Protein–RNA interactions for Protein: Q99250

SCN2A, Sodium channel protein type 2 subunit alpha, humanhuman

Predictions only

Length 2,005 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN2AQ99250 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC1.76□□□□□ -2.13
SCN2AQ99250 AP005435.4-201ENST00000529514 284 ntBASIC1.76□□□□□ -2.13
SCN2AQ99250 AC021231.3-201ENST00000558497 370 ntBASIC1.76□□□□□ -2.13
SCN2AQ99250 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC1.76□□□□□ -2.13
SCN2AQ99250 AC073539.2-201ENST00000597113 165 ntBASIC1.76□□□□□ -2.13
SCN2AQ99250 VN1R80P-201ENST00000597126 338 ntBASIC1.76□□□□□ -2.13
SCN2AQ99250 AC022418.1-201ENST00000624118 445 ntBASIC1.76□□□□□ -2.13
SCN2AQ99250 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC1.76□□□□□ -2.13
SCN2AQ99250 ZNF680P1-201ENST00000436625 1469 ntBASIC1.75□□□□□ -2.13
SCN2AQ99250 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC1.75□□□□□ -2.13
SCN2AQ99250 SNORD115-7-201ENST00000365306 82 ntBASIC1.75□□□□□ -2.13
SCN2AQ99250 RNU6-74P-201ENST00000384235 107 ntBASIC1.75□□□□□ -2.13
SCN2AQ99250 RNU6-43P-201ENST00000384302 107 ntBASIC1.75□□□□□ -2.13
SCN2AQ99250 RNU6-1127P-201ENST00000384580 107 ntBASIC1.75□□□□□ -2.13
SCN2AQ99250 AC074117.2-201ENST00000417130 397 ntBASIC1.75□□□□□ -2.13
SCN2AQ99250 FABP5P14-201ENST00000437273 393 ntBASIC1.75□□□□□ -2.13
SCN2AQ99250 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC1.75□□□□□ -2.13
SCN2AQ99250 RNU6-123P-201ENST00000516163 102 ntBASIC1.75□□□□□ -2.13
SCN2AQ99250 RNU6-1178P-201ENST00000516674 107 ntBASIC1.75□□□□□ -2.13
SCN2AQ99250 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC1.75□□□□□ -2.13
SCN2AQ99250 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC1.75□□□□□ -2.13
SCN2AQ99250 AP000462.2-203ENST00000540545 715 ntTSL 5 BASIC1.75□□□□□ -2.13
SCN2AQ99250 AC009269.3-201ENST00000558429 472 ntTSL 5 BASIC1.75□□□□□ -2.13
SCN2AQ99250 AC092325.1-201ENST00000566449 554 ntBASIC1.75□□□□□ -2.13
SCN2AQ99250 AC044840.1-201ENST00000577641 472 ntTSL 3 BASIC1.75□□□□□ -2.13
SCN2AQ99250 DISC2.1-201ENST00000612827 205 ntBASIC1.75□□□□□ -2.13
SCN2AQ99250 AC026585.1-201ENST00000619582 524 ntBASIC1.75□□□□□ -2.13
SCN2AQ99250 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC1.75□□□□□ -2.13
SCN2AQ99250 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC1.75□□□□□ -2.13
SCN2AQ99250 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC1.74□□□□□ -2.13
SCN2AQ99250 Y_RNA.38-201ENST00000362617 102 ntBASIC1.74□□□□□ -2.13
SCN2AQ99250 MIR10A-201ENST00000385043 110 ntBASIC1.74□□□□□ -2.13
SCN2AQ99250 SNORD70.1-201ENST00000391007 85 ntBASIC1.74□□□□□ -2.13
SCN2AQ99250 RNU6-192P-201ENST00000391253 100 ntBASIC1.74□□□□□ -2.13
SCN2AQ99250 CALM2P3-201ENST00000400429 449 ntBASIC1.74□□□□□ -2.13
SCN2AQ99250 OR9R1P-201ENST00000412200 877 ntBASIC1.74□□□□□ -2.13
SCN2AQ99250 MTCO3P41-201ENST00000414801 328 ntBASIC1.74□□□□□ -2.13
SCN2AQ99250 AC104777.3-201ENST00000416350 545 ntTSL 3 BASIC1.74□□□□□ -2.13
SCN2AQ99250 AL445989.1-202ENST00000418943 776 ntTSL 2 BASIC1.74□□□□□ -2.13
SCN2AQ99250 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC1.74□□□□□ -2.13
SCN2AQ99250 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC1.74□□□□□ -2.13
SCN2AQ99250 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC1.74□□□□□ -2.13
SCN2AQ99250 AMD1P1-201ENST00000457220 922 ntBASIC1.74□□□□□ -2.13
SCN2AQ99250 TPTE2P5-203ENST00000458118 728 ntBASIC1.74□□□□□ -2.13
SCN2AQ99250 snoU109.2-201ENST00000459316 135 ntBASIC1.74□□□□□ -2.13
SCN2AQ99250 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC1.74□□□□□ -2.13
SCN2AQ99250 AF213884.2-201ENST00000510417 903 ntBASIC1.74□□□□□ -2.13
SCN2AQ99250 AC107393.1-201ENST00000512403 346 ntBASIC1.74□□□□□ -2.13
SCN2AQ99250 LRRC34P2-201ENST00000514850 553 ntBASIC1.74□□□□□ -2.13
SCN2AQ99250 SNORA25.11-201ENST00000515935 105 ntBASIC1.74□□□□□ -2.13
SCN2AQ99250 AC023050.3-201ENST00000541142 333 ntBASIC1.74□□□□□ -2.13
SCN2AQ99250 AC110588.1-201ENST00000559699 137 ntBASIC1.74□□□□□ -2.13
SCN2AQ99250 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC1.74□□□□□ -2.13
SCN2AQ99250 AC104581.2-201ENST00000572227 430 ntBASIC1.74□□□□□ -2.13
SCN2AQ99250 MIR4255-201ENST00000579351 72 ntBASIC1.74□□□□□ -2.13
SCN2AQ99250 BNIP3P16-201ENST00000589779 534 ntBASIC1.74□□□□□ -2.13
SCN2AQ99250 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC1.74□□□□□ -2.13
SCN2AQ99250 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC1.74□□□□□ -2.13
SCN2AQ99250 AL159153.1-201ENST00000619688 317 ntBASIC1.74□□□□□ -2.13
SCN2AQ99250 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC1.74□□□□□ -2.13
SCN2AQ99250 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC1.74□□□□□ -2.13
SCN2AQ99250 AC080128.1-201ENST00000474389 1917 ntBASIC1.74□□□□□ -2.13
SCN2AQ99250 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC1.74□□□□□ -2.13
SCN2AQ99250 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC1.74□□□□□ -2.13
SCN2AQ99250 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC1.74□□□□□ -2.13
SCN2AQ99250 KPNA2P1-201ENST00000458289 1591 ntBASIC1.74□□□□□ -2.13
SCN2AQ99250 AC138393.1-203ENST00000327086 343 ntBASIC1.74□□□□□ -2.13
SCN2AQ99250 SNORD73A-201ENST00000386062 65 ntBASIC1.74□□□□□ -2.13
SCN2AQ99250 RNU6-780P-201ENST00000391030 104 ntBASIC1.74□□□□□ -2.13
SCN2AQ99250 RNU6-648P-201ENST00000410190 107 ntBASIC1.74□□□□□ -2.13
SCN2AQ99250 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC1.74□□□□□ -2.13
SCN2AQ99250 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC1.74□□□□□ -2.13
SCN2AQ99250 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC1.74□□□□□ -2.13
SCN2AQ99250 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC1.74□□□□□ -2.13
SCN2AQ99250 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC1.74□□□□□ -2.13
SCN2AQ99250 RPL30P12-201ENST00000474666 353 ntBASIC1.74□□□□□ -2.13
SCN2AQ99250 AL163973.1-201ENST00000484753 577 ntBASIC1.74□□□□□ -2.13
SCN2AQ99250 AP001025.1-201ENST00000486139 332 ntBASIC1.74□□□□□ -2.13
SCN2AQ99250 AC132942.1-201ENST00000486753 483 ntBASIC1.74□□□□□ -2.13
SCN2AQ99250 AC090096.1-201ENST00000489168 390 ntBASIC1.74□□□□□ -2.13
SCN2AQ99250 RBBP4P6-201ENST00000508098 202 ntBASIC1.74□□□□□ -2.13
SCN2AQ99250 HSPE1P18-201ENST00000517602 280 ntBASIC1.74□□□□□ -2.13
SCN2AQ99250 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC1.74□□□□□ -2.13
SCN2AQ99250 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC1.74□□□□□ -2.13
SCN2AQ99250 AP000942.3-201ENST00000603702 160 ntBASIC1.74□□□□□ -2.13
SCN2AQ99250 MIR7111-201ENST00000619751 72 ntBASIC1.74□□□□□ -2.13
SCN2AQ99250 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC1.74□□□□□ -2.13
SCN2AQ99250 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC1.73□□□□□ -2.13
SCN2AQ99250 Y_RNA.164-201ENST00000363709 102 ntBASIC1.73□□□□□ -2.13
SCN2AQ99250 RNU6-105P-201ENST00000363909 104 ntBASIC1.73□□□□□ -2.13
SCN2AQ99250 RNU6-1317P-201ENST00000364582 104 ntBASIC1.73□□□□□ -2.13
SCN2AQ99250 SNORD116-4-201ENST00000384733 96 ntBASIC1.73□□□□□ -2.13
SCN2AQ99250 Y_RNA.582-201ENST00000391023 95 ntBASIC1.73□□□□□ -2.13
SCN2AQ99250 RNU6-1068P-201ENST00000410958 103 ntBASIC1.73□□□□□ -2.13
SCN2AQ99250 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC1.73□□□□□ -2.13
SCN2AQ99250 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC1.73□□□□□ -2.13
SCN2AQ99250 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC1.73□□□□□ -2.13
SCN2AQ99250 RPS15AP10-201ENST00000432472 382 ntBASIC1.73□□□□□ -2.13
SCN2AQ99250 AL645568.3-201ENST00000433683 316 ntBASIC1.73□□□□□ -2.13
SCN2AQ99250 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC1.73□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 105.3 ms