Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 MIR1261-201ENST00000408659 82 ntBASIC2.05□□□□□ -2.08
LHX3Q9UBR4 RNU6-1245P-201ENST00000411130 106 ntBASIC2.05□□□□□ -2.08
LHX3Q9UBR4 RNA5SP270-201ENST00000411361 118 ntBASIC2.05□□□□□ -2.08
LHX3Q9UBR4 AC010975.2-201ENST00000427781 588 ntBASIC2.05□□□□□ -2.08
LHX3Q9UBR4 AC027124.2-201ENST00000428249 105 ntBASIC2.05□□□□□ -2.08
LHX3Q9UBR4 RPL39P29-201ENST00000447779 157 ntBASIC2.05□□□□□ -2.08
LHX3Q9UBR4 AC073415.1-201ENST00000449240 153 ntBASIC2.05□□□□□ -2.08
LHX3Q9UBR4 AL513124.1-201ENST00000450410 614 ntBASIC2.05□□□□□ -2.08
LHX3Q9UBR4 AL122001.1-201ENST00000457027 370 ntBASIC2.05□□□□□ -2.08
LHX3Q9UBR4 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC2.05□□□□□ -2.08
LHX3Q9UBR4 AC107222.1-201ENST00000510899 637 ntBASIC2.05□□□□□ -2.08
LHX3Q9UBR4 MTND3P5-201ENST00000512798 333 ntBASIC2.05□□□□□ -2.08
LHX3Q9UBR4 HSPE1P18-201ENST00000517602 280 ntBASIC2.05□□□□□ -2.08
LHX3Q9UBR4 AP001893.2-201ENST00000526949 202 ntBASIC2.05□□□□□ -2.08
LHX3Q9UBR4 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC2.05□□□□□ -2.08
LHX3Q9UBR4 NTS-203ENST00000551529 801 ntTSL 3 BASIC2.05□□□□□ -2.08
LHX3Q9UBR4 PRELID2P1-201ENST00000552837 301 ntBASIC2.05□□□□□ -2.08
LHX3Q9UBR4 AC024909.2-201ENST00000553035 286 ntBASIC2.05□□□□□ -2.08
LHX3Q9UBR4 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC2.05□□□□□ -2.08
LHX3Q9UBR4 NDUFAF4P1-201ENST00000559425 519 ntBASIC2.05□□□□□ -2.08
LHX3Q9UBR4 MTCO3P23-201ENST00000561363 289 ntBASIC2.05□□□□□ -2.08
LHX3Q9UBR4 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC2.05□□□□□ -2.08
LHX3Q9UBR4 AC004223.2-201ENST00000590309 544 ntBASIC2.05□□□□□ -2.08
LHX3Q9UBR4 Z82243.1-201ENST00000609432 473 ntBASIC2.05□□□□□ -2.08
LHX3Q9UBR4 YWHAEP7-203ENST00000622054 312 ntBASIC2.05□□□□□ -2.08
LHX3Q9UBR4 AC139792.3-201ENST00000623525 224 ntBASIC2.05□□□□□ -2.08
LHX3Q9UBR4 AC097372.5-201ENST00000623665 376 ntBASIC2.05□□□□□ -2.08
LHX3Q9UBR4 MIR6863-201ENST00000636112 90 ntBASIC2.05□□□□□ -2.08
LHX3Q9UBR4 AL354685.2-201ENST00000448218 1447 ntBASIC2.05□□□□□ -2.08
LHX3Q9UBR4 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2.05□□□□□ -2.08
LHX3Q9UBR4 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.05□□□□□ -2.08
LHX3Q9UBR4 ZNF355P-201ENST00000427301 3216 ntBASIC2.04□□□□□ -2.08
LHX3Q9UBR4 SNORD114-1-201ENST00000362705 72 ntBASIC2.04□□□□□ -2.08
LHX3Q9UBR4 RNU6-105P-201ENST00000363909 104 ntBASIC2.04□□□□□ -2.08
LHX3Q9UBR4 Y_RNA.194-201ENST00000363985 102 ntBASIC2.04□□□□□ -2.08
LHX3Q9UBR4 RNU4-75P-201ENST00000364621 146 ntBASIC2.04□□□□□ -2.08
LHX3Q9UBR4 SNORA25B-201ENST00000365507 128 ntBASIC2.04□□□□□ -2.08
LHX3Q9UBR4 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.04□□□□□ -2.08
LHX3Q9UBR4 Y_RNA.399-201ENST00000383955 105 ntBASIC2.04□□□□□ -2.08
LHX3Q9UBR4 MIR544A-201ENST00000384855 91 ntBASIC2.04□□□□□ -2.08
LHX3Q9UBR4 MIR144-201ENST00000384886 86 ntBASIC2.04□□□□□ -2.08
LHX3Q9UBR4 SNORD56-201ENST00000413522 71 ntBASIC2.04□□□□□ -2.08
LHX3Q9UBR4 DLGAP5P1-201ENST00000430307 464 ntBASIC2.04□□□□□ -2.08
LHX3Q9UBR4 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC2.04□□□□□ -2.08
LHX3Q9UBR4 RPL23AP7-203ENST00000449021 469 ntBASIC2.04□□□□□ -2.08
LHX3Q9UBR4 AP000431.2-201ENST00000450653 790 ntTSL 2 BASIC2.04□□□□□ -2.08
LHX3Q9UBR4 AL021397.1-201ENST00000451806 248 ntBASIC2.04□□□□□ -2.08
LHX3Q9UBR4 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC2.04□□□□□ -2.08
LHX3Q9UBR4 AL163973.1-201ENST00000484753 577 ntBASIC2.04□□□□□ -2.08
LHX3Q9UBR4 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC2.04□□□□□ -2.08
LHX3Q9UBR4 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC2.04□□□□□ -2.08
LHX3Q9UBR4 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC2.04□□□□□ -2.08
LHX3Q9UBR4 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC2.04□□□□□ -2.08
LHX3Q9UBR4 SNORA25.17-201ENST00000517184 124 ntBASIC2.04□□□□□ -2.08
LHX3Q9UBR4 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC2.04□□□□□ -2.08
LHX3Q9UBR4 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC2.04□□□□□ -2.08
LHX3Q9UBR4 AC025165.5-201ENST00000602802 578 ntBASIC2.04□□□□□ -2.08
LHX3Q9UBR4 AL136363.2-201ENST00000604173 851 ntBASIC2.04□□□□□ -2.08
LHX3Q9UBR4 AC123912.5-201ENST00000605470 343 ntBASIC2.04□□□□□ -2.08
LHX3Q9UBR4 AC002044.1-201ENST00000606707 158 ntBASIC2.04□□□□□ -2.08
LHX3Q9UBR4 AL159153.1-201ENST00000619688 317 ntBASIC2.04□□□□□ -2.08
LHX3Q9UBR4 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC2.04□□□□□ -2.08
LHX3Q9UBR4 OR5AK4P-201ENST00000635912 903 ntBASIC2.04□□□□□ -2.08
LHX3Q9UBR4 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC2.04□□□□□ -2.08
LHX3Q9UBR4 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC2.04□□□□□ -2.08
LHX3Q9UBR4 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.03□□□□□ -2.08
LHX3Q9UBR4 RNU1-23P-201ENST00000363361 144 ntBASIC2.03□□□□□ -2.08
LHX3Q9UBR4 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC2.03□□□□□ -2.08
LHX3Q9UBR4 EDDM3CP-201ENST00000415977 425 ntBASIC2.03□□□□□ -2.08
LHX3Q9UBR4 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC2.03□□□□□ -2.08
LHX3Q9UBR4 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC2.03□□□□□ -2.08
LHX3Q9UBR4 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC2.03□□□□□ -2.08
LHX3Q9UBR4 RNU7-167P-201ENST00000459160 62 ntBASIC2.03□□□□□ -2.08
LHX3Q9UBR4 RPL30P1-201ENST00000488676 339 ntBASIC2.03□□□□□ -2.08
LHX3Q9UBR4 RPL38P4-201ENST00000502376 214 ntBASIC2.03□□□□□ -2.08
LHX3Q9UBR4 MTND2P33-201ENST00000506452 1031 ntBASIC2.03□□□□□ -2.08
LHX3Q9UBR4 RNA5SP82-201ENST00000516707 92 ntBASIC2.03□□□□□ -2.08
LHX3Q9UBR4 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC2.03□□□□□ -2.08
LHX3Q9UBR4 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC2.03□□□□□ -2.08
LHX3Q9UBR4 MYL12BP1-201ENST00000569826 507 ntBASIC2.03□□□□□ -2.08
LHX3Q9UBR4 MIR5089-201ENST00000580047 84 ntBASIC2.03□□□□□ -2.08
LHX3Q9UBR4 AP005671.1-201ENST00000581798 463 ntTSL 3 BASIC2.03□□□□□ -2.08
LHX3Q9UBR4 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC2.03□□□□□ -2.08
LHX3Q9UBR4 AC097065.2-201ENST00000608159 533 ntBASIC2.03□□□□□ -2.08
LHX3Q9UBR4 AC104073.3-201ENST00000610942 955 ntBASIC2.03□□□□□ -2.08
LHX3Q9UBR4 U2.17-201ENST00000611454 95 ntBASIC2.03□□□□□ -2.08
LHX3Q9UBR4 AC012640.5-201ENST00000623897 319 ntBASIC2.03□□□□□ -2.08
LHX3Q9UBR4 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC2.03□□□□□ -2.09
LHX3Q9UBR4 ATP8A2P2-201ENST00000437678 1568 ntBASIC2.02□□□□□ -2.09
LHX3Q9UBR4 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
LHX3Q9UBR4 RNU6-266P-201ENST00000364225 107 ntBASIC2.02□□□□□ -2.09
LHX3Q9UBR4 Y_RNA.255-201ENST00000364581 97 ntBASIC2.02□□□□□ -2.09
LHX3Q9UBR4 Y_RNA.436-201ENST00000384097 102 ntBASIC2.02□□□□□ -2.09
LHX3Q9UBR4 RNU6-1222P-201ENST00000384615 107 ntBASIC2.02□□□□□ -2.09
LHX3Q9UBR4 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
LHX3Q9UBR4 SNORD23.1-201ENST00000408212 104 ntBASIC2.02□□□□□ -2.09
LHX3Q9UBR4 RNU2-16P-201ENST00000410712 136 ntBASIC2.02□□□□□ -2.09
LHX3Q9UBR4 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC2.02□□□□□ -2.09
LHX3Q9UBR4 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC2.02□□□□□ -2.09
LHX3Q9UBR4 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 113.4 ms