3Q9BQI4 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC2.35□□□□□ -2.03
CCDC3Q9BQI4 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC2.35□□□□□ -2.03
CCDC3Q9BQI4 AC010186.2-204ENST00000537668 439 ntBASIC2.35□□□□□ -2.03
CCDC3Q9BQI4 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC2.35□□□□□ -2.03
CCDC3Q9BQI4 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC2.35□□□□□ -2.03
CCDC3Q9BQI4 PSMA4-204ENST00000558094 651 ntTSL 3 BASIC2.35□□□□□ -2.03
CCDC3Q9BQI4 AC060780.3-201ENST00000589464 80 ntBASIC2.35□□□□□ -2.03
CCDC3Q9BQI4 FAM157A-202ENST00000615155 405 ntBASIC2.35□□□□□ -2.03
CCDC3Q9BQI4 MIR7843-201ENST00000622274 79 ntBASIC2.35□□□□□ -2.03
CCDC3Q9BQI4 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC2.35□□□□□ -2.03
CCDC3Q9BQI4 AC002543.1-201ENST00000299783 1954 ntBASIC2.35□□□□□ -2.03
CCDC3Q9BQI4 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.35□□□□□ -2.03
CCDC3Q9BQI4 MTND4P27-201ENST00000450813 1354 ntBASIC2.35□□□□□ -2.03
CCDC3Q9BQI4 AC080128.1-201ENST00000474389 1917 ntBASIC2.34□□□□□ -2.03
CCDC3Q9BQI4 RNU6-529P-201ENST00000363383 104 ntBASIC2.34□□□□□ -2.03
CCDC3Q9BQI4 RNU6-1329P-201ENST00000365664 107 ntBASIC2.34□□□□□ -2.03
CCDC3Q9BQI4 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC2.34□□□□□ -2.03
CCDC3Q9BQI4 RNU2-23P-201ENST00000410545 195 ntBASIC2.34□□□□□ -2.03
CCDC3Q9BQI4 BX276092.3-201ENST00000424182 230 ntBASIC2.34□□□□□ -2.03
CCDC3Q9BQI4 UBE2V1P4-201ENST00000425374 344 ntBASIC2.34□□□□□ -2.03
CCDC3Q9BQI4 SUMO1P4-201ENST00000429430 302 ntBASIC2.34□□□□□ -2.03
CCDC3Q9BQI4 AL356320.1-201ENST00000429616 163 ntBASIC2.34□□□□□ -2.03
CCDC3Q9BQI4 RPS12P2-201ENST00000439728 269 ntBASIC2.34□□□□□ -2.03
CCDC3Q9BQI4 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC2.34□□□□□ -2.03
CCDC3Q9BQI4 AC124916.1-201ENST00000444020 547 ntBASIC2.34□□□□□ -2.03
CCDC3Q9BQI4 AC012308.1-201ENST00000451232 178 ntBASIC2.34□□□□□ -2.03
CCDC3Q9BQI4 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC2.34□□□□□ -2.03
CCDC3Q9BQI4 snoU13.15-201ENST00000459407 104 ntBASIC2.34□□□□□ -2.03
CCDC3Q9BQI4 AC083904.1-201ENST00000487828 231 ntBASIC2.34□□□□□ -2.03
CCDC3Q9BQI4 AC090096.1-201ENST00000489168 390 ntBASIC2.34□□□□□ -2.03
CCDC3Q9BQI4 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC2.34□□□□□ -2.03
CCDC3Q9BQI4 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC2.34□□□□□ -2.03
CCDC3Q9BQI4 POC1B-211ENST00000549504 581 ntTSL 5 BASIC2.34□□□□□ -2.03
CCDC3Q9BQI4 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC2.34□□□□□ -2.03
CCDC3Q9BQI4 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC2.34□□□□□ -2.03
CCDC3Q9BQI4 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC2.34□□□□□ -2.03
CCDC3Q9BQI4 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC2.34□□□□□ -2.03
CCDC3Q9BQI4 MIR4648-201ENST00000580107 72 ntBASIC2.34□□□□□ -2.03
CCDC3Q9BQI4 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC2.34□□□□□ -2.03
CCDC3Q9BQI4 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC2.34□□□□□ -2.03
CCDC3Q9BQI4 MIR5194-201ENST00000582634 120 ntBASIC2.34□□□□□ -2.03
CCDC3Q9BQI4 AC018638.8-201ENST00000588755 281 ntBASIC2.34□□□□□ -2.03
CCDC3Q9BQI4 AL356280.1-201ENST00000603614 379 ntBASIC2.34□□□□□ -2.03
CCDC3Q9BQI4 AC046143.2-201ENST00000609789 160 ntBASIC2.34□□□□□ -2.03
CCDC3Q9BQI4 AL121757.2-201ENST00000611223 313 ntBASIC2.34□□□□□ -2.03
CCDC3Q9BQI4 AL159153.1-201ENST00000619688 317 ntBASIC2.34□□□□□ -2.03
CCDC3Q9BQI4 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC2.34□□□□□ -2.04
CCDC3Q9BQI4 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
CCDC3Q9BQI4 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
CCDC3Q9BQI4 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC2.33□□□□□ -2.04
CCDC3Q9BQI4 OR56A5-201ENST00000340110 738 ntBASIC2.33□□□□□ -2.04
CCDC3Q9BQI4 RNU1-138P-201ENST00000384093 164 ntBASIC2.33□□□□□ -2.04
CCDC3Q9BQI4 MIR504-201ENST00000385065 83 ntBASIC2.33□□□□□ -2.04
CCDC3Q9BQI4 RNU6-1106P-201ENST00000390845 107 ntBASIC2.33□□□□□ -2.04
CCDC3Q9BQI4 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
CCDC3Q9BQI4 AC006333.1-201ENST00000422401 410 ntTSL 3 BASIC2.33□□□□□ -2.04
CCDC3Q9BQI4 MTND1P2-201ENST00000430604 821 ntBASIC2.33□□□□□ -2.04
CCDC3Q9BQI4 Z98742.2-201ENST00000431564 187 ntBASIC2.33□□□□□ -2.04
CCDC3Q9BQI4 AL645568.3-201ENST00000433683 316 ntBASIC2.33□□□□□ -2.04
CCDC3Q9BQI4 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC2.33□□□□□ -2.04
CCDC3Q9BQI4 RNU6-1037P-201ENST00000459571 107 ntBASIC2.33□□□□□ -2.04
CCDC3Q9BQI4 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC2.33□□□□□ -2.04
CCDC3Q9BQI4 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC2.33□□□□□ -2.04
CCDC3Q9BQI4 RNA5SP281-201ENST00000516504 135 ntBASIC2.33□□□□□ -2.04
CCDC3Q9BQI4 RNU6-1314P-201ENST00000517139 104 ntBASIC2.33□□□□□ -2.04
CCDC3Q9BQI4 RNU1-104P-201ENST00000517280 175 ntBASIC2.33□□□□□ -2.04
CCDC3Q9BQI4 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC2.33□□□□□ -2.04
CCDC3Q9BQI4 RNU6-323P-201ENST00000521915 107 ntBASIC2.33□□□□□ -2.04
CCDC3Q9BQI4 AP005597.4-201ENST00000526762 229 ntBASIC2.33□□□□□ -2.04
CCDC3Q9BQI4 AL049779.4-201ENST00000604500 156 ntBASIC2.33□□□□□ -2.04
CCDC3Q9BQI4 AC103810.6-201ENST00000606708 136 ntBASIC2.33□□□□□ -2.04
CCDC3Q9BQI4 AL357078.3-201ENST00000607528 618 ntBASIC2.33□□□□□ -2.04
CCDC3Q9BQI4 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC2.33□□□□□ -2.04
CCDC3Q9BQI4 AC007792.1-201ENST00000623023 402 ntBASIC2.33□□□□□ -2.04
CCDC3Q9BQI4 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.33□□□□□ -2.04
CCDC3Q9BQI4 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
CCDC3Q9BQI4 Z75746.1-201ENST00000440243 2080 ntBASIC2.33□□□□□ -2.04
CCDC3Q9BQI4 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC2.33□□□□□ -2.04
CCDC3Q9BQI4 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC2.33□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 87.9 ms