Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 MIR22-201ENST00000362190 85 ntBASIC2.36□□□□□ -2.03
PDLIM3Q53GG5 SNORA67.1-201ENST00000364749 141 ntBASIC2.36□□□□□ -2.03
PDLIM3Q53GG5 Y_RNA.303-201ENST00000364998 94 ntBASIC2.36□□□□□ -2.03
PDLIM3Q53GG5 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC2.36□□□□□ -2.03
PDLIM3Q53GG5 RNU6-748P-201ENST00000384648 107 ntBASIC2.36□□□□□ -2.03
PDLIM3Q53GG5 MIR544A-201ENST00000384855 91 ntBASIC2.36□□□□□ -2.03
PDLIM3Q53GG5 RNU6-1106P-201ENST00000390845 107 ntBASIC2.36□□□□□ -2.03
PDLIM3Q53GG5 RNU6-1328P-201ENST00000410938 106 ntBASIC2.36□□□□□ -2.03
PDLIM3Q53GG5 Z82205.1-201ENST00000428456 297 ntBASIC2.36□□□□□ -2.03
PDLIM3Q53GG5 AL591806.2-201ENST00000433122 173 ntBASIC2.36□□□□□ -2.03
PDLIM3Q53GG5 IFNA20P-201ENST00000436840 528 ntBASIC2.36□□□□□ -2.03
PDLIM3Q53GG5 AL513328.1-201ENST00000446460 224 ntBASIC2.36□□□□□ -2.03
PDLIM3Q53GG5 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC2.36□□□□□ -2.03
PDLIM3Q53GG5 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC2.36□□□□□ -2.03
PDLIM3Q53GG5 PMCHL2-203ENST00000457791 237 ntBASIC2.36□□□□□ -2.03
PDLIM3Q53GG5 AC117440.1-201ENST00000474107 571 ntBASIC2.36□□□□□ -2.03
PDLIM3Q53GG5 RPS29P26-201ENST00000477483 171 ntBASIC2.36□□□□□ -2.03
PDLIM3Q53GG5 AC018437.1-201ENST00000492214 406 ntBASIC2.36□□□□□ -2.03
PDLIM3Q53GG5 MTCYBP40-201ENST00000509390 1135 ntBASIC2.36□□□□□ -2.03
PDLIM3Q53GG5 RNA5SP458-201ENST00000516188 119 ntBASIC2.36□□□□□ -2.03
PDLIM3Q53GG5 RNU6-1088P-201ENST00000516850 104 ntBASIC2.36□□□□□ -2.03
PDLIM3Q53GG5 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC2.36□□□□□ -2.03
PDLIM3Q53GG5 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC2.36□□□□□ -2.03
PDLIM3Q53GG5 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC2.36□□□□□ -2.03
PDLIM3Q53GG5 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC2.36□□□□□ -2.03
PDLIM3Q53GG5 AC107016.2-201ENST00000547968 190 ntBASIC2.36□□□□□ -2.03
PDLIM3Q53GG5 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC2.36□□□□□ -2.03
PDLIM3Q53GG5 MTCO3P13-201ENST00000577757 781 ntBASIC2.36□□□□□ -2.03
PDLIM3Q53GG5 MIR548S-201ENST00000581352 82 ntBASIC2.36□□□□□ -2.03
PDLIM3Q53GG5 MIR3199-1-201ENST00000582434 88 ntBASIC2.36□□□□□ -2.03
PDLIM3Q53GG5 AL133216.2-202ENST00000634512 349 ntBASIC2.36□□□□□ -2.03
PDLIM3Q53GG5 MIR6733-201ENST00000635723 61 ntBASIC2.36□□□□□ -2.03
PDLIM3Q53GG5 MIR7157-201ENST00000635801 60 ntBASIC2.36□□□□□ -2.03
PDLIM3Q53GG5 MIR3529-201ENST00000637713 78 ntBASIC2.36□□□□□ -2.03
PDLIM3Q53GG5 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC2.36□□□□□ -2.03
PDLIM3Q53GG5 AC096644.4-201ENST00000563417 2912 ntBASIC2.35□□□□□ -2.03
PDLIM3Q53GG5 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
PDLIM3Q53GG5 Z82209.1-201ENST00000422141 2135 ntBASIC2.35□□□□□ -2.03
PDLIM3Q53GG5 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC2.35□□□□□ -2.03
PDLIM3Q53GG5 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC2.35□□□□□ -2.03
PDLIM3Q53GG5 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC2.35□□□□□ -2.03
PDLIM3Q53GG5 RNU6-212P-201ENST00000362642 104 ntBASIC2.35□□□□□ -2.03
PDLIM3Q53GG5 RNU6-1329P-201ENST00000365664 107 ntBASIC2.35□□□□□ -2.03
PDLIM3Q53GG5 RNU6-1245P-201ENST00000411130 106 ntBASIC2.35□□□□□ -2.03
PDLIM3Q53GG5 AC138393.2-201ENST00000414742 246 ntBASIC2.35□□□□□ -2.03
PDLIM3Q53GG5 RPL21P111-201ENST00000418453 477 ntBASIC2.35□□□□□ -2.03
PDLIM3Q53GG5 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC2.35□□□□□ -2.03
PDLIM3Q53GG5 AL353572.1-201ENST00000442490 417 ntBASIC2.35□□□□□ -2.03
PDLIM3Q53GG5 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC2.35□□□□□ -2.03
PDLIM3Q53GG5 AC023141.11-201ENST00000508864 202 ntBASIC2.35□□□□□ -2.03
PDLIM3Q53GG5 SMURF2P1-201ENST00000514992 481 ntBASIC2.35□□□□□ -2.03
PDLIM3Q53GG5 Y_RNA.682-201ENST00000516457 100 ntBASIC2.35□□□□□ -2.03
PDLIM3Q53GG5 SNORA31.23-201ENST00000517219 133 ntBASIC2.35□□□□□ -2.03
PDLIM3Q53GG5 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC2.35□□□□□ -2.03
PDLIM3Q53GG5 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC2.35□□□□□ -2.03
PDLIM3Q53GG5 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC2.35□□□□□ -2.03
PDLIM3Q53GG5 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC2.35□□□□□ -2.03
PDLIM3Q53GG5 AC005668.1-201ENST00000571142 476 ntBASIC2.35□□□□□ -2.03
PDLIM3Q53GG5 SNORD53-201ENST00000579969 78 ntBASIC2.35□□□□□ -2.03
PDLIM3Q53GG5 MIR4742-201ENST00000581069 85 ntBASIC2.35□□□□□ -2.03
PDLIM3Q53GG5 AC009314.1-201ENST00000603871 304 ntBASIC2.35□□□□□ -2.03
PDLIM3Q53GG5 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
PDLIM3Q53GG5 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC2.35□□□□□ -2.03
PDLIM3Q53GG5 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC2.35□□□□□ -2.03
PDLIM3Q53GG5 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
PDLIM3Q53GG5 AC244517.12-201ENST00000623581 663 ntBASIC2.35□□□□□ -2.03
PDLIM3Q53GG5 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC2.35□□□□□ -2.03
PDLIM3Q53GG5 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC2.35□□□□□ -2.03
PDLIM3Q53GG5 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC2.34□□□□□ -2.03
PDLIM3Q53GG5 Z75746.1-201ENST00000440243 2080 ntBASIC2.34□□□□□ -2.03
PDLIM3Q53GG5 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC2.34□□□□□ -2.03
PDLIM3Q53GG5 RNU6-562P-201ENST00000362731 107 ntBASIC2.34□□□□□ -2.03
PDLIM3Q53GG5 SNORA72.1-201ENST00000363485 129 ntBASIC2.34□□□□□ -2.03
PDLIM3Q53GG5 RNU6-105P-201ENST00000363909 104 ntBASIC2.34□□□□□ -2.03
PDLIM3Q53GG5 Y_RNA.212-201ENST00000364177 102 ntBASIC2.34□□□□□ -2.03
PDLIM3Q53GG5 U3.12-201ENST00000364498 214 ntBASIC2.34□□□□□ -2.03
PDLIM3Q53GG5 RNU6-1317P-201ENST00000364582 104 ntBASIC2.34□□□□□ -2.03
PDLIM3Q53GG5 Y_RNA.269-201ENST00000364685 89 ntBASIC2.34□□□□□ -2.03
PDLIM3Q53GG5 SNORA9.2-201ENST00000365361 133 ntBASIC2.34□□□□□ -2.03
PDLIM3Q53GG5 XGY1-201ENST00000381172 446 ntBASIC2.34□□□□□ -2.03
PDLIM3Q53GG5 RNU1-138P-201ENST00000384093 164 ntBASIC2.34□□□□□ -2.03
PDLIM3Q53GG5 RNU6-767P-201ENST00000384132 107 ntBASIC2.34□□□□□ -2.03
PDLIM3Q53GG5 RNU6-843P-201ENST00000384454 104 ntBASIC2.34□□□□□ -2.03
PDLIM3Q53GG5 RNU6-692P-201ENST00000384496 107 ntBASIC2.34□□□□□ -2.03
PDLIM3Q53GG5 RNU6-306P-201ENST00000384617 107 ntBASIC2.34□□□□□ -2.03
PDLIM3Q53GG5 RNU6-510P-201ENST00000391239 108 ntBASIC2.34□□□□□ -2.03
PDLIM3Q53GG5 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC2.34□□□□□ -2.03
PDLIM3Q53GG5 AL117339.3-201ENST00000418733 162 ntBASIC2.34□□□□□ -2.03
PDLIM3Q53GG5 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC2.34□□□□□ -2.03
PDLIM3Q53GG5 MTND4LP11-201ENST00000422184 280 ntBASIC2.34□□□□□ -2.03
PDLIM3Q53GG5 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC2.34□□□□□ -2.03
PDLIM3Q53GG5 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC2.34□□□□□ -2.03
PDLIM3Q53GG5 AC140059.1-201ENST00000489238 361 ntBASIC2.34□□□□□ -2.03
PDLIM3Q53GG5 AC083906.5-201ENST00000503722 328 ntBASIC2.34□□□□□ -2.03
PDLIM3Q53GG5 SNORA9.3-201ENST00000516383 129 ntBASIC2.34□□□□□ -2.03
PDLIM3Q53GG5 RNU7-30P-201ENST00000516835 62 ntBASIC2.34□□□□□ -2.03
PDLIM3Q53GG5 CR383656.8-201ENST00000549046 145 ntBASIC2.34□□□□□ -2.03
PDLIM3Q53GG5 AC079600.2-201ENST00000550076 130 ntBASIC2.34□□□□□ -2.03
PDLIM3Q53GG5 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC2.34□□□□□ -2.03
PDLIM3Q53GG5 RPS15AP11-201ENST00000594193 385 ntBASIC2.34□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 189.5 ms