Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
RNF4P78317 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
RNF4P78317 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
RNF4P78317 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
RNF4P78317 OFD1P6Y-202ENST00000451061 2724 ntBASIC3.72□□□□□ -1.81
RNF4P78317 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC3.72□□□□□ -1.81
RNF4P78317 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC3.72□□□□□ -1.81
RNF4P78317 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC3.72□□□□□ -1.81
RNF4P78317 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC3.72□□□□□ -1.81
RNF4P78317 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
RNF4P78317 RNU6-545P-201ENST00000362681 104 ntBASIC3.72□□□□□ -1.81
RNF4P78317 ACEA_U3.1-201ENST00000363057 217 ntBASIC3.72□□□□□ -1.81
RNF4P78317 Y_RNA.275-201ENST00000364726 110 ntBASIC3.72□□□□□ -1.81
RNF4P78317 Y_RNA.292-201ENST00000364904 97 ntBASIC3.72□□□□□ -1.81
RNF4P78317 RHEBP3-201ENST00000411920 351 ntBASIC3.72□□□□□ -1.81
RNF4P78317 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC3.72□□□□□ -1.81
RNF4P78317 COX6CP10-201ENST00000416832 224 ntBASIC3.72□□□□□ -1.81
RNF4P78317 ARF4P2-201ENST00000430209 526 ntBASIC3.72□□□□□ -1.81
RNF4P78317 MTCO1P5-201ENST00000433573 344 ntBASIC3.72□□□□□ -1.81
RNF4P78317 POLR2KP2-201ENST00000438155 177 ntBASIC3.72□□□□□ -1.81
RNF4P78317 UQCRBP2-201ENST00000447827 297 ntBASIC3.72□□□□□ -1.81
RNF4P78317 AC087441.2-201ENST00000529141 262 ntBASIC3.72□□□□□ -1.81
RNF4P78317 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC3.72□□□□□ -1.81
RNF4P78317 MIR4286-201ENST00000580651 93 ntBASIC3.72□□□□□ -1.81
RNF4P78317 ZFP30-209ENST00000589018 444 ntTSL 5 BASIC3.72□□□□□ -1.81
RNF4P78317 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC3.72□□□□□ -1.81
RNF4P78317 AC002076.2-201ENST00000617362 122 ntBASIC3.72□□□□□ -1.81
RNF4P78317 MIR6076-201ENST00000617521 113 ntBASIC3.72□□□□□ -1.81
RNF4P78317 SNORD98-201ENST00000636377 67 ntBASIC3.72□□□□□ -1.81
RNF4P78317 DLD-214ENST00000639772 421 ntTSL 5 BASIC3.72□□□□□ -1.81
RNF4P78317 FTO-223ENST00000640179 210 ntTSL 5 BASIC3.72□□□□□ -1.81
RNF4P78317 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC3.72□□□□□ -1.81
RNF4P78317 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC3.72□□□□□ -1.81
RNF4P78317 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC3.72□□□□□ -1.81
RNF4P78317 AF127577.6-201ENST00000623352 2191 ntBASIC3.72□□□□□ -1.81
RNF4P78317 AC007496.3-201ENST00000624987 3443 ntBASIC3.72□□□□□ -1.81
RNF4P78317 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC3.71□□□□□ -1.81
RNF4P78317 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC3.71□□□□□ -1.81
RNF4P78317 TNPO1P3-201ENST00000436471 2662 ntBASIC3.71□□□□□ -1.82
RNF4P78317 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC3.71□□□□□ -1.82
RNF4P78317 MTND5P35-201ENST00000557537 1720 ntBASIC3.71□□□□□ -1.82
RNF4P78317 MIR410-201ENST00000362222 80 ntBASIC3.71□□□□□ -1.82
RNF4P78317 Y_RNA.122-201ENST00000363331 96 ntBASIC3.71□□□□□ -1.82
RNF4P78317 Y_RNA.230-201ENST00000364348 109 ntBASIC3.71□□□□□ -1.82
RNF4P78317 Y_RNA.383-201ENST00000383855 97 ntBASIC3.71□□□□□ -1.82
RNF4P78317 MIR1251-201ENST00000408552 70 ntBASIC3.71□□□□□ -1.82
RNF4P78317 RNU2-61P-201ENST00000411069 191 ntBASIC3.71□□□□□ -1.82
RNF4P78317 RPL19P1-201ENST00000411635 428 ntBASIC3.71□□□□□ -1.82
RNF4P78317 RPS26P42-201ENST00000413485 326 ntBASIC3.71□□□□□ -1.82
RNF4P78317 TBCAP1-201ENST00000436520 327 ntBASIC3.71□□□□□ -1.82
RNF4P78317 HMGB1P37-201ENST00000439613 609 ntBASIC3.71□□□□□ -1.82
RNF4P78317 AC009237.7-201ENST00000447357 229 ntBASIC3.71□□□□□ -1.82
RNF4P78317 RNU7-120P-201ENST00000459334 63 ntBASIC3.71□□□□□ -1.82
RNF4P78317 RNU6-625P-201ENST00000459412 107 ntBASIC3.71□□□□□ -1.82
RNF4P78317 AC107626.1-201ENST00000471084 183 ntBASIC3.71□□□□□ -1.82
RNF4P78317 RNU6-966P-201ENST00000516479 104 ntBASIC3.71□□□□□ -1.82
RNF4P78317 Y_RNA.683-201ENST00000516508 93 ntBASIC3.71□□□□□ -1.82
RNF4P78317 RNA5SP54-201ENST00000516951 92 ntBASIC3.71□□□□□ -1.82
RNF4P78317 IGKV2-38-201ENST00000517443 247 ntBASIC3.71□□□□□ -1.82
RNF4P78317 AC022559.1-201ENST00000520905 205 ntBASIC3.71□□□□□ -1.82
RNF4P78317 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC3.71□□□□□ -1.82
RNF4P78317 MZT1P2-201ENST00000604387 248 ntBASIC3.71□□□□□ -1.82
RNF4P78317 AC012603.1-201ENST00000606424 528 ntBASIC3.71□□□□□ -1.82
RNF4P78317 TEX41-243ENST00000614173 190 ntTSL 5 BASIC3.71□□□□□ -1.82
RNF4P78317 MIR6875-201ENST00000617506 72 ntBASIC3.71□□□□□ -1.82
RNF4P78317 MIR6500-201ENST00000622700 86 ntBASIC3.71□□□□□ -1.82
RNF4P78317 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
RNF4P78317 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC3.71□□□□□ -1.82
RNF4P78317 MUC7-201ENST00000304887 2443 ntAPPRIS P2 TSL 1 (best) BASIC3.71□□□□□ -1.82
RNF4P78317 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC3.7□□□□□ -1.82
RNF4P78317 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC3.7□□□□□ -1.82
RNF4P78317 SEC23A-202ENST00000537403 4215 ntTSL 2 BASIC3.7□□□□□ -1.82
RNF4P78317 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC3.7□□□□□ -1.82
RNF4P78317 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC3.7□□□□□ -1.82
RNF4P78317 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC3.7□□□□□ -1.82
RNF4P78317 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
RNF4P78317 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
RNF4P78317 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
RNF4P78317 RNU1-35P-201ENST00000362782 153 ntBASIC3.7□□□□□ -1.82
RNF4P78317 SNORA72.2-201ENST00000365028 127 ntBASIC3.7□□□□□ -1.82
RNF4P78317 RNY4P28-201ENST00000365281 93 ntBASIC3.7□□□□□ -1.82
RNF4P78317 RNU1-64P-201ENST00000365443 163 ntBASIC3.7□□□□□ -1.82
RNF4P78317 RNU6-47P-201ENST00000383866 107 ntBASIC3.7□□□□□ -1.82
RNF4P78317 MIR208B-201ENST00000401172 77 ntBASIC3.7□□□□□ -1.82
RNF4P78317 AL390729.2-201ENST00000416137 156 ntBASIC3.7□□□□□ -1.82
RNF4P78317 PTGES3P4-201ENST00000426243 356 ntBASIC3.7□□□□□ -1.82
RNF4P78317 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC3.7□□□□□ -1.82
RNF4P78317 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC3.7□□□□□ -1.82
RNF4P78317 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC3.7□□□□□ -1.82
RNF4P78317 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC3.7□□□□□ -1.82
RNF4P78317 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC3.7□□□□□ -1.82
RNF4P78317 RNU6-861P-201ENST00000516745 106 ntBASIC3.7□□□□□ -1.82
RNF4P78317 RNU6-255P-201ENST00000516957 105 ntBASIC3.7□□□□□ -1.82
RNF4P78317 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC3.7□□□□□ -1.82
RNF4P78317 AL360157.1-201ENST00000565962 87 ntBASIC3.7□□□□□ -1.82
RNF4P78317 AL606490.9-201ENST00000603331 271 ntBASIC3.7□□□□□ -1.82
RNF4P78317 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC3.7□□□□□ -1.82
RNF4P78317 U2.22-201ENST00000636441 106 ntBASIC3.7□□□□□ -1.82
RNF4P78317 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC3.7□□□□□ -1.82
RNF4P78317 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC3.7□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 152.7 ms