Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 MIR4298-201ENST00000584380 73 ntBASIC3.52□□□□□ -1.85
USP39Q53GS9 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC3.52□□□□□ -1.85
USP39Q53GS9 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC3.52□□□□□ -1.85
USP39Q53GS9 AP000787.2-201ENST00000604432 568 ntBASIC3.52□□□□□ -1.85
USP39Q53GS9 CENPF-206ENST00000614578 528 ntTSL 5 BASIC3.52□□□□□ -1.85
USP39Q53GS9 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC3.52□□□□□ -1.85
USP39Q53GS9 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.52□□□□□ -1.85
USP39Q53GS9 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
USP39Q53GS9 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
USP39Q53GS9 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC3.51□□□□□ -1.85
USP39Q53GS9 Y_RNA.143-201ENST00000363520 106 ntBASIC3.51□□□□□ -1.85
USP39Q53GS9 RNA5SP42-201ENST00000364278 115 ntBASIC3.51□□□□□ -1.85
USP39Q53GS9 Y_RNA.358-201ENST00000365491 99 ntBASIC3.51□□□□□ -1.85
USP39Q53GS9 Y_RNA.506-201ENST00000384494 102 ntBASIC3.51□□□□□ -1.85
USP39Q53GS9 MIR301A-201ENST00000385261 86 ntBASIC3.51□□□□□ -1.85
USP39Q53GS9 SNORA12.2-201ENST00000391040 156 ntBASIC3.51□□□□□ -1.85
USP39Q53GS9 MIR190B-201ENST00000401119 79 ntBASIC3.51□□□□□ -1.85
USP39Q53GS9 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC3.51□□□□□ -1.85
USP39Q53GS9 ATP6V0E1P4-201ENST00000427294 242 ntBASIC3.51□□□□□ -1.85
USP39Q53GS9 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC3.51□□□□□ -1.85
USP39Q53GS9 U8.22-201ENST00000459141 133 ntBASIC3.51□□□□□ -1.85
USP39Q53GS9 RNU7-120P-201ENST00000459334 63 ntBASIC3.51□□□□□ -1.85
USP39Q53GS9 U8.21-201ENST00000459536 136 ntBASIC3.51□□□□□ -1.85
USP39Q53GS9 RPL23AP45-201ENST00000476406 468 ntBASIC3.51□□□□□ -1.85
USP39Q53GS9 HSPE1P6-201ENST00000479457 291 ntBASIC3.51□□□□□ -1.85
USP39Q53GS9 AC107393.1-201ENST00000512403 346 ntBASIC3.51□□□□□ -1.85
USP39Q53GS9 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC3.51□□□□□ -1.85
USP39Q53GS9 AC010186.2-204ENST00000537668 439 ntBASIC3.51□□□□□ -1.85
USP39Q53GS9 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC3.51□□□□□ -1.85
USP39Q53GS9 AC093023.1-201ENST00000547375 507 ntBASIC3.51□□□□□ -1.85
USP39Q53GS9 AC103996.1-201ENST00000555468 102 ntBASIC3.51□□□□□ -1.85
USP39Q53GS9 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC3.51□□□□□ -1.85
USP39Q53GS9 MIR5680-201ENST00000577577 84 ntBASIC3.51□□□□□ -1.85
USP39Q53GS9 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC3.51□□□□□ -1.85
USP39Q53GS9 MIR4513-201ENST00000581077 86 ntBASIC3.51□□□□□ -1.85
USP39Q53GS9 AL161798.1-201ENST00000604630 131 ntBASIC3.51□□□□□ -1.85
USP39Q53GS9 AC004852.3-201ENST00000614131 326 ntBASIC3.51□□□□□ -1.85
USP39Q53GS9 AL110115.1-201ENST00000614396 364 ntBASIC3.51□□□□□ -1.85
USP39Q53GS9 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
USP39Q53GS9 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
USP39Q53GS9 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC3.5□□□□□ -1.85
USP39Q53GS9 AL365361.1-201ENST00000566942 3481 ntBASIC3.5□□□□□ -1.85
USP39Q53GS9 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.5□□□□□ -1.85
USP39Q53GS9 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.5□□□□□ -1.85
USP39Q53GS9 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
USP39Q53GS9 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC3.5□□□□□ -1.85
USP39Q53GS9 Y_RNA.83-201ENST00000363005 113 ntBASIC3.5□□□□□ -1.85
USP39Q53GS9 RNU6-1167P-201ENST00000363227 94 ntBASIC3.5□□□□□ -1.85
USP39Q53GS9 SNORD14B-201ENST00000364533 90 ntBASIC3.5□□□□□ -1.85
USP39Q53GS9 U3.13-201ENST00000364804 214 ntBASIC3.5□□□□□ -1.85
USP39Q53GS9 CRP-203ENST00000368111 512 ntTSL 3 BASIC3.5□□□□□ -1.85
USP39Q53GS9 RNY3P4-201ENST00000384428 101 ntBASIC3.5□□□□□ -1.85
USP39Q53GS9 RNU6-1140P-201ENST00000410517 106 ntBASIC3.5□□□□□ -1.85
USP39Q53GS9 RNU6-1025P-201ENST00000410629 104 ntBASIC3.5□□□□□ -1.85
USP39Q53GS9 Y_RNA.793-201ENST00000411222 111 ntBASIC3.5□□□□□ -1.85
USP39Q53GS9 TMEM167AP1-201ENST00000423409 219 ntBASIC3.5□□□□□ -1.85
USP39Q53GS9 AL606753.1-201ENST00000427435 87 ntBASIC3.5□□□□□ -1.85
USP39Q53GS9 AC013470.1-201ENST00000453438 462 ntBASIC3.5□□□□□ -1.85
USP39Q53GS9 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC3.5□□□□□ -1.85
USP39Q53GS9 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC3.5□□□□□ -1.85
USP39Q53GS9 FCF1P8-201ENST00000510322 597 ntBASIC3.5□□□□□ -1.85
USP39Q53GS9 IGKV2-26-201ENST00000518305 343 ntBASIC3.5□□□□□ -1.85
USP39Q53GS9 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC3.5□□□□□ -1.85
USP39Q53GS9 MIR4325-201ENST00000583049 90 ntBASIC3.5□□□□□ -1.85
USP39Q53GS9 AC107294.1-201ENST00000609524 467 ntBASIC3.5□□□□□ -1.85
USP39Q53GS9 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC3.5□□□□□ -1.85
USP39Q53GS9 AC093010.3-201ENST00000570269 15214 ntBASIC3.5□□□□□ -1.85
USP39Q53GS9 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC3.5□□□□□ -1.85
USP39Q53GS9 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC3.5□□□□□ -1.85
USP39Q53GS9 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC3.5□□□□□ -1.85
USP39Q53GS9 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC3.5□□□□□ -1.85
USP39Q53GS9 Z83843.1-201ENST00000604070 3685 ntBASIC3.5□□□□□ -1.85
USP39Q53GS9 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
USP39Q53GS9 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC3.5□□□□□ -1.85
USP39Q53GS9 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC3.5□□□□□ -1.85
USP39Q53GS9 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC3.49□□□□□ -1.85
USP39Q53GS9 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
USP39Q53GS9 AL353743.1-202ENST00000431724 1695 ntBASIC3.49□□□□□ -1.85
USP39Q53GS9 IQCG-205ENST00000455191 1981 ntAPPRIS P1 TSL 2 BASIC3.49□□□□□ -1.85
USP39Q53GS9 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC3.49□□□□□ -1.85
USP39Q53GS9 MAPK10-362ENST00000641864 4484 ntBASIC3.49□□□□□ -1.85
USP39Q53GS9 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC3.49□□□□□ -1.85
USP39Q53GS9 MIR411-201ENST00000362239 96 ntBASIC3.49□□□□□ -1.85
USP39Q53GS9 Y_RNA.76-201ENST00000362931 109 ntBASIC3.49□□□□□ -1.85
USP39Q53GS9 RNU6-682P-201ENST00000363843 106 ntBASIC3.49□□□□□ -1.85
USP39Q53GS9 Y_RNA.291-201ENST00000364886 113 ntBASIC3.49□□□□□ -1.85
USP39Q53GS9 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC3.49□□□□□ -1.85
USP39Q53GS9 Y_RNA.405-201ENST00000383979 100 ntBASIC3.49□□□□□ -1.85
USP39Q53GS9 Y_RNA.451-201ENST00000384200 100 ntBASIC3.49□□□□□ -1.85
USP39Q53GS9 Y_RNA.524-201ENST00000384564 100 ntBASIC3.49□□□□□ -1.85
USP39Q53GS9 Y_RNA.561-201ENST00000384694 100 ntBASIC3.49□□□□□ -1.85
USP39Q53GS9 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC3.49□□□□□ -1.85
USP39Q53GS9 UBA52P6-201ENST00000399822 382 ntBASIC3.49□□□□□ -1.85
USP39Q53GS9 MTCYBP2-201ENST00000407745 171 ntBASIC3.49□□□□□ -1.85
USP39Q53GS9 MORN2-203ENST00000409131 544 ntTSL 5 BASIC3.49□□□□□ -1.85
USP39Q53GS9 RN7SKP111-201ENST00000410349 271 ntBASIC3.49□□□□□ -1.85
USP39Q53GS9 RNU2-20P-201ENST00000410425 191 ntBASIC3.49□□□□□ -1.85
USP39Q53GS9 RN7SKP210-201ENST00000459176 261 ntBASIC3.49□□□□□ -1.85
USP39Q53GS9 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC3.49□□□□□ -1.85
USP39Q53GS9 UBE2Q2P9-201ENST00000490086 202 ntBASIC3.49□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 131 ms