Protein–RNA interactions for Protein: Q02539

HIST1H1A, Histone H1.1, humanhuman

Predicted RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIST1H1AQ02539 AL137100.2-201ENST00000555786 315 ntBASIC0.28□□□□□ -2.36
HIST1H1AQ02539 AC025678.1-201ENST00000567861 338 ntBASIC0.28□□□□□ -2.36
HIST1H1AQ02539 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC0.28□□□□□ -2.36
HIST1H1AQ02539 BNIP3P8-201ENST00000597863 560 ntBASIC0.28□□□□□ -2.36
HIST1H1AQ02539 AL159153.1-201ENST00000619688 317 ntBASIC0.28□□□□□ -2.36
HIST1H1AQ02539 AC243829.3-201ENST00000622177 108 ntBASIC0.28□□□□□ -2.36
HIST1H1AQ02539 AP000676.3-201ENST00000623299 569 ntBASIC0.28□□□□□ -2.36
HIST1H1AQ02539 UGP2-230ENST00000626380 276 ntTSL 5 BASIC0.28□□□□□ -2.36
HIST1H1AQ02539 MIR340-201ENST00000362125 95 ntBASIC0.27□□□□□ -2.37
HIST1H1AQ02539 RNU6-1284P-201ENST00000363701 100 ntBASIC0.27□□□□□ -2.37
HIST1H1AQ02539 RNU6-945P-201ENST00000383947 107 ntBASIC0.27□□□□□ -2.37
HIST1H1AQ02539 RNA5SP247-201ENST00000411181 105 ntBASIC0.27□□□□□ -2.37
HIST1H1AQ02539 RNU6-1054P-201ENST00000411293 104 ntBASIC0.27□□□□□ -2.37
HIST1H1AQ02539 LINC01673-201ENST00000426418 468 ntTSL 3 BASIC0.27□□□□□ -2.37
HIST1H1AQ02539 AL591704.1-201ENST00000432574 275 ntBASIC0.27□□□□□ -2.37
HIST1H1AQ02539 AL591212.2-201ENST00000433923 257 ntBASIC0.27□□□□□ -2.37
HIST1H1AQ02539 MTCO3P43-201ENST00000440974 771 ntBASIC0.27□□□□□ -2.37
HIST1H1AQ02539 GAPDHP17-201ENST00000449858 1001 ntBASIC0.27□□□□□ -2.37
HIST1H1AQ02539 MTCYBP1-201ENST00000454315 1119 ntBASIC0.27□□□□□ -2.37
HIST1H1AQ02539 TPRKBP1-201ENST00000456243 481 ntBASIC0.27□□□□□ -2.37
HIST1H1AQ02539 RNU7-59P-201ENST00000459101 61 ntBASIC0.27□□□□□ -2.37
HIST1H1AQ02539 AC103957.1-202ENST00000519814 735 ntTSL 3 BASIC0.27□□□□□ -2.37
HIST1H1AQ02539 AL078603.1-201ENST00000603824 313 ntBASIC0.27□□□□□ -2.37
HIST1H1AQ02539 MIR3976-201ENST00000606807 139 ntBASIC0.27□□□□□ -2.37
HIST1H1AQ02539 AC134026.1-201ENST00000623249 2239 ntBASIC0.27□□□□□ -2.37
HIST1H1AQ02539 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC0.27□□□□□ -2.37
HIST1H1AQ02539 ELL2P3-201ENST00000457883 1602 ntBASIC0.27□□□□□ -2.37
HIST1H1AQ02539 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC0.27□□□□□ -2.37
HIST1H1AQ02539 U6.112-201ENST00000384129 70 ntBASIC0.26□□□□□ -2.37
HIST1H1AQ02539 MIR499A-201ENST00000384903 122 ntBASIC0.26□□□□□ -2.37
HIST1H1AQ02539 AL031577.2-201ENST00000404133 280 ntBASIC0.26□□□□□ -2.37
HIST1H1AQ02539 MTND5P14-201ENST00000441481 1267 ntBASIC0.26□□□□□ -2.37
HIST1H1AQ02539 MTND1P31-201ENST00000449206 961 ntBASIC0.26□□□□□ -2.37
HIST1H1AQ02539 MTND2P33-201ENST00000506452 1031 ntBASIC0.26□□□□□ -2.37
HIST1H1AQ02539 AC067942.3-201ENST00000512025 362 ntBASIC0.26□□□□□ -2.37
HIST1H1AQ02539 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC0.26□□□□□ -2.37
HIST1H1AQ02539 RNU4-57P-201ENST00000515980 135 ntBASIC0.26□□□□□ -2.37
HIST1H1AQ02539 RNU6-1315P-201ENST00000517187 99 ntBASIC0.26□□□□□ -2.37
HIST1H1AQ02539 AL442163.3-201ENST00000554110 156 ntBASIC0.26□□□□□ -2.37
HIST1H1AQ02539 AC092325.1-201ENST00000566449 554 ntBASIC0.26□□□□□ -2.37
HIST1H1AQ02539 MIR4709-201ENST00000577272 72 ntBASIC0.26□□□□□ -2.37
HIST1H1AQ02539 AL358072.1-201ENST00000604156 575 ntBASIC0.26□□□□□ -2.37
HIST1H1AQ02539 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC0.26□□□□□ -2.37
HIST1H1AQ02539 AL442644.1-201ENST00000454390 3105 ntBASIC0.26□□□□□ -2.37
HIST1H1AQ02539 SNORD3E-201ENST00000362899 217 ntBASIC0.25□□□□□ -2.37
HIST1H1AQ02539 RPL21P1-201ENST00000399532 476 ntBASIC0.25□□□□□ -2.37
HIST1H1AQ02539 RNU6-1025P-201ENST00000410629 104 ntBASIC0.25□□□□□ -2.37
HIST1H1AQ02539 MTCO1P21-201ENST00000416634 589 ntBASIC0.25□□□□□ -2.37
HIST1H1AQ02539 ARL5AP1-201ENST00000418991 388 ntBASIC0.25□□□□□ -2.37
HIST1H1AQ02539 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC0.25□□□□□ -2.37
HIST1H1AQ02539 AC006369.2-201ENST00000431712 384 ntTSL 3 BASIC0.25□□□□□ -2.37
HIST1H1AQ02539 MTND4LP7-201ENST00000431728 294 ntBASIC0.25□□□□□ -2.37
HIST1H1AQ02539 MTCO3P18-201ENST00000440206 761 ntBASIC0.25□□□□□ -2.37
HIST1H1AQ02539 MTND4P25-201ENST00000441039 533 ntBASIC0.25□□□□□ -2.37
HIST1H1AQ02539 ATP5J2P3-201ENST00000451550 258 ntBASIC0.25□□□□□ -2.37
HIST1H1AQ02539 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC0.25□□□□□ -2.37
HIST1H1AQ02539 BIRC6-AS1-201ENST00000455572 697 ntTSL 3 BASIC0.25□□□□□ -2.37
HIST1H1AQ02539 RNU6-953P-201ENST00000459154 107 ntBASIC0.25□□□□□ -2.37
HIST1H1AQ02539 MTND1P3-201ENST00000484956 952 ntBASIC0.25□□□□□ -2.37
HIST1H1AQ02539 MTCO3P7-201ENST00000510008 774 ntBASIC0.25□□□□□ -2.37
HIST1H1AQ02539 RNU6-1223P-201ENST00000517124 104 ntBASIC0.25□□□□□ -2.37
HIST1H1AQ02539 AL512605.2-201ENST00000592972 256 ntBASIC0.25□□□□□ -2.37
HIST1H1AQ02539 AC008764.5-201ENST00000597851 190 ntTSL 5 BASIC0.25□□□□□ -2.37
HIST1H1AQ02539 AL138955.1-201ENST00000622881 1040 ntBASIC0.25□□□□□ -2.37
HIST1H1AQ02539 MIR6516-201ENST00000630554 81 ntBASIC0.25□□□□□ -2.37
HIST1H1AQ02539 U3.8-201ENST00000363675 217 ntBASIC0.24□□□□□ -2.37
HIST1H1AQ02539 SNORD32B-201ENST00000364460 84 ntBASIC0.24□□□□□ -2.37
HIST1H1AQ02539 RNU6-744P-201ENST00000365557 107 ntBASIC0.24□□□□□ -2.37
HIST1H1AQ02539 RNU6-1316P-201ENST00000384242 108 ntBASIC0.24□□□□□ -2.37
HIST1H1AQ02539 AP000432.1-201ENST00000416641 516 ntTSL 3 BASIC0.24□□□□□ -2.37
HIST1H1AQ02539 ELOCP9-201ENST00000418624 239 ntBASIC0.24□□□□□ -2.37
HIST1H1AQ02539 ZNF385D-AS2-201ENST00000436306 424 ntTSL 5 BASIC0.24□□□□□ -2.37
HIST1H1AQ02539 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC0.24□□□□□ -2.37
HIST1H1AQ02539 AL357793.2-201ENST00000447056 850 ntTSL 3 BASIC0.24□□□□□ -2.37
HIST1H1AQ02539 AL157871.3-201ENST00000557231 293 ntBASIC0.24□□□□□ -2.37
HIST1H1AQ02539 AC060771.1-201ENST00000582031 164 ntBASIC0.24□□□□□ -2.37
HIST1H1AQ02539 LINC00907-210ENST00000593316 847 ntTSL 3 BASIC0.24□□□□□ -2.37
HIST1H1AQ02539 AC098483.2-201ENST00000603158 454 ntBASIC0.24□□□□□ -2.37
HIST1H1AQ02539 Z83818.1-201ENST00000603584 150 ntBASIC0.24□□□□□ -2.37
HIST1H1AQ02539 AC243829.6-201ENST00000612652 106 ntBASIC0.24□□□□□ -2.37
HIST1H1AQ02539 MIR6513-201ENST00000621188 64 ntBASIC0.24□□□□□ -2.37
HIST1H1AQ02539 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC0.24□□□□□ -2.37
HIST1H1AQ02539 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.23□□□□□ -2.37
HIST1H1AQ02539 RNU6-16P-201ENST00000384385 107 ntBASIC0.23□□□□□ -2.37
HIST1H1AQ02539 RNU6-883P-201ENST00000384597 107 ntBASIC0.23□□□□□ -2.37
HIST1H1AQ02539 TMEM212-IT1-201ENST00000456146 470 ntTSL 3 BASIC0.23□□□□□ -2.37
HIST1H1AQ02539 AC048334.1-201ENST00000477975 159 ntBASIC0.23□□□□□ -2.37
HIST1H1AQ02539 AC002350.1-201ENST00000490759 375 ntBASIC0.23□□□□□ -2.37
HIST1H1AQ02539 TRAPPC2P7-201ENST00000509650 231 ntBASIC0.23□□□□□ -2.37
HIST1H1AQ02539 TSPAN19-204ENST00000532498 998 ntAPPRIS P1 TSL 5 BASIC0.23□□□□□ -2.37
HIST1H1AQ02539 LINC02258-201ENST00000551280 777 ntTSL 2 BASIC0.23□□□□□ -2.37
HIST1H1AQ02539 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC0.23□□□□□ -2.37
HIST1H1AQ02539 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC0.23□□□□□ -2.37
HIST1H1AQ02539 AC068787.1-201ENST00000623908 691 ntBASIC0.23□□□□□ -2.37
HIST1H1AQ02539 MTND4P14-201ENST00000435799 1354 ntBASIC0.22□□□□□ -2.37
HIST1H1AQ02539 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.22□□□□□ -2.37
HIST1H1AQ02539 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC0.22□□□□□ -2.37
HIST1H1AQ02539 Y_RNA.33-201ENST00000362591 102 ntBASIC0.22□□□□□ -2.37
HIST1H1AQ02539 RNU6-862P-201ENST00000362804 105 ntBASIC0.22□□□□□ -2.37
HIST1H1AQ02539 RNU1-133P-201ENST00000364867 167 ntBASIC0.22□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 120.1 ms