Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 Y_RNA.480-201ENST00000384364 102 ntBASIC1.88□□□□□ -2.11
VPS35Q96QK1 MIR1262-201ENST00000408276 93 ntBASIC1.88□□□□□ -2.11
VPS35Q96QK1 Y_RNA.597-201ENST00000410463 100 ntBASIC1.88□□□□□ -2.11
VPS35Q96QK1 RN7SKP284-201ENST00000411002 343 ntBASIC1.88□□□□□ -2.11
VPS35Q96QK1 SNORD56-201ENST00000413522 71 ntBASIC1.88□□□□□ -2.11
VPS35Q96QK1 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC1.88□□□□□ -2.11
VPS35Q96QK1 MTATP6P18-201ENST00000417994 673 ntBASIC1.88□□□□□ -2.11
VPS35Q96QK1 EIF1AXP1-201ENST00000419267 435 ntBASIC1.88□□□□□ -2.11
VPS35Q96QK1 MTCO2P34-201ENST00000421994 607 ntBASIC1.88□□□□□ -2.11
VPS35Q96QK1 CETN4P-201ENST00000432407 469 ntBASIC1.88□□□□□ -2.11
VPS35Q96QK1 DNAJC19P4-201ENST00000440115 345 ntBASIC1.88□□□□□ -2.11
VPS35Q96QK1 OFD1P4Y-201ENST00000455273 1179 ntBASIC1.88□□□□□ -2.11
VPS35Q96QK1 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC1.88□□□□□ -2.11
VPS35Q96QK1 AC079382.1-201ENST00000493346 557 ntBASIC1.88□□□□□ -2.11
VPS35Q96QK1 YWHAEP4-201ENST00000505390 198 ntBASIC1.88□□□□□ -2.11
VPS35Q96QK1 AC107393.1-201ENST00000512403 346 ntBASIC1.88□□□□□ -2.11
VPS35Q96QK1 AC109479.2-201ENST00000517842 174 ntBASIC1.88□□□□□ -2.11
VPS35Q96QK1 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC1.88□□□□□ -2.11
VPS35Q96QK1 IL7-206ENST00000520269 456 ntTSL 3 BASIC1.88□□□□□ -2.11
VPS35Q96QK1 AC115990.1-201ENST00000526957 301 ntBASIC1.88□□□□□ -2.11
VPS35Q96QK1 AP005435.4-201ENST00000529514 284 ntBASIC1.88□□□□□ -2.11
VPS35Q96QK1 LINC02461-201ENST00000553211 836 ntTSL 3 BASIC1.88□□□□□ -2.11
VPS35Q96QK1 AL158211.1-201ENST00000566763 763 ntBASIC1.88□□□□□ -2.11
VPS35Q96QK1 MIR4528-201ENST00000577763 90 ntBASIC1.88□□□□□ -2.11
VPS35Q96QK1 Z99497.2-201ENST00000603634 310 ntBASIC1.88□□□□□ -2.11
VPS35Q96QK1 AC116312.1-201ENST00000606841 314 ntBASIC1.88□□□□□ -2.11
VPS35Q96QK1 AL627230.6-201ENST00000611129 280 ntBASIC1.88□□□□□ -2.11
VPS35Q96QK1 TMEM154-204ENST00000613578 486 ntAPPRIS ALT2 TSL 5 BASIC1.88□□□□□ -2.11
VPS35Q96QK1 AC063943.3-201ENST00000615562 356 ntBASIC1.88□□□□□ -2.11
VPS35Q96QK1 DUXAP9-208ENST00000622815 614 ntBASIC1.88□□□□□ -2.11
VPS35Q96QK1 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC1.87□□□□□ -2.11
VPS35Q96QK1 RNU2-29P-201ENST00000410423 189 ntBASIC1.87□□□□□ -2.11
VPS35Q96QK1 AL590556.1-201ENST00000423231 483 ntBASIC1.87□□□□□ -2.11
VPS35Q96QK1 AL590730.1-201ENST00000426283 398 ntTSL 3 BASIC1.87□□□□□ -2.11
VPS35Q96QK1 HMGN2P3-201ENST00000433603 273 ntBASIC1.87□□□□□ -2.11
VPS35Q96QK1 HMGN2P5-201ENST00000436882 273 ntBASIC1.87□□□□□ -2.11
VPS35Q96QK1 ATP8A2P2-201ENST00000437678 1568 ntBASIC1.87□□□□□ -2.11
VPS35Q96QK1 AL353689.1-201ENST00000438895 199 ntBASIC1.87□□□□□ -2.11
VPS35Q96QK1 MTND1P26-201ENST00000440488 538 ntBASIC1.87□□□□□ -2.11
VPS35Q96QK1 AC243964.1-201ENST00000441814 261 ntBASIC1.87□□□□□ -2.11
VPS35Q96QK1 AC010095.1-201ENST00000443543 144 ntBASIC1.87□□□□□ -2.11
VPS35Q96QK1 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC1.87□□□□□ -2.11
VPS35Q96QK1 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC1.87□□□□□ -2.11
VPS35Q96QK1 FDX1P2-201ENST00000450769 375 ntBASIC1.87□□□□□ -2.11
VPS35Q96QK1 PMCHL2-203ENST00000457791 237 ntBASIC1.87□□□□□ -2.11
VPS35Q96QK1 SCARNA18-201ENST00000459004 134 ntBASIC1.87□□□□□ -2.11
VPS35Q96QK1 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC1.87□□□□□ -2.11
VPS35Q96QK1 RNU5F-2P-201ENST00000516066 82 ntBASIC1.87□□□□□ -2.11
VPS35Q96QK1 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC1.87□□□□□ -2.11
VPS35Q96QK1 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC1.87□□□□□ -2.11
VPS35Q96QK1 SNRPGP19-201ENST00000603826 189 ntBASIC1.87□□□□□ -2.11
VPS35Q96QK1 AC002044.1-201ENST00000606707 158 ntBASIC1.87□□□□□ -2.11
VPS35Q96QK1 AP001596.2-201ENST00000608410 312 ntBASIC1.87□□□□□ -2.11
VPS35Q96QK1 AC104073.3-201ENST00000610942 955 ntBASIC1.87□□□□□ -2.11
VPS35Q96QK1 AC136475.10-201ENST00000620253 385 ntBASIC1.87□□□□□ -2.11
VPS35Q96QK1 CD44-239ENST00000639002 528 ntTSL 1 (best) BASIC1.87□□□□□ -2.11
VPS35Q96QK1 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.86□□□□□ -2.11
VPS35Q96QK1 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC1.86□□□□□ -2.11
VPS35Q96QK1 RNU6-428P-201ENST00000362942 107 ntBASIC1.86□□□□□ -2.11
VPS35Q96QK1 RNU6-1120P-201ENST00000362988 108 ntBASIC1.86□□□□□ -2.11
VPS35Q96QK1 RNU6-1285P-201ENST00000363480 105 ntBASIC1.86□□□□□ -2.11
VPS35Q96QK1 Y_RNA.159-201ENST00000363674 87 ntBASIC1.86□□□□□ -2.11
VPS35Q96QK1 RNU6-743P-201ENST00000364151 106 ntBASIC1.86□□□□□ -2.11
VPS35Q96QK1 RNU6-336P-201ENST00000364891 107 ntBASIC1.86□□□□□ -2.11
VPS35Q96QK1 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC1.86□□□□□ -2.11
VPS35Q96QK1 SNORD14D-201ENST00000384390 87 ntBASIC1.86□□□□□ -2.11
VPS35Q96QK1 MIR29C-201ENST00000385231 88 ntBASIC1.86□□□□□ -2.11
VPS35Q96QK1 U8.13-201ENST00000390842 128 ntBASIC1.86□□□□□ -2.11
VPS35Q96QK1 BTF3L4P2-201ENST00000392798 346 ntBASIC1.86□□□□□ -2.11
VPS35Q96QK1 RNU6-293P-201ENST00000411259 106 ntBASIC1.86□□□□□ -2.11
VPS35Q96QK1 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC1.86□□□□□ -2.11
VPS35Q96QK1 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC1.86□□□□□ -2.11
VPS35Q96QK1 IFNA20P-201ENST00000436840 528 ntBASIC1.86□□□□□ -2.11
VPS35Q96QK1 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC1.86□□□□□ -2.11
VPS35Q96QK1 RPL23AP3-201ENST00000453844 468 ntBASIC1.86□□□□□ -2.11
VPS35Q96QK1 AL356010.1-201ENST00000456364 102 ntBASIC1.86□□□□□ -2.11
VPS35Q96QK1 RNU6-956P-201ENST00000458868 103 ntBASIC1.86□□□□□ -2.11
VPS35Q96QK1 HMGB3P17-201ENST00000504195 649 ntBASIC1.86□□□□□ -2.11
VPS35Q96QK1 AC105417.1-201ENST00000514691 285 ntBASIC1.86□□□□□ -2.11
VPS35Q96QK1 RN7SKP219-201ENST00000516825 296 ntBASIC1.86□□□□□ -2.11
VPS35Q96QK1 SNORA25.17-201ENST00000517184 124 ntBASIC1.86□□□□□ -2.11
VPS35Q96QK1 AC022880.1-201ENST00000534017 973 ntBASIC1.86□□□□□ -2.11
VPS35Q96QK1 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC1.86□□□□□ -2.11
VPS35Q96QK1 AC110588.1-201ENST00000559699 137 ntBASIC1.86□□□□□ -2.11
VPS35Q96QK1 MTCO3P23-201ENST00000561363 289 ntBASIC1.86□□□□□ -2.11
VPS35Q96QK1 AC008752.3-201ENST00000588113 712 ntBASIC1.86□□□□□ -2.11
VPS35Q96QK1 BNIP3P16-201ENST00000589779 534 ntBASIC1.86□□□□□ -2.11
VPS35Q96QK1 RSL24D1P11-201ENST00000591045 491 ntBASIC1.86□□□□□ -2.11
VPS35Q96QK1 AL158827.2-201ENST00000602494 330 ntBASIC1.86□□□□□ -2.11
VPS35Q96QK1 AL359314.1-201ENST00000616913 261 ntBASIC1.86□□□□□ -2.11
VPS35Q96QK1 Z69908.1-201ENST00000622603 247 ntBASIC1.86□□□□□ -2.11
VPS35Q96QK1 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC1.86□□□□□ -2.11
VPS35Q96QK1 AL691447.3-201ENST00000635020 330 ntBASIC1.86□□□□□ -2.11
VPS35Q96QK1 AC008555.8-201ENST00000623602 2168 ntBASIC1.86□□□□□ -2.11
VPS35Q96QK1 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC1.86□□□□□ -2.11
VPS35Q96QK1 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC1.86□□□□□ -2.11
VPS35Q96QK1 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC1.85□□□□□ -2.11
VPS35Q96QK1 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC1.85□□□□□ -2.11
VPS35Q96QK1 CFHR4-204ENST00000608469 1601 ntTSL 1 (best) BASIC1.85□□□□□ -2.11
VPS35Q96QK1 RNU6-552P-201ENST00000362869 119 ntBASIC1.85□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 129.8 ms