Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC2.16□□□□□ -2.06
VPS54Q9P1Q0 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC2.15□□□□□ -2.07
VPS54Q9P1Q0 RNU6-434P-201ENST00000384376 107 ntBASIC2.15□□□□□ -2.07
VPS54Q9P1Q0 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC2.15□□□□□ -2.07
VPS54Q9P1Q0 RNU6-1158P-201ENST00000391167 107 ntBASIC2.15□□□□□ -2.07
VPS54Q9P1Q0 MIR1261-201ENST00000408659 82 ntBASIC2.15□□□□□ -2.07
VPS54Q9P1Q0 BTF3L4P1-201ENST00000413813 468 ntBASIC2.15□□□□□ -2.07
VPS54Q9P1Q0 AL445685.2-201ENST00000422551 342 ntBASIC2.15□□□□□ -2.07
VPS54Q9P1Q0 SNRPFP3-201ENST00000457792 225 ntBASIC2.15□□□□□ -2.07
VPS54Q9P1Q0 RNU7-63P-201ENST00000459054 62 ntBASIC2.15□□□□□ -2.07
VPS54Q9P1Q0 GMFBP1-201ENST00000467831 427 ntBASIC2.15□□□□□ -2.07
VPS54Q9P1Q0 RPL30P12-201ENST00000474666 353 ntBASIC2.15□□□□□ -2.07
VPS54Q9P1Q0 HMGB1P29-201ENST00000505659 499 ntBASIC2.15□□□□□ -2.07
VPS54Q9P1Q0 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC2.15□□□□□ -2.07
VPS54Q9P1Q0 RNU2-53P-201ENST00000516257 147 ntBASIC2.15□□□□□ -2.07
VPS54Q9P1Q0 RNU7-193P-201ENST00000516723 65 ntBASIC2.15□□□□□ -2.07
VPS54Q9P1Q0 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC2.15□□□□□ -2.07
VPS54Q9P1Q0 IL7-206ENST00000520269 456 ntTSL 3 BASIC2.15□□□□□ -2.07
VPS54Q9P1Q0 AC118273.2-201ENST00000532092 465 ntBASIC2.15□□□□□ -2.07
VPS54Q9P1Q0 AC090897.2-201ENST00000581715 130 ntBASIC2.15□□□□□ -2.07
VPS54Q9P1Q0 AC245008.1-201ENST00000608123 476 ntBASIC2.15□□□□□ -2.07
VPS54Q9P1Q0 AC005609.4-201ENST00000625071 447 ntBASIC2.15□□□□□ -2.07
VPS54Q9P1Q0 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC2.15□□□□□ -2.07
VPS54Q9P1Q0 MTND4P14-201ENST00000435799 1354 ntBASIC2.14□□□□□ -2.07
VPS54Q9P1Q0 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC2.14□□□□□ -2.07
VPS54Q9P1Q0 Y_RNA.40-201ENST00000362645 93 ntBASIC2.14□□□□□ -2.07
VPS54Q9P1Q0 RNU6-487P-201ENST00000365430 104 ntBASIC2.14□□□□□ -2.07
VPS54Q9P1Q0 RNU6-996P-201ENST00000365438 107 ntBASIC2.14□□□□□ -2.07
VPS54Q9P1Q0 Y_RNA.409-201ENST00000383990 98 ntBASIC2.14□□□□□ -2.07
VPS54Q9P1Q0 RNU4-52P-201ENST00000384209 138 ntBASIC2.14□□□□□ -2.07
VPS54Q9P1Q0 RNA5SP390-201ENST00000410191 113 ntBASIC2.14□□□□□ -2.07
VPS54Q9P1Q0 RNU4-55P-201ENST00000410731 137 ntBASIC2.14□□□□□ -2.07
VPS54Q9P1Q0 OR9R1P-201ENST00000412200 877 ntBASIC2.14□□□□□ -2.07
VPS54Q9P1Q0 AC016691.1-201ENST00000441321 413 ntBASIC2.14□□□□□ -2.07
VPS54Q9P1Q0 AC009238.1-201ENST00000442165 424 ntBASIC2.14□□□□□ -2.07
VPS54Q9P1Q0 AC009237.6-201ENST00000446969 424 ntBASIC2.14□□□□□ -2.07
VPS54Q9P1Q0 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC2.14□□□□□ -2.07
VPS54Q9P1Q0 RPS29P11-201ENST00000496507 171 ntBASIC2.14□□□□□ -2.07
VPS54Q9P1Q0 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC2.14□□□□□ -2.07
VPS54Q9P1Q0 RNU6-405P-201ENST00000516637 110 ntBASIC2.14□□□□□ -2.07
VPS54Q9P1Q0 MIR514B-201ENST00000516774 80 ntBASIC2.14□□□□□ -2.07
VPS54Q9P1Q0 HIF1AP1-201ENST00000553642 175 ntBASIC2.14□□□□□ -2.07
VPS54Q9P1Q0 AC138625.1-201ENST00000567556 483 ntTSL 3 BASIC2.14□□□□□ -2.07
VPS54Q9P1Q0 AGGF1P4-201ENST00000568249 801 ntBASIC2.14□□□□□ -2.07
VPS54Q9P1Q0 MIR3935-201ENST00000583472 104 ntBASIC2.14□□□□□ -2.07
VPS54Q9P1Q0 AC087683.1-201ENST00000591187 441 ntBASIC2.14□□□□□ -2.07
VPS54Q9P1Q0 AC091805.2-201ENST00000603848 235 ntBASIC2.14□□□□□ -2.07
VPS54Q9P1Q0 AC123912.5-201ENST00000605470 343 ntBASIC2.14□□□□□ -2.07
VPS54Q9P1Q0 AC002044.1-201ENST00000606707 158 ntBASIC2.14□□□□□ -2.07
VPS54Q9P1Q0 U4.7-201ENST00000638126 106 ntBASIC2.14□□□□□ -2.07
VPS54Q9P1Q0 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC2.14□□□□□ -2.07
VPS54Q9P1Q0 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC2.13□□□□□ -2.07
VPS54Q9P1Q0 RNU6-527P-201ENST00000363425 104 ntBASIC2.13□□□□□ -2.07
VPS54Q9P1Q0 RNU6-517P-201ENST00000384362 110 ntBASIC2.13□□□□□ -2.07
VPS54Q9P1Q0 MIR17-201ENST00000385012 84 ntBASIC2.13□□□□□ -2.07
VPS54Q9P1Q0 MIR95-201ENST00000385072 81 ntBASIC2.13□□□□□ -2.07
VPS54Q9P1Q0 RNU2-66P-201ENST00000410650 161 ntBASIC2.13□□□□□ -2.07
VPS54Q9P1Q0 RNA5SP270-201ENST00000411361 118 ntBASIC2.13□□□□□ -2.07
VPS54Q9P1Q0 HMGN2P38-201ENST00000423806 265 ntBASIC2.13□□□□□ -2.07
VPS54Q9P1Q0 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC2.13□□□□□ -2.07
VPS54Q9P1Q0 AL606489.2-201ENST00000433886 234 ntBASIC2.13□□□□□ -2.07
VPS54Q9P1Q0 AC073415.1-201ENST00000449240 153 ntBASIC2.13□□□□□ -2.07
VPS54Q9P1Q0 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC2.13□□□□□ -2.07
VPS54Q9P1Q0 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC2.13□□□□□ -2.07
VPS54Q9P1Q0 MTCO2P18-201ENST00000457151 658 ntBASIC2.13□□□□□ -2.07
VPS54Q9P1Q0 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC2.13□□□□□ -2.07
VPS54Q9P1Q0 AL163973.1-201ENST00000484753 577 ntBASIC2.13□□□□□ -2.07
VPS54Q9P1Q0 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC2.13□□□□□ -2.07
VPS54Q9P1Q0 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC2.13□□□□□ -2.07
VPS54Q9P1Q0 RNA5SP364-201ENST00000516938 78 ntBASIC2.13□□□□□ -2.07
VPS54Q9P1Q0 AC109329.1-201ENST00000518744 317 ntBASIC2.13□□□□□ -2.07
VPS54Q9P1Q0 AL358937.1-201ENST00000524512 336 ntTSL 2 BASIC2.13□□□□□ -2.07
VPS54Q9P1Q0 AL137161.1-201ENST00000532231 390 ntBASIC2.13□□□□□ -2.07
VPS54Q9P1Q0 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC2.13□□□□□ -2.07
VPS54Q9P1Q0 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC2.13□□□□□ -2.07
VPS54Q9P1Q0 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC2.13□□□□□ -2.07
VPS54Q9P1Q0 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC2.13□□□□□ -2.07
VPS54Q9P1Q0 AC025165.5-201ENST00000602802 578 ntBASIC2.13□□□□□ -2.07
VPS54Q9P1Q0 AC012507.3-201ENST00000603556 477 ntBASIC2.13□□□□□ -2.07
VPS54Q9P1Q0 C8orf59-207ENST00000611854 563 ntAPPRIS P1 TSL 2 BASIC2.13□□□□□ -2.07
VPS54Q9P1Q0 DUXAP9-208ENST00000622815 614 ntBASIC2.13□□□□□ -2.07
VPS54Q9P1Q0 AP003400.5-201ENST00000624827 617 ntBASIC2.13□□□□□ -2.07
VPS54Q9P1Q0 MTND5P26-201ENST00000426018 1752 ntBASIC2.13□□□□□ -2.07
VPS54Q9P1Q0 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC2.12□□□□□ -2.07
VPS54Q9P1Q0 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC2.12□□□□□ -2.07
VPS54Q9P1Q0 AL359851.1-201ENST00000569460 4997 ntBASIC2.12□□□□□ -2.07
VPS54Q9P1Q0 AL354685.2-201ENST00000448218 1447 ntBASIC2.12□□□□□ -2.07
VPS54Q9P1Q0 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC2.12□□□□□ -2.07
VPS54Q9P1Q0 RNU6-259P-201ENST00000383999 107 ntBASIC2.12□□□□□ -2.07
VPS54Q9P1Q0 RNU6-1042P-201ENST00000384204 107 ntBASIC2.12□□□□□ -2.07
VPS54Q9P1Q0 MIR9-3-201ENST00000385084 90 ntBASIC2.12□□□□□ -2.07
VPS54Q9P1Q0 AL591034.2-201ENST00000402839 359 ntBASIC2.12□□□□□ -2.07
VPS54Q9P1Q0 AC019129.1-201ENST00000403786 261 ntBASIC2.12□□□□□ -2.07
VPS54Q9P1Q0 AL663109.1-201ENST00000411498 844 ntBASIC2.12□□□□□ -2.07
VPS54Q9P1Q0 SRIP2-201ENST00000428470 166 ntBASIC2.12□□□□□ -2.07
VPS54Q9P1Q0 AL591043.1-201ENST00000432461 424 ntBASIC2.12□□□□□ -2.07
VPS54Q9P1Q0 HMGN2P3-201ENST00000433603 273 ntBASIC2.12□□□□□ -2.07
VPS54Q9P1Q0 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC2.12□□□□□ -2.07
VPS54Q9P1Q0 HMGN2P5-201ENST00000436882 273 ntBASIC2.12□□□□□ -2.07
VPS54Q9P1Q0 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC2.12□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 103 ms