Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC4.36□□□□□ -1.71
CCDC9Q9Y3X0 RNU6-559P-201ENST00000516151 98 ntBASIC4.36□□□□□ -1.71
CCDC9Q9Y3X0 RNU6-277P-201ENST00000516272 106 ntBASIC4.36□□□□□ -1.71
CCDC9Q9Y3X0 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC4.36□□□□□ -1.71
CCDC9Q9Y3X0 MIR4273-201ENST00000582824 84 ntBASIC4.36□□□□□ -1.71
CCDC9Q9Y3X0 UBL5P2-201ENST00000583788 219 ntBASIC4.36□□□□□ -1.71
CCDC9Q9Y3X0 MIR4719-201ENST00000585233 84 ntBASIC4.36□□□□□ -1.71
CCDC9Q9Y3X0 AL356280.1-201ENST00000603614 379 ntBASIC4.36□□□□□ -1.71
CCDC9Q9Y3X0 AC112487.2-201ENST00000637950 304 ntBASIC4.36□□□□□ -1.71
CCDC9Q9Y3X0 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC4.36□□□□□ -1.71
CCDC9Q9Y3X0 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC4.36□□□□□ -1.71
CCDC9Q9Y3X0 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
CCDC9Q9Y3X0 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
CCDC9Q9Y3X0 RNU4-82P-201ENST00000362443 140 ntBASIC4.35□□□□□ -1.71
CCDC9Q9Y3X0 Y_RNA.40-201ENST00000362645 93 ntBASIC4.35□□□□□ -1.71
CCDC9Q9Y3X0 RNU4-56P-201ENST00000364700 142 ntBASIC4.35□□□□□ -1.71
CCDC9Q9Y3X0 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC4.35□□□□□ -1.71
CCDC9Q9Y3X0 RNU6-370P-201ENST00000411008 104 ntBASIC4.35□□□□□ -1.71
CCDC9Q9Y3X0 AC008267.5-201ENST00000424928 265 ntBASIC4.35□□□□□ -1.71
CCDC9Q9Y3X0 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC4.35□□□□□ -1.71
CCDC9Q9Y3X0 AC006539.3-201ENST00000454258 129 ntBASIC4.35□□□□□ -1.71
CCDC9Q9Y3X0 RPS4XP22-201ENST00000480755 780 ntBASIC4.35□□□□□ -1.71
CCDC9Q9Y3X0 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC4.35□□□□□ -1.71
CCDC9Q9Y3X0 RPL30P1-201ENST00000488676 339 ntBASIC4.35□□□□□ -1.71
CCDC9Q9Y3X0 AIG1P1-201ENST00000503376 148 ntBASIC4.35□□□□□ -1.71
CCDC9Q9Y3X0 AC091874.1-201ENST00000511402 339 ntBASIC4.35□□□□□ -1.71
CCDC9Q9Y3X0 AC026782.1-201ENST00000512952 449 ntBASIC4.35□□□□□ -1.71
CCDC9Q9Y3X0 RNU6-56P-201ENST00000516986 93 ntBASIC4.35□□□□□ -1.71
CCDC9Q9Y3X0 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC4.35□□□□□ -1.71
CCDC9Q9Y3X0 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC4.35□□□□□ -1.71
CCDC9Q9Y3X0 AL355375.2-201ENST00000574825 175 ntBASIC4.35□□□□□ -1.71
CCDC9Q9Y3X0 MTCO3P13-201ENST00000577757 781 ntBASIC4.35□□□□□ -1.71
CCDC9Q9Y3X0 RPL30P11-203ENST00000598995 310 ntBASIC4.35□□□□□ -1.71
CCDC9Q9Y3X0 AL157817.1-201ENST00000614264 790 ntBASIC4.35□□□□□ -1.71
CCDC9Q9Y3X0 DLEU2_5.1-201ENST00000615567 84 ntBASIC4.35□□□□□ -1.71
CCDC9Q9Y3X0 ZNF736P3Y-201ENST00000428264 1465 ntBASIC4.35□□□□□ -1.71
CCDC9Q9Y3X0 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
CCDC9Q9Y3X0 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC4.35□□□□□ -1.71
CCDC9Q9Y3X0 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
CCDC9Q9Y3X0 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC4.34□□□□□ -1.71
CCDC9Q9Y3X0 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC4.34□□□□□ -1.71
CCDC9Q9Y3X0 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC4.34□□□□□ -1.71
CCDC9Q9Y3X0 RNU6-1297P-201ENST00000384415 104 ntBASIC4.34□□□□□ -1.71
CCDC9Q9Y3X0 AL591034.2-201ENST00000402839 359 ntBASIC4.34□□□□□ -1.71
CCDC9Q9Y3X0 Y_RNA.594-201ENST00000410373 140 ntBASIC4.34□□□□□ -1.71
CCDC9Q9Y3X0 RNU6-1050P-201ENST00000410388 107 ntBASIC4.34□□□□□ -1.71
CCDC9Q9Y3X0 AC126124.2-201ENST00000413542 321 ntBASIC4.34□□□□□ -1.71
CCDC9Q9Y3X0 EEF1A1P41-201ENST00000414667 207 ntBASIC4.34□□□□□ -1.71
CCDC9Q9Y3X0 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC4.34□□□□□ -1.71
CCDC9Q9Y3X0 LINC00411-201ENST00000436722 461 ntTSL 3 BASIC4.34□□□□□ -1.71
CCDC9Q9Y3X0 AC080013.2-201ENST00000460866 323 ntBASIC4.34□□□□□ -1.71
CCDC9Q9Y3X0 RNU4ATAC7P-201ENST00000516280 125 ntBASIC4.34□□□□□ -1.71
CCDC9Q9Y3X0 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC4.34□□□□□ -1.71
CCDC9Q9Y3X0 MIR3136-201ENST00000583498 78 ntBASIC4.34□□□□□ -1.71
CCDC9Q9Y3X0 MIR486-1-201ENST00000612171 68 ntBASIC4.34□□□□□ -1.71
CCDC9Q9Y3X0 AC073544.1-201ENST00000600110 1595 ntBASIC4.34□□□□□ -1.71
CCDC9Q9Y3X0 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.72
CCDC9Q9Y3X0 AC000403.1-201ENST00000613696 3585 ntBASIC4.33□□□□□ -1.72
CCDC9Q9Y3X0 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
CCDC9Q9Y3X0 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC4.33□□□□□ -1.72
CCDC9Q9Y3X0 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC4.33□□□□□ -1.72
CCDC9Q9Y3X0 HMGN2P8-201ENST00000391458 268 ntBASIC4.33□□□□□ -1.72
CCDC9Q9Y3X0 FO393413.1-201ENST00000402892 195 ntBASIC4.33□□□□□ -1.72
CCDC9Q9Y3X0 RNU4-14P-201ENST00000410858 122 ntBASIC4.33□□□□□ -1.72
CCDC9Q9Y3X0 RNU6-954P-201ENST00000411355 107 ntBASIC4.33□□□□□ -1.72
CCDC9Q9Y3X0 AL590135.1-201ENST00000422215 156 ntBASIC4.33□□□□□ -1.72
CCDC9Q9Y3X0 AC019205.3-201ENST00000424573 156 ntBASIC4.33□□□□□ -1.72
CCDC9Q9Y3X0 AC104332.2-201ENST00000429959 156 ntBASIC4.33□□□□□ -1.72
CCDC9Q9Y3X0 AC092427.1-202ENST00000430569 476 ntBASIC4.33□□□□□ -1.72
CCDC9Q9Y3X0 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC4.33□□□□□ -1.72
CCDC9Q9Y3X0 AC016700.2-201ENST00000446011 156 ntBASIC4.33□□□□□ -1.72
CCDC9Q9Y3X0 TRBV12-1-201ENST00000479785 344 ntBASIC4.33□□□□□ -1.72
CCDC9Q9Y3X0 AC015911.1-201ENST00000495111 156 ntBASIC4.33□□□□□ -1.72
CCDC9Q9Y3X0 AC022447.4-201ENST00000504053 364 ntBASIC4.33□□□□□ -1.72
CCDC9Q9Y3X0 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC4.33□□□□□ -1.72
CCDC9Q9Y3X0 IGHVII-53-1-201ENST00000519538 255 ntBASIC4.33□□□□□ -1.72
CCDC9Q9Y3X0 RAB11AP2-201ENST00000545905 639 ntBASIC4.33□□□□□ -1.72
CCDC9Q9Y3X0 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC4.33□□□□□ -1.72
CCDC9Q9Y3X0 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
CCDC9Q9Y3X0 SNORD98-201ENST00000636377 67 ntBASIC4.33□□□□□ -1.72
CCDC9Q9Y3X0 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC4.33□□□□□ -1.72
CCDC9Q9Y3X0 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
CCDC9Q9Y3X0 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC4.33□□□□□ -1.72
CCDC9Q9Y3X0 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC4.32□□□□□ -1.72
CCDC9Q9Y3X0 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC4.32□□□□□ -1.72
CCDC9Q9Y3X0 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
CCDC9Q9Y3X0 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC4.32□□□□□ -1.72
CCDC9Q9Y3X0 RNU6-1059P-201ENST00000363752 98 ntBASIC4.32□□□□□ -1.72
CCDC9Q9Y3X0 RNA5SP42-201ENST00000364278 115 ntBASIC4.32□□□□□ -1.72
CCDC9Q9Y3X0 SNORD56.5-201ENST00000364281 72 ntBASIC4.32□□□□□ -1.72
CCDC9Q9Y3X0 SNORA71.1-201ENST00000364523 117 ntBASIC4.32□□□□□ -1.72
CCDC9Q9Y3X0 RNU6-596P-201ENST00000365395 98 ntBASIC4.32□□□□□ -1.72
CCDC9Q9Y3X0 RNU6-784P-201ENST00000384330 106 ntBASIC4.32□□□□□ -1.72
CCDC9Q9Y3X0 RNU1-89P-201ENST00000384592 164 ntBASIC4.32□□□□□ -1.72
CCDC9Q9Y3X0 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC4.32□□□□□ -1.72
CCDC9Q9Y3X0 RPL31P12-201ENST00000422587 358 ntBASIC4.32□□□□□ -1.72
CCDC9Q9Y3X0 EIF4EP2-201ENST00000422816 654 ntBASIC4.32□□□□□ -1.72
CCDC9Q9Y3X0 AIMP1P2-201ENST00000425294 312 ntBASIC4.32□□□□□ -1.72
CCDC9Q9Y3X0 ATP5HP2-201ENST00000433885 485 ntBASIC4.32□□□□□ -1.72
CCDC9Q9Y3X0 AL445687.1-201ENST00000439946 251 ntBASIC4.32□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 165.4 ms