Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 GTF2IP13-201ENST00000438487 386 ntBASIC2.17□□□□□ -2.06
TNFRSF4P43489 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC2.17□□□□□ -2.06
TNFRSF4P43489 AC124916.1-201ENST00000444020 547 ntBASIC2.17□□□□□ -2.06
TNFRSF4P43489 PRPS1P1-201ENST00000445305 876 ntBASIC2.17□□□□□ -2.06
TNFRSF4P43489 RNU7-180P-201ENST00000459240 63 ntBASIC2.17□□□□□ -2.06
TNFRSF4P43489 AC092989.1-201ENST00000481235 277 ntBASIC2.17□□□□□ -2.06
TNFRSF4P43489 AP001025.1-201ENST00000486139 332 ntBASIC2.17□□□□□ -2.06
TNFRSF4P43489 RPS27P27-201ENST00000498779 255 ntBASIC2.17□□□□□ -2.06
TNFRSF4P43489 RPL38P4-201ENST00000502376 214 ntBASIC2.17□□□□□ -2.06
TNFRSF4P43489 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC2.17□□□□□ -2.06
TNFRSF4P43489 RNU2-53P-201ENST00000516257 147 ntBASIC2.17□□□□□ -2.06
TNFRSF4P43489 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC2.17□□□□□ -2.06
TNFRSF4P43489 IL7-206ENST00000520269 456 ntTSL 3 BASIC2.17□□□□□ -2.06
TNFRSF4P43489 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC2.17□□□□□ -2.06
TNFRSF4P43489 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC2.17□□□□□ -2.06
TNFRSF4P43489 AC025917.1-202ENST00000566344 635 ntTSL 5 BASIC2.17□□□□□ -2.06
TNFRSF4P43489 AC090897.2-201ENST00000581715 130 ntBASIC2.17□□□□□ -2.06
TNFRSF4P43489 RPL30P11-203ENST00000598995 310 ntBASIC2.17□□□□□ -2.06
TNFRSF4P43489 AL356575.1-201ENST00000603008 283 ntBASIC2.17□□□□□ -2.06
TNFRSF4P43489 AL713866.2-201ENST00000603579 219 ntBASIC2.17□□□□□ -2.06
TNFRSF4P43489 AC025754.2-201ENST00000606491 432 ntBASIC2.17□□□□□ -2.06
TNFRSF4P43489 SNORD14A-201ENST00000606526 91 ntBASIC2.17□□□□□ -2.06
TNFRSF4P43489 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC2.17□□□□□ -2.06
TNFRSF4P43489 RMST_7.1-201ENST00000621935 268 ntBASIC2.17□□□□□ -2.06
TNFRSF4P43489 MIR1321-201ENST00000637766 79 ntBASIC2.17□□□□□ -2.06
TNFRSF4P43489 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
TNFRSF4P43489 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.17□□□□□ -2.06
TNFRSF4P43489 Z82209.1-201ENST00000422141 2135 ntBASIC2.17□□□□□ -2.06
TNFRSF4P43489 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC2.17□□□□□ -2.06
TNFRSF4P43489 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC2.16□□□□□ -2.06
TNFRSF4P43489 SNORD56.1-201ENST00000362913 68 ntBASIC2.16□□□□□ -2.06
TNFRSF4P43489 Y_RNA.324-201ENST00000365165 102 ntBASIC2.16□□□□□ -2.06
TNFRSF4P43489 Y_RNA.453-201ENST00000384223 109 ntBASIC2.16□□□□□ -2.06
TNFRSF4P43489 CD3D-202ENST00000392884 476 ntTSL 2 BASIC2.16□□□□□ -2.06
TNFRSF4P43489 RNU6ATAC25P-201ENST00000408798 117 ntBASIC2.16□□□□□ -2.06
TNFRSF4P43489 CYCSP33-201ENST00000414485 327 ntBASIC2.16□□□□□ -2.06
TNFRSF4P43489 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC2.16□□□□□ -2.06
TNFRSF4P43489 AL121601.2-201ENST00000438019 707 ntBASIC2.16□□□□□ -2.06
TNFRSF4P43489 RPL39P40-201ENST00000445481 146 ntBASIC2.16□□□□□ -2.06
TNFRSF4P43489 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC2.16□□□□□ -2.06
TNFRSF4P43489 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC2.16□□□□□ -2.06
TNFRSF4P43489 RNU6-1038P-201ENST00000516516 104 ntBASIC2.16□□□□□ -2.06
TNFRSF4P43489 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC2.16□□□□□ -2.06
TNFRSF4P43489 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC2.16□□□□□ -2.06
TNFRSF4P43489 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC2.16□□□□□ -2.06
TNFRSF4P43489 MIR4446-201ENST00000578505 67 ntBASIC2.16□□□□□ -2.06
TNFRSF4P43489 AC107304.1-201ENST00000604229 296 ntBASIC2.16□□□□□ -2.06
TNFRSF4P43489 AC009318.2-201ENST00000610917 651 ntBASIC2.16□□□□□ -2.06
TNFRSF4P43489 U6atac.1-201ENST00000616025 117 ntBASIC2.16□□□□□ -2.06
TNFRSF4P43489 FER-210ENST00000628534 558 ntTSL 5 BASIC2.16□□□□□ -2.06
TNFRSF4P43489 FO624990.1-201ENST00000636373 85 ntBASIC2.16□□□□□ -2.06
TNFRSF4P43489 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC2.16□□□□□ -2.06
TNFRSF4P43489 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
TNFRSF4P43489 ZNF72P-201ENST00000425869 1908 ntBASIC2.15□□□□□ -2.06
TNFRSF4P43489 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.15□□□□□ -2.06
TNFRSF4P43489 Y_RNA.38-201ENST00000362617 102 ntBASIC2.15□□□□□ -2.07
TNFRSF4P43489 RNY4P14-201ENST00000363656 96 ntBASIC2.15□□□□□ -2.07
TNFRSF4P43489 RNU6-1303P-201ENST00000364841 107 ntBASIC2.15□□□□□ -2.07
TNFRSF4P43489 SNORA16.2-201ENST00000390991 127 ntBASIC2.15□□□□□ -2.07
TNFRSF4P43489 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC2.15□□□□□ -2.07
TNFRSF4P43489 AC008267.5-201ENST00000424928 265 ntBASIC2.15□□□□□ -2.07
TNFRSF4P43489 USP9YP18-201ENST00000425912 695 ntBASIC2.15□□□□□ -2.07
TNFRSF4P43489 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC2.15□□□□□ -2.07
TNFRSF4P43489 MTATP6P13-201ENST00000438531 667 ntBASIC2.15□□□□□ -2.07
TNFRSF4P43489 AC009238.1-201ENST00000442165 424 ntBASIC2.15□□□□□ -2.07
TNFRSF4P43489 AC009237.6-201ENST00000446969 424 ntBASIC2.15□□□□□ -2.07
TNFRSF4P43489 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC2.15□□□□□ -2.07
TNFRSF4P43489 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC2.15□□□□□ -2.07
TNFRSF4P43489 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC2.15□□□□□ -2.07
TNFRSF4P43489 AC116337.1-201ENST00000509680 687 ntBASIC2.15□□□□□ -2.07
TNFRSF4P43489 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC2.15□□□□□ -2.07
TNFRSF4P43489 HMGB3P3-201ENST00000510526 400 ntBASIC2.15□□□□□ -2.07
TNFRSF4P43489 AC011352.1-201ENST00000512300 793 ntBASIC2.15□□□□□ -2.07
TNFRSF4P43489 RNU2-69P-201ENST00000516061 100 ntBASIC2.15□□□□□ -2.07
TNFRSF4P43489 RNU6-826P-201ENST00000516827 104 ntBASIC2.15□□□□□ -2.07
TNFRSF4P43489 AP000889.2-201ENST00000532684 490 ntBASIC2.15□□□□□ -2.07
TNFRSF4P43489 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC2.15□□□□□ -2.07
TNFRSF4P43489 AL138976.2-201ENST00000563989 694 ntBASIC2.15□□□□□ -2.07
TNFRSF4P43489 MIR3670-2-201ENST00000582974 65 ntBASIC2.15□□□□□ -2.07
TNFRSF4P43489 MIR3670-1-201ENST00000584160 65 ntBASIC2.15□□□□□ -2.07
TNFRSF4P43489 MIR3670-3-201ENST00000584855 65 ntBASIC2.15□□□□□ -2.07
TNFRSF4P43489 AC113137.1-201ENST00000591869 558 ntTSL 4 BASIC2.15□□□□□ -2.07
TNFRSF4P43489 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC2.15□□□□□ -2.07
TNFRSF4P43489 U2.17-201ENST00000611454 95 ntBASIC2.15□□□□□ -2.07
TNFRSF4P43489 MIR3670-4-201ENST00000612260 65 ntBASIC2.15□□□□□ -2.07
TNFRSF4P43489 AC245884.12-201ENST00000615364 59 ntBASIC2.15□□□□□ -2.07
TNFRSF4P43489 AC007792.1-201ENST00000623023 402 ntBASIC2.15□□□□□ -2.07
TNFRSF4P43489 AC022418.1-201ENST00000624118 445 ntBASIC2.15□□□□□ -2.07
TNFRSF4P43489 Z69720.2-201ENST00000624755 279 ntBASIC2.15□□□□□ -2.07
TNFRSF4P43489 AP003400.5-201ENST00000624827 617 ntBASIC2.15□□□□□ -2.07
TNFRSF4P43489 MIR3688-2-201ENST00000636963 87 ntBASIC2.15□□□□□ -2.07
TNFRSF4P43489 ZNF271P-202ENST00000465539 1970 ntBASIC2.15□□□□□ -2.07
TNFRSF4P43489 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC2.15□□□□□ -2.07
TNFRSF4P43489 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC2.14□□□□□ -2.07
TNFRSF4P43489 OR4G1P-203ENST00000641984 1631 ntBASIC2.14□□□□□ -2.07
TNFRSF4P43489 AL356292.1-201ENST00000283110 373 ntBASIC2.14□□□□□ -2.07
TNFRSF4P43489 RNU6-655P-201ENST00000362858 107 ntBASIC2.14□□□□□ -2.07
TNFRSF4P43489 RNU6-527P-201ENST00000363425 104 ntBASIC2.14□□□□□ -2.07
TNFRSF4P43489 RNU6-877P-201ENST00000383868 107 ntBASIC2.14□□□□□ -2.07
TNFRSF4P43489 Y_RNA.480-201ENST00000384364 102 ntBASIC2.14□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 183.6 ms