| PGAP3 | Q96FM1 | RNA5SP281-201 | ENST00000516504 | 135 nt | BASIC | 2.37 | □□□□□ -2.03 | | |
| PGAP3 | Q96FM1 | RNU6-506P-201 | ENST00000516553 | 94 nt | BASIC | 2.37 | □□□□□ -2.03 | | |
| PGAP3 | Q96FM1 | SNORD60.2-201 | ENST00000516883 | 86 nt | BASIC | 2.37 | □□□□□ -2.03 | | |
| PGAP3 | Q96FM1 | RNA5SP402-201 | ENST00000517148 | 110 nt | BASIC | 2.37 | □□□□□ -2.03 | | |
| PGAP3 | Q96FM1 | AC108449.1-202 | ENST00000517632 | 478 nt | TSL 3 BASIC | 2.37 | □□□□□ -2.03 | | |
| PGAP3 | Q96FM1 | AC087854.1-201 | ENST00000519706 | 414 nt | BASIC | 2.37 | □□□□□ -2.03 | | |
| PGAP3 | Q96FM1 | AC034114.1-201 | ENST00000520293 | 285 nt | BASIC | 2.37 | □□□□□ -2.03 | | |
| PGAP3 | Q96FM1 | AP000763.2-201 | ENST00000540641 | 163 nt | BASIC | 2.37 | □□□□□ -2.03 | | |
| PGAP3 | Q96FM1 | AP002770.2-201 | ENST00000543613 | 532 nt | BASIC | 2.37 | □□□□□ -2.03 | | |
| PGAP3 | Q96FM1 | AC103996.1-201 | ENST00000555468 | 102 nt | BASIC | 2.37 | □□□□□ -2.03 | | |
| PGAP3 | Q96FM1 | HMGB1P33-201 | ENST00000563485 | 527 nt | BASIC | 2.37 | □□□□□ -2.03 | | |
| PGAP3 | Q96FM1 | MYL12BP1-201 | ENST00000569826 | 507 nt | BASIC | 2.37 | □□□□□ -2.03 | | |
| PGAP3 | Q96FM1 | AL162413.1-201 | ENST00000603198 | 110 nt | BASIC | 2.37 | □□□□□ -2.03 | | |
| PGAP3 | Q96FM1 | ELOCP5-201 | ENST00000604924 | 333 nt | BASIC | 2.37 | □□□□□ -2.03 | | |
| PGAP3 | Q96FM1 | AC026523.1-201 | ENST00000617221 | 490 nt | TSL 5 BASIC | 2.37 | □□□□□ -2.03 | | |
| PGAP3 | Q96FM1 | AC241585.2-209 | ENST00000638217 | 143 nt | BASIC | 2.37 | □□□□□ -2.03 | | |
| PGAP3 | Q96FM1 | CEP57-213 | ENST00000541150 | 2911 nt | APPRIS ALT2 TSL 5 BASIC | 2.37 | □□□□□ -2.03 | | |
| PGAP3 | Q96FM1 | ATP11C-201 | ENST00000327569 | 6115 nt | APPRIS P3 TSL 1 (best) BASIC | 2.37 | □□□□□ -2.03 | | |
| PGAP3 | Q96FM1 | AP000560.1-201 | ENST00000624150 | 1937 nt | BASIC | 2.36 | □□□□□ -2.03 | | |
| PGAP3 | Q96FM1 | OR51A4-202 | ENST00000641898 | 4393 nt | APPRIS P1 BASIC | 2.36 | □□□□□ -2.03 | | |
| PGAP3 | Q96FM1 | RNU6-546P-201 | ENST00000383991 | 107 nt | BASIC | 2.36 | □□□□□ -2.03 | | |
| PGAP3 | Q96FM1 | RNU6-692P-201 | ENST00000384496 | 107 nt | BASIC | 2.36 | □□□□□ -2.03 | | |
| PGAP3 | Q96FM1 | RNU2-32P-201 | ENST00000411193 | 191 nt | BASIC | 2.36 | □□□□□ -2.03 | | |
| PGAP3 | Q96FM1 | EDDM3CP-201 | ENST00000415977 | 425 nt | BASIC | 2.36 | □□□□□ -2.03 | | |
| PGAP3 | Q96FM1 | MAMDC2-AS1-203 | ENST00000420573 | 339 nt | TSL 3 BASIC | 2.36 | □□□□□ -2.03 | | |
| PGAP3 | Q96FM1 | LINC01707-201 | ENST00000425517 | 627 nt | TSL 3 BASIC | 2.36 | □□□□□ -2.03 | | |
| PGAP3 | Q96FM1 | AL512271.1-201 | ENST00000439878 | 434 nt | TSL 3 BASIC | 2.36 | □□□□□ -2.03 | | |
| PGAP3 | Q96FM1 | AC018816.1-203 | ENST00000441894 | 338 nt | TSL 3 BASIC | 2.36 | □□□□□ -2.03 | | |
| PGAP3 | Q96FM1 | AL442638.1-201 | ENST00000443359 | 237 nt | TSL 5 BASIC | 2.36 | □□□□□ -2.03 | | |
| PGAP3 | Q96FM1 | AC005703.2-201 | ENST00000453339 | 343 nt | TSL 2 BASIC | 2.36 | □□□□□ -2.03 | | |
| PGAP3 | Q96FM1 | SNRPGP7-201 | ENST00000469016 | 106 nt | BASIC | 2.36 | □□□□□ -2.03 | | |
| PGAP3 | Q96FM1 | AC087884.1-201 | ENST00000469738 | 328 nt | BASIC | 2.36 | □□□□□ -2.03 | | |
| PGAP3 | Q96FM1 | RPL21P99-201 | ENST00000480369 | 423 nt | BASIC | 2.36 | □□□□□ -2.03 | | |
| PGAP3 | Q96FM1 | SMAD1-AS2-201 | ENST00000508936 | 1090 nt | TSL 1 (best) BASIC | 2.36 | □□□□□ -2.03 | | |
| PGAP3 | Q96FM1 | SNORA4.4-201 | ENST00000515921 | 135 nt | BASIC | 2.36 | □□□□□ -2.03 | | |
| PGAP3 | Q96FM1 | RNU6-1281P-201 | ENST00000516223 | 105 nt | BASIC | 2.36 | □□□□□ -2.03 | | |
| PGAP3 | Q96FM1 | AC087241.2-201 | ENST00000535801 | 324 nt | BASIC | 2.36 | □□□□□ -2.03 | | |
| PGAP3 | Q96FM1 | AC078814.3-201 | ENST00000553036 | 491 nt | BASIC | 2.36 | □□□□□ -2.03 | | |
| PGAP3 | Q96FM1 | AL133279.1-202 | ENST00000556789 | 456 nt | TSL 5 BASIC | 2.36 | □□□□□ -2.03 | | |
| PGAP3 | Q96FM1 | AC044840.1-201 | ENST00000577641 | 472 nt | TSL 3 BASIC | 2.36 | □□□□□ -2.03 | | |
| PGAP3 | Q96FM1 | AC026271.5-201 | ENST00000577873 | 130 nt | BASIC | 2.36 | □□□□□ -2.03 | | |
| PGAP3 | Q96FM1 | MIR3136-201 | ENST00000583498 | 78 nt | BASIC | 2.36 | □□□□□ -2.03 | | |
| PGAP3 | Q96FM1 | AC022335.1-204 | ENST00000590779 | 600 nt | APPRIS ALT2 TSL 2 BASIC | 2.36 | □□□□□ -2.03 | | |
| PGAP3 | Q96FM1 | DCAF17-212 | ENST00000611110 | 975 nt | TSL 1 (best) BASIC | 2.36 | □□□□□ -2.03 | | |
| PGAP3 | Q96FM1 | AGL-204 | ENST00000370161 | 6923 nt | TSL 5 BASIC | 2.35 | □□□□□ -2.03 | | |
| PGAP3 | Q96FM1 | RNU4-56P-201 | ENST00000364700 | 142 nt | BASIC | 2.35 | □□□□□ -2.03 | | |
| PGAP3 | Q96FM1 | RNU1-51P-201 | ENST00000365345 | 176 nt | BASIC | 2.35 | □□□□□ -2.03 | | |
| PGAP3 | Q96FM1 | RNU6-43P-201 | ENST00000384302 | 107 nt | BASIC | 2.35 | □□□□□ -2.03 | | |
| PGAP3 | Q96FM1 | HMGB3P2-201 | ENST00000411913 | 584 nt | BASIC | 2.35 | □□□□□ -2.03 | | |
| PGAP3 | Q96FM1 | AL356277.2-201 | ENST00000421318 | 441 nt | TSL 2 BASIC | 2.35 | □□□□□ -2.03 | | |
| PGAP3 | Q96FM1 | MTCO2P3-201 | ENST00000442543 | 421 nt | BASIC | 2.35 | □□□□□ -2.03 | | |
| PGAP3 | Q96FM1 | MTND3P16-201 | ENST00000452205 | 344 nt | BASIC | 2.35 | □□□□□ -2.03 | | |
| PGAP3 | Q96FM1 | AC018868.1-201 | ENST00000491307 | 315 nt | BASIC | 2.35 | □□□□□ -2.03 | | |
| PGAP3 | Q96FM1 | AC097467.1-201 | ENST00000513660 | 370 nt | TSL 5 BASIC | 2.35 | □□□□□ -2.03 | | |
| PGAP3 | Q96FM1 | RNU5F-2P-201 | ENST00000516066 | 82 nt | BASIC | 2.35 | □□□□□ -2.03 | | |
| PGAP3 | Q96FM1 | RNU6-1038P-201 | ENST00000516516 | 104 nt | BASIC | 2.35 | □□□□□ -2.03 | | |
| PGAP3 | Q96FM1 | RNA5SP137-201 | ENST00000516833 | 135 nt | BASIC | 2.35 | □□□□□ -2.03 | | |
| PGAP3 | Q96FM1 | AC018630.3-201 | ENST00000542637 | 96 nt | BASIC | 2.35 | □□□□□ -2.03 | | |
| PGAP3 | Q96FM1 | AC011611.2-201 | ENST00000549888 | 358 nt | TSL 3 BASIC | 2.35 | □□□□□ -2.03 | | |
| PGAP3 | Q96FM1 | SNRPGP18-201 | ENST00000553000 | 214 nt | BASIC | 2.35 | □□□□□ -2.03 | | |
| PGAP3 | Q96FM1 | AC007610.2-201 | ENST00000566770 | 666 nt | TSL 3 BASIC | 2.35 | □□□□□ -2.03 | | |
| PGAP3 | Q96FM1 | AC009314.1-201 | ENST00000603871 | 304 nt | BASIC | 2.35 | □□□□□ -2.03 | | |
| PGAP3 | Q96FM1 | AC004492.1-201 | ENST00000607036 | 742 nt | BASIC | 2.35 | □□□□□ -2.03 | | |
| PGAP3 | Q96FM1 | AC009831.4-201 | ENST00000620744 | 325 nt | BASIC | 2.35 | □□□□□ -2.03 | | |
| PGAP3 | Q96FM1 | DLX6-AS1_1.1-201 | ENST00000621599 | 180 nt | BASIC | 2.35 | □□□□□ -2.03 | | |
| PGAP3 | Q96FM1 | DNAH7-201 | ENST00000312428 | 12394 nt | APPRIS P1 TSL 1 (best) BASIC | 2.35 | □□□□□ -2.03 | | |
| PGAP3 | Q96FM1 | ZBED5-202 | ENST00000432999 | 2741 nt | APPRIS P1 TSL 1 (best) BASIC | 2.35 | □□□□□ -2.03 | | |
| PGAP3 | Q96FM1 | OR8K3-204 | ENST00000641689 | 2380 nt | APPRIS P1 BASIC | 2.34 | □□□□□ -2.03 | | |
| PGAP3 | Q96FM1 | RNU4-20P-201 | ENST00000365601 | 151 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| PGAP3 | Q96FM1 | SNORD23.1-201 | ENST00000408212 | 104 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| PGAP3 | Q96FM1 | AC078809.1-201 | ENST00000427601 | 140 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| PGAP3 | Q96FM1 | LINC01807-201 | ENST00000432481 | 676 nt | TSL 3 BASIC | 2.34 | □□□□□ -2.03 | | |
| PGAP3 | Q96FM1 | SNAP23P1-201 | ENST00000433229 | 246 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| PGAP3 | Q96FM1 | RNU6-1208P-201 | ENST00000459588 | 107 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| PGAP3 | Q96FM1 | AC117394.2-201 | ENST00000487827 | 323 nt | TSL 3 BASIC | 2.34 | □□□□□ -2.03 | | |
| PGAP3 | Q96FM1 | RPL38P4-201 | ENST00000502376 | 214 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| PGAP3 | Q96FM1 | AC008413.1-201 | ENST00000511864 | 177 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| PGAP3 | Q96FM1 | LNX1-AS1-203 | ENST00000511989 | 488 nt | TSL 2 BASIC | 2.34 | □□□□□ -2.03 | | |
| PGAP3 | Q96FM1 | RNU6-314P-201 | ENST00000516574 | 104 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| PGAP3 | Q96FM1 | RNU7-193P-201 | ENST00000516723 | 65 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| PGAP3 | Q96FM1 | RNU6-667P-201 | ENST00000517186 | 102 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| PGAP3 | Q96FM1 | AC090568.2-205 | ENST00000518631 | 576 nt | TSL 4 BASIC | 2.34 | □□□□□ -2.03 | | |
| PGAP3 | Q96FM1 | AC099554.1-201 | ENST00000520032 | 572 nt | TSL 3 BASIC | 2.34 | □□□□□ -2.03 | | |
| PGAP3 | Q96FM1 | AC022616.8-201 | ENST00000533569 | 253 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| PGAP3 | Q96FM1 | NDUFA5P6-201 | ENST00000542110 | 379 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| PGAP3 | Q96FM1 | AC091544.4-201 | ENST00000555268 | 342 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| PGAP3 | Q96FM1 | AC025043.1-201 | ENST00000558047 | 625 nt | TSL 2 BASIC | 2.34 | □□□□□ -2.03 | | |
| PGAP3 | Q96FM1 | MIR3945-201 | ENST00000581853 | 98 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| PGAP3 | Q96FM1 | SNRPGP17-201 | ENST00000603780 | 214 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| PGAP3 | Q96FM1 | AC018889.1-201 | ENST00000605372 | 397 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| PGAP3 | Q96FM1 | AL590808.1-201 | ENST00000618696 | 141 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| PGAP3 | Q96FM1 | YWHAEP7-203 | ENST00000622054 | 312 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| PGAP3 | Q96FM1 | AC068137.3-201 | ENST00000639191 | 341 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| PGAP3 | Q96FM1 | AC130466.1-201 | ENST00000636354 | 4683 nt | TSL 5 BASIC | 2.34 | □□□□□ -2.04 | | |
| PGAP3 | Q96FM1 | MTND5P6-201 | ENST00000422338 | 1798 nt | BASIC | 2.33 | □□□□□ -2.04 | | |
| PGAP3 | Q96FM1 | RGS18-201 | ENST00000367460 | 2150 nt | APPRIS P1 TSL 1 (best) BASIC | 2.33 | □□□□□ -2.04 | | |
| PGAP3 | Q96FM1 | PRKD3-201 | ENST00000234179 | 5900 nt | APPRIS P1 TSL 1 (best) BASIC | 2.33 | □□□□□ -2.04 | | |
| PGAP3 | Q96FM1 | Y_RNA.318-201 | ENST00000365131 | 97 nt | BASIC | 2.33 | □□□□□ -2.04 | | |
| PGAP3 | Q96FM1 | Y_RNA.378-201 | ENST00000365652 | 113 nt | BASIC | 2.33 | □□□□□ -2.04 | | |
| PGAP3 | Q96FM1 | SNORA80E-201 | ENST00000384744 | 137 nt | BASIC | 2.33 | □□□□□ -2.04 | | |