Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC3.27□□□□□ -1.89
DKK3Q9UBP4 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC3.27□□□□□ -1.89
DKK3Q9UBP4 SSXP5-201ENST00000443473 287 ntBASIC3.27□□□□□ -1.89
DKK3Q9UBP4 Z96811.1-201ENST00000445880 108 ntBASIC3.27□□□□□ -1.89
DKK3Q9UBP4 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC3.27□□□□□ -1.89
DKK3Q9UBP4 GSTA11P-201ENST00000452866 669 ntBASIC3.27□□□□□ -1.89
DKK3Q9UBP4 MTATP6P7-201ENST00000453315 681 ntBASIC3.27□□□□□ -1.89
DKK3Q9UBP4 RAC1P5-201ENST00000512182 576 ntBASIC3.27□□□□□ -1.89
DKK3Q9UBP4 RNU6-475P-201ENST00000516073 104 ntBASIC3.27□□□□□ -1.89
DKK3Q9UBP4 CASP1P1-201ENST00000526345 212 ntBASIC3.27□□□□□ -1.89
DKK3Q9UBP4 AL355598.1-201ENST00000604169 202 ntBASIC3.27□□□□□ -1.89
DKK3Q9UBP4 AL161629.2-201ENST00000615347 275 ntBASIC3.27□□□□□ -1.89
DKK3Q9UBP4 U2.21-201ENST00000637295 81 ntBASIC3.27□□□□□ -1.89
DKK3Q9UBP4 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC3.27□□□□□ -1.89
DKK3Q9UBP4 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC3.27□□□□□ -1.89
DKK3Q9UBP4 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
DKK3Q9UBP4 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
DKK3Q9UBP4 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC3.26□□□□□ -1.89
DKK3Q9UBP4 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
DKK3Q9UBP4 FTLP6-201ENST00000355274 422 ntBASIC3.26□□□□□ -1.89
DKK3Q9UBP4 RNA5SP139-201ENST00000364340 117 ntBASIC3.26□□□□□ -1.89
DKK3Q9UBP4 RNU6-827P-201ENST00000365553 106 ntBASIC3.26□□□□□ -1.89
DKK3Q9UBP4 SNORD21-201ENST00000383953 95 ntBASIC3.26□□□□□ -1.89
DKK3Q9UBP4 Y_RNA.577-201ENST00000384794 101 ntBASIC3.26□□□□□ -1.89
DKK3Q9UBP4 MIR325-201ENST00000385260 98 ntBASIC3.26□□□□□ -1.89
DKK3Q9UBP4 AL356057.3-201ENST00000402607 340 ntBASIC3.26□□□□□ -1.89
DKK3Q9UBP4 MIR548F4-201ENST00000408515 105 ntBASIC3.26□□□□□ -1.89
DKK3Q9UBP4 RN7SKP220-201ENST00000410611 288 ntBASIC3.26□□□□□ -1.89
DKK3Q9UBP4 RNA5SP31-201ENST00000411144 127 ntBASIC3.26□□□□□ -1.89
DKK3Q9UBP4 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC3.26□□□□□ -1.89
DKK3Q9UBP4 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC3.26□□□□□ -1.89
DKK3Q9UBP4 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC3.26□□□□□ -1.89
DKK3Q9UBP4 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC3.26□□□□□ -1.89
DKK3Q9UBP4 AL512844.2-201ENST00000433990 593 ntBASIC3.26□□□□□ -1.89
DKK3Q9UBP4 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC3.26□□□□□ -1.89
DKK3Q9UBP4 UBBP3-201ENST00000445497 241 ntBASIC3.26□□□□□ -1.89
DKK3Q9UBP4 BTF3P15-201ENST00000455606 336 ntBASIC3.26□□□□□ -1.89
DKK3Q9UBP4 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC3.26□□□□□ -1.89
DKK3Q9UBP4 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC3.26□□□□□ -1.89
DKK3Q9UBP4 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC3.26□□□□□ -1.89
DKK3Q9UBP4 AC022447.4-201ENST00000504053 364 ntBASIC3.26□□□□□ -1.89
DKK3Q9UBP4 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC3.26□□□□□ -1.89
DKK3Q9UBP4 RNU6-120P-201ENST00000516077 103 ntBASIC3.26□□□□□ -1.89
DKK3Q9UBP4 RNU6-764P-201ENST00000516396 105 ntBASIC3.26□□□□□ -1.89
DKK3Q9UBP4 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC3.26□□□□□ -1.89
DKK3Q9UBP4 MIR4273-201ENST00000582824 84 ntBASIC3.26□□□□□ -1.89
DKK3Q9UBP4 AC009314.1-201ENST00000603871 304 ntBASIC3.26□□□□□ -1.89
DKK3Q9UBP4 AC004852.3-201ENST00000614131 326 ntBASIC3.26□□□□□ -1.89
DKK3Q9UBP4 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC3.26□□□□□ -1.89
DKK3Q9UBP4 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
DKK3Q9UBP4 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
DKK3Q9UBP4 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
DKK3Q9UBP4 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC3.26□□□□□ -1.89
DKK3Q9UBP4 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC3.26□□□□□ -1.89
DKK3Q9UBP4 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
DKK3Q9UBP4 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC3.25□□□□□ -1.89
DKK3Q9UBP4 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC3.25□□□□□ -1.89
DKK3Q9UBP4 RNU6-1317P-201ENST00000364582 104 ntBASIC3.25□□□□□ -1.89
DKK3Q9UBP4 SNORA51.4-201ENST00000364993 124 ntBASIC3.25□□□□□ -1.89
DKK3Q9UBP4 BMS1P22-201ENST00000414726 313 ntBASIC3.25□□□□□ -1.89
DKK3Q9UBP4 EIF4EP2-201ENST00000422816 654 ntBASIC3.25□□□□□ -1.89
DKK3Q9UBP4 CEP57L1P1-201ENST00000430943 1201 ntBASIC3.25□□□□□ -1.89
DKK3Q9UBP4 AL031274.1-201ENST00000450334 232 ntBASIC3.25□□□□□ -1.89
DKK3Q9UBP4 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
DKK3Q9UBP4 RPL12P25-201ENST00000455592 494 ntBASIC3.25□□□□□ -1.89
DKK3Q9UBP4 U8.21-201ENST00000459536 136 ntBASIC3.25□□□□□ -1.89
DKK3Q9UBP4 AC133134.1-201ENST00000466800 359 ntBASIC3.25□□□□□ -1.89
DKK3Q9UBP4 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC3.25□□□□□ -1.89
DKK3Q9UBP4 AC128713.1-201ENST00000471495 306 ntBASIC3.25□□□□□ -1.89
DKK3Q9UBP4 RN7SL504P-201ENST00000494496 287 ntBASIC3.25□□□□□ -1.89
DKK3Q9UBP4 AC114801.2-201ENST00000503825 781 ntBASIC3.25□□□□□ -1.89
DKK3Q9UBP4 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC3.25□□□□□ -1.89
DKK3Q9UBP4 RNU4ATAC17P-201ENST00000517272 120 ntBASIC3.25□□□□□ -1.89
DKK3Q9UBP4 AC245166.1-201ENST00000521012 253 ntBASIC3.25□□□□□ -1.89
DKK3Q9UBP4 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC3.25□□□□□ -1.89
DKK3Q9UBP4 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC3.25□□□□□ -1.89
DKK3Q9UBP4 MIR2682-201ENST00000580305 110 ntBASIC3.25□□□□□ -1.89
DKK3Q9UBP4 AC092447.9-201ENST00000603395 144 ntBASIC3.25□□□□□ -1.89
DKK3Q9UBP4 AC005046.1-201ENST00000608515 625 ntBASIC3.25□□□□□ -1.89
DKK3Q9UBP4 MIR8076-201ENST00000611401 83 ntBASIC3.25□□□□□ -1.89
DKK3Q9UBP4 AL162373.1-201ENST00000620433 407 ntBASIC3.25□□□□□ -1.89
DKK3Q9UBP4 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC3.25□□□□□ -1.89
DKK3Q9UBP4 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC3.25□□□□□ -1.89
DKK3Q9UBP4 AC006386.2-201ENST00000624491 75 ntBASIC3.25□□□□□ -1.89
DKK3Q9UBP4 AC012005.1-201ENST00000624575 75 ntBASIC3.25□□□□□ -1.89
DKK3Q9UBP4 MPP6-209ENST00000625307 126 ntTSL 5 BASIC3.25□□□□□ -1.89
DKK3Q9UBP4 SCARNA4-202ENST00000625402 129 ntBASIC3.25□□□□□ -1.89
DKK3Q9UBP4 U4.7-201ENST00000638126 106 ntBASIC3.25□□□□□ -1.89
DKK3Q9UBP4 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC3.25□□□□□ -1.89
DKK3Q9UBP4 AC005592.1-201ENST00000566527 1640 ntBASIC3.25□□□□□ -1.89
DKK3Q9UBP4 AC091564.4-201ENST00000533934 2194 ntBASIC3.25□□□□□ -1.89
DKK3Q9UBP4 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC3.24□□□□□ -1.89
DKK3Q9UBP4 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC3.24□□□□□ -1.89
DKK3Q9UBP4 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC3.24□□□□□ -1.89
DKK3Q9UBP4 RNU6-778P-201ENST00000363269 103 ntBASIC3.24□□□□□ -1.89
DKK3Q9UBP4 RNU6-1309P-201ENST00000363305 108 ntBASIC3.24□□□□□ -1.89
DKK3Q9UBP4 RNU6-72P-201ENST00000384285 79 ntBASIC3.24□□□□□ -1.89
DKK3Q9UBP4 RPS29P13-201ENST00000402041 169 ntBASIC3.24□□□□□ -1.89
DKK3Q9UBP4 RNU2-23P-201ENST00000410545 195 ntBASIC3.24□□□□□ -1.89
DKK3Q9UBP4 HNRNPDLP1-201ENST00000412834 550 ntBASIC3.24□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 147.8 ms