Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC4.71□□□□□ -1.66
CHMP3Q9Y3E7 AK6P2-201ENST00000549020 471 ntBASIC4.71□□□□□ -1.66
CHMP3Q9Y3E7 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC4.71□□□□□ -1.66
CHMP3Q9Y3E7 MIR4444-1-201ENST00000581696 74 ntBASIC4.71□□□□□ -1.66
CHMP3Q9Y3E7 MIR4282-201ENST00000583613 67 ntBASIC4.71□□□□□ -1.66
CHMP3Q9Y3E7 MIR4444-2-201ENST00000584390 74 ntBASIC4.71□□□□□ -1.66
CHMP3Q9Y3E7 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC4.71□□□□□ -1.66
CHMP3Q9Y3E7 KLKP1-201ENST00000595979 403 ntBASIC4.71□□□□□ -1.66
CHMP3Q9Y3E7 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC4.71□□□□□ -1.66
CHMP3Q9Y3E7 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC4.71□□□□□ -1.66
CHMP3Q9Y3E7 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC4.71□□□□□ -1.66
CHMP3Q9Y3E7 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC4.7□□□□□ -1.66
CHMP3Q9Y3E7 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC4.7□□□□□ -1.66
CHMP3Q9Y3E7 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC4.7□□□□□ -1.66
CHMP3Q9Y3E7 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC4.7□□□□□ -1.66
CHMP3Q9Y3E7 DTWD1-201ENST00000251250 13776 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
CHMP3Q9Y3E7 Y_RNA.8-201ENST00000362353 102 ntBASIC4.7□□□□□ -1.66
CHMP3Q9Y3E7 RNU5B-2P-201ENST00000363036 113 ntBASIC4.7□□□□□ -1.66
CHMP3Q9Y3E7 RNU6-923P-201ENST00000364753 107 ntBASIC4.7□□□□□ -1.66
CHMP3Q9Y3E7 RNA5SP167-201ENST00000365461 116 ntBASIC4.7□□□□□ -1.66
CHMP3Q9Y3E7 CRP-203ENST00000368111 512 ntTSL 3 BASIC4.7□□□□□ -1.66
CHMP3Q9Y3E7 Y_RNA.570-201ENST00000384750 101 ntBASIC4.7□□□□□ -1.66
CHMP3Q9Y3E7 MIR493-201ENST00000385254 89 ntBASIC4.7□□□□□ -1.66
CHMP3Q9Y3E7 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC4.7□□□□□ -1.66
CHMP3Q9Y3E7 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
CHMP3Q9Y3E7 PVALB-202ENST00000404171 422 ntTSL 2 BASIC4.7□□□□□ -1.66
CHMP3Q9Y3E7 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC4.7□□□□□ -1.66
CHMP3Q9Y3E7 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC4.7□□□□□ -1.66
CHMP3Q9Y3E7 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC4.7□□□□□ -1.66
CHMP3Q9Y3E7 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC4.7□□□□□ -1.66
CHMP3Q9Y3E7 RPL21P104-201ENST00000464143 478 ntBASIC4.7□□□□□ -1.66
CHMP3Q9Y3E7 AC104619.4-201ENST00000510773 249 ntBASIC4.7□□□□□ -1.66
CHMP3Q9Y3E7 Y_RNA.662-201ENST00000516028 97 ntBASIC4.7□□□□□ -1.66
CHMP3Q9Y3E7 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
CHMP3Q9Y3E7 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC4.7□□□□□ -1.66
CHMP3Q9Y3E7 AC008749.1-201ENST00000597650 306 ntBASIC4.7□□□□□ -1.66
CHMP3Q9Y3E7 MZT1P2-201ENST00000604387 248 ntBASIC4.7□□□□□ -1.66
CHMP3Q9Y3E7 AC104465.1-201ENST00000611365 139 ntBASIC4.7□□□□□ -1.66
CHMP3Q9Y3E7 U2.21-201ENST00000637295 81 ntBASIC4.7□□□□□ -1.66
CHMP3Q9Y3E7 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC4.7□□□□□ -1.66
CHMP3Q9Y3E7 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
CHMP3Q9Y3E7 AC010733.2-201ENST00000589496 5702 ntBASIC4.69□□□□□ -1.66
CHMP3Q9Y3E7 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
CHMP3Q9Y3E7 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC4.69□□□□□ -1.66
CHMP3Q9Y3E7 AC008725.1-201ENST00000605123 2263 ntBASIC4.69□□□□□ -1.66
CHMP3Q9Y3E7 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
CHMP3Q9Y3E7 SNORD56.1-201ENST00000362913 68 ntBASIC4.69□□□□□ -1.66
CHMP3Q9Y3E7 Y_RNA.319-201ENST00000365138 92 ntBASIC4.69□□□□□ -1.66
CHMP3Q9Y3E7 RNU6-281P-201ENST00000384212 103 ntBASIC4.69□□□□□ -1.66
CHMP3Q9Y3E7 SNORA36A-201ENST00000384221 132 ntBASIC4.69□□□□□ -1.66
CHMP3Q9Y3E7 RNU6-918P-201ENST00000391219 106 ntBASIC4.69□□□□□ -1.66
CHMP3Q9Y3E7 HLFP1-201ENST00000402375 499 ntBASIC4.69□□□□□ -1.66
CHMP3Q9Y3E7 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC4.69□□□□□ -1.66
CHMP3Q9Y3E7 MTCO1P5-201ENST00000433573 344 ntBASIC4.69□□□□□ -1.66
CHMP3Q9Y3E7 AC009237.7-201ENST00000447357 229 ntBASIC4.69□□□□□ -1.66
CHMP3Q9Y3E7 Y_RNA.638-201ENST00000459374 113 ntBASIC4.69□□□□□ -1.66
CHMP3Q9Y3E7 AC091021.1-201ENST00000468051 388 ntBASIC4.69□□□□□ -1.66
CHMP3Q9Y3E7 MIR5187-201ENST00000583479 76 ntBASIC4.69□□□□□ -1.66
CHMP3Q9Y3E7 AC025946.2-201ENST00000603398 234 ntBASIC4.69□□□□□ -1.66
CHMP3Q9Y3E7 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC4.69□□□□□ -1.66
CHMP3Q9Y3E7 AL353743.1-202ENST00000431724 1695 ntBASIC4.69□□□□□ -1.66
CHMP3Q9Y3E7 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
CHMP3Q9Y3E7 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
CHMP3Q9Y3E7 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
CHMP3Q9Y3E7 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
CHMP3Q9Y3E7 RNU6-778P-201ENST00000363269 103 ntBASIC4.68□□□□□ -1.66
CHMP3Q9Y3E7 Y_RNA.233-201ENST00000364407 101 ntBASIC4.68□□□□□ -1.66
CHMP3Q9Y3E7 RNU6-1175P-201ENST00000365200 107 ntBASIC4.68□□□□□ -1.66
CHMP3Q9Y3E7 RNU6-1289P-201ENST00000384431 106 ntBASIC4.68□□□□□ -1.66
CHMP3Q9Y3E7 MIR329-1-201ENST00000385028 80 ntBASIC4.68□□□□□ -1.66
CHMP3Q9Y3E7 RPL23AP95-201ENST00000426806 265 ntBASIC4.68□□□□□ -1.66
CHMP3Q9Y3E7 YME1L1P1-201ENST00000429435 297 ntBASIC4.68□□□□□ -1.66
CHMP3Q9Y3E7 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC4.68□□□□□ -1.66
CHMP3Q9Y3E7 AC117440.1-201ENST00000474107 571 ntBASIC4.68□□□□□ -1.66
CHMP3Q9Y3E7 AC026403.1-201ENST00000518938 295 ntBASIC4.68□□□□□ -1.66
CHMP3Q9Y3E7 AL713866.2-201ENST00000603579 219 ntBASIC4.68□□□□□ -1.66
CHMP3Q9Y3E7 AC024220.1-201ENST00000603675 484 ntBASIC4.68□□□□□ -1.66
CHMP3Q9Y3E7 SNORA62.6-201ENST00000606322 83 ntBASIC4.68□□□□□ -1.66
CHMP3Q9Y3E7 SNORA51-201ENST00000606420 132 ntBASIC4.68□□□□□ -1.66
CHMP3Q9Y3E7 AC004832.4-201ENST00000608952 331 ntBASIC4.68□□□□□ -1.66
CHMP3Q9Y3E7 FTX_3.1-201ENST00000610451 147 ntBASIC4.68□□□□□ -1.66
CHMP3Q9Y3E7 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC4.68□□□□□ -1.66
CHMP3Q9Y3E7 Xist_exon1.1-201ENST00000618930 85 ntBASIC4.68□□□□□ -1.66
CHMP3Q9Y3E7 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC4.68□□□□□ -1.66
CHMP3Q9Y3E7 UBE3AP2-201ENST00000429033 2259 ntBASIC4.68□□□□□ -1.66
CHMP3Q9Y3E7 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC4.68□□□□□ -1.66
CHMP3Q9Y3E7 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
CHMP3Q9Y3E7 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
CHMP3Q9Y3E7 AL353746.1-201ENST00000566293 6881 ntBASIC4.68□□□□□ -1.66
CHMP3Q9Y3E7 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC4.67□□□□□ -1.66
CHMP3Q9Y3E7 AC006504.1-201ENST00000562493 3666 ntBASIC4.67□□□□□ -1.66
CHMP3Q9Y3E7 IPO8P1-201ENST00000455509 3109 ntBASIC4.67□□□□□ -1.66
CHMP3Q9Y3E7 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
CHMP3Q9Y3E7 RNU6-514P-201ENST00000384208 107 ntBASIC4.67□□□□□ -1.66
CHMP3Q9Y3E7 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC4.67□□□□□ -1.66
CHMP3Q9Y3E7 AL512844.2-201ENST00000433990 593 ntBASIC4.67□□□□□ -1.66
CHMP3Q9Y3E7 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC4.67□□□□□ -1.66
CHMP3Q9Y3E7 AC091153.1-201ENST00000466297 402 ntBASIC4.67□□□□□ -1.66
CHMP3Q9Y3E7 RNU7-200P-201ENST00000516105 62 ntBASIC4.67□□□□□ -1.66
CHMP3Q9Y3E7 RNU4ATAC6P-201ENST00000516592 126 ntBASIC4.67□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 112.7 ms