Protein–RNA interactions for Protein: Q9NQT5

EXOSC3, Exosome complex component RRP40, humanhuman

Known RBP Predictions only

Length 275 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC3Q9NQT5 RNU6-506P-201ENST00000516553 94 ntBASIC1.96□□□□□ -2.1
EXOSC3Q9NQT5 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC1.96□□□□□ -2.1
EXOSC3Q9NQT5 AC027807.1-201ENST00000559921 996 ntBASIC1.96□□□□□ -2.1
EXOSC3Q9NQT5 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC1.96□□□□□ -2.1
EXOSC3Q9NQT5 VN1R80P-201ENST00000597126 338 ntBASIC1.96□□□□□ -2.1
EXOSC3Q9NQT5 AC025165.5-201ENST00000602802 578 ntBASIC1.96□□□□□ -2.1
EXOSC3Q9NQT5 AC107304.1-201ENST00000604229 296 ntBASIC1.96□□□□□ -2.1
EXOSC3Q9NQT5 RNU6-85P-201ENST00000605989 107 ntBASIC1.96□□□□□ -2.1
EXOSC3Q9NQT5 MIR6840-201ENST00000611937 71 ntBASIC1.96□□□□□ -2.1
EXOSC3Q9NQT5 AC087241.4-201ENST00000612441 480 ntBASIC1.96□□□□□ -2.1
EXOSC3Q9NQT5 MIR5739-201ENST00000619803 80 ntBASIC1.96□□□□□ -2.1
EXOSC3Q9NQT5 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC1.96□□□□□ -2.1
EXOSC3Q9NQT5 IGHVIII-44-202ENST00000636235 289 ntBASIC1.96□□□□□ -2.1
EXOSC3Q9NQT5 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC1.96□□□□□ -2.1
EXOSC3Q9NQT5 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC1.96□□□□□ -2.1
EXOSC3Q9NQT5 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC1.95□□□□□ -2.1
EXOSC3Q9NQT5 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.95□□□□□ -2.1
EXOSC3Q9NQT5 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC1.95□□□□□ -2.1
EXOSC3Q9NQT5 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC1.95□□□□□ -2.1
EXOSC3Q9NQT5 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC1.95□□□□□ -2.1
EXOSC3Q9NQT5 Y_RNA.111-201ENST00000363248 100 ntBASIC1.95□□□□□ -2.1
EXOSC3Q9NQT5 RNU6-336P-201ENST00000364891 107 ntBASIC1.95□□□□□ -2.1
EXOSC3Q9NQT5 Y_RNA.378-201ENST00000365652 113 ntBASIC1.95□□□□□ -2.1
EXOSC3Q9NQT5 RNU6-38P-201ENST00000384085 107 ntBASIC1.95□□□□□ -2.1
EXOSC3Q9NQT5 RNU6-483P-201ENST00000384088 108 ntBASIC1.95□□□□□ -2.1
EXOSC3Q9NQT5 SNORD116-4-201ENST00000384733 96 ntBASIC1.95□□□□□ -2.1
EXOSC3Q9NQT5 RNA5SP390-201ENST00000410191 113 ntBASIC1.95□□□□□ -2.1
EXOSC3Q9NQT5 RNU2-23P-201ENST00000410545 195 ntBASIC1.95□□□□□ -2.1
EXOSC3Q9NQT5 RNU2-63P-201ENST00000410792 194 ntBASIC1.95□□□□□ -2.1
EXOSC3Q9NQT5 RNU6-1068P-201ENST00000410958 103 ntBASIC1.95□□□□□ -2.1
EXOSC3Q9NQT5 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC1.95□□□□□ -2.1
EXOSC3Q9NQT5 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC1.95□□□□□ -2.1
EXOSC3Q9NQT5 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC1.95□□□□□ -2.1
EXOSC3Q9NQT5 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC1.95□□□□□ -2.1
EXOSC3Q9NQT5 RPL39P29-201ENST00000447779 157 ntBASIC1.95□□□□□ -2.1
EXOSC3Q9NQT5 RNU6-333P-201ENST00000459117 107 ntBASIC1.95□□□□□ -2.1
EXOSC3Q9NQT5 SNRPGP7-201ENST00000469016 106 ntBASIC1.95□□□□□ -2.1
EXOSC3Q9NQT5 AC117503.1-201ENST00000472241 394 ntBASIC1.95□□□□□ -2.1
EXOSC3Q9NQT5 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC1.95□□□□□ -2.1
EXOSC3Q9NQT5 AL121594.1-201ENST00000475906 575 ntBASIC1.95□□□□□ -2.1
EXOSC3Q9NQT5 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC1.95□□□□□ -2.1
EXOSC3Q9NQT5 NAF1-205ENST00000509434 385 ntTSL 3 BASIC1.95□□□□□ -2.1
EXOSC3Q9NQT5 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC1.95□□□□□ -2.1
EXOSC3Q9NQT5 AP005902.1-201ENST00000521358 186 ntBASIC1.95□□□□□ -2.1
EXOSC3Q9NQT5 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC1.95□□□□□ -2.1
EXOSC3Q9NQT5 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC1.95□□□□□ -2.1
EXOSC3Q9NQT5 OR11H5P-201ENST00000554039 926 ntBASIC1.95□□□□□ -2.1
EXOSC3Q9NQT5 AC103996.1-201ENST00000555468 102 ntBASIC1.95□□□□□ -2.1
EXOSC3Q9NQT5 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC1.95□□□□□ -2.1
EXOSC3Q9NQT5 MIR5002-201ENST00000584713 97 ntBASIC1.95□□□□□ -2.1
EXOSC3Q9NQT5 AL355297.2-201ENST00000604792 129 ntBASIC1.95□□□□□ -2.1
EXOSC3Q9NQT5 AC064807.4-201ENST00000607201 407 ntBASIC1.95□□□□□ -2.1
EXOSC3Q9NQT5 AL449363.1-201ENST00000617815 186 ntBASIC1.95□□□□□ -2.1
EXOSC3Q9NQT5 MIR6852-201ENST00000621699 66 ntBASIC1.95□□□□□ -2.1
EXOSC3Q9NQT5 AC090517.3-201ENST00000625170 141 ntBASIC1.95□□□□□ -2.1
EXOSC3Q9NQT5 AC092881.1-201ENST00000638218 2733 ntBASIC1.95□□□□□ -2.1
EXOSC3Q9NQT5 ATP8A2P2-201ENST00000437678 1568 ntBASIC1.94□□□□□ -2.1
EXOSC3Q9NQT5 RNU6-655P-201ENST00000362858 107 ntBASIC1.94□□□□□ -2.1
EXOSC3Q9NQT5 RNA5SP138-201ENST00000365098 114 ntBASIC1.94□□□□□ -2.1
EXOSC3Q9NQT5 RNU6-827P-201ENST00000365553 106 ntBASIC1.94□□□□□ -2.1
EXOSC3Q9NQT5 SNORD73A-201ENST00000386062 65 ntBASIC1.94□□□□□ -2.1
EXOSC3Q9NQT5 AL591034.2-201ENST00000402839 359 ntBASIC1.94□□□□□ -2.1
EXOSC3Q9NQT5 SNORA11.4-201ENST00000408823 129 ntBASIC1.94□□□□□ -2.1
EXOSC3Q9NQT5 RNU6-648P-201ENST00000410190 107 ntBASIC1.94□□□□□ -2.1
EXOSC3Q9NQT5 RNU6-293P-201ENST00000411259 106 ntBASIC1.94□□□□□ -2.1
EXOSC3Q9NQT5 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC1.94□□□□□ -2.1
EXOSC3Q9NQT5 AIMP1P2-201ENST00000425294 312 ntBASIC1.94□□□□□ -2.1
EXOSC3Q9NQT5 C8orf59P1-201ENST00000429930 303 ntBASIC1.94□□□□□ -2.1
EXOSC3Q9NQT5 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC1.94□□□□□ -2.1
EXOSC3Q9NQT5 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC1.94□□□□□ -2.1
EXOSC3Q9NQT5 MTND3P16-201ENST00000452205 344 ntBASIC1.94□□□□□ -2.1
EXOSC3Q9NQT5 RPL21P99-201ENST00000480369 423 ntBASIC1.94□□□□□ -2.1
EXOSC3Q9NQT5 RNU6-1281P-201ENST00000516223 105 ntBASIC1.94□□□□□ -2.1
EXOSC3Q9NQT5 AC069113.1-201ENST00000517763 267 ntBASIC1.94□□□□□ -2.1
EXOSC3Q9NQT5 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC1.94□□□□□ -2.1
EXOSC3Q9NQT5 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC1.94□□□□□ -2.1
EXOSC3Q9NQT5 CENPUP1-201ENST00000526649 1202 ntBASIC1.94□□□□□ -2.1
EXOSC3Q9NQT5 HMGB1P33-201ENST00000563485 527 ntBASIC1.94□□□□□ -2.1
EXOSC3Q9NQT5 AL138976.2-201ENST00000563989 694 ntBASIC1.94□□□□□ -2.1
EXOSC3Q9NQT5 MIR1273D-201ENST00000577266 86 ntBASIC1.94□□□□□ -2.1
EXOSC3Q9NQT5 AC092747.3-201ENST00000603769 301 ntBASIC1.94□□□□□ -2.1
EXOSC3Q9NQT5 SNORD14A-201ENST00000606526 91 ntBASIC1.94□□□□□ -2.1
EXOSC3Q9NQT5 YWHAEP7-203ENST00000622054 312 ntBASIC1.94□□□□□ -2.1
EXOSC3Q9NQT5 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC1.94□□□□□ -2.1
EXOSC3Q9NQT5 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC1.94□□□□□ -2.1
EXOSC3Q9NQT5 MTND4P1-201ENST00000457501 1466 ntBASIC1.94□□□□□ -2.1
EXOSC3Q9NQT5 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC1.93□□□□□ -2.1
EXOSC3Q9NQT5 Y_RNA.3-201ENST00000362331 103 ntBASIC1.93□□□□□ -2.1
EXOSC3Q9NQT5 RNU4-52P-201ENST00000384209 138 ntBASIC1.93□□□□□ -2.1
EXOSC3Q9NQT5 RNU6-692P-201ENST00000384496 107 ntBASIC1.93□□□□□ -2.1
EXOSC3Q9NQT5 AL590002.1-201ENST00000406554 418 ntBASIC1.93□□□□□ -2.1
EXOSC3Q9NQT5 POLHP1-201ENST00000411806 470 ntBASIC1.93□□□□□ -2.1
EXOSC3Q9NQT5 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC1.93□□□□□ -2.1
EXOSC3Q9NQT5 AL117339.3-201ENST00000418733 162 ntBASIC1.93□□□□□ -2.1
EXOSC3Q9NQT5 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC1.93□□□□□ -2.1
EXOSC3Q9NQT5 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC1.93□□□□□ -2.1
EXOSC3Q9NQT5 SRIP2-201ENST00000428470 166 ntBASIC1.93□□□□□ -2.1
EXOSC3Q9NQT5 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC1.93□□□□□ -2.1
EXOSC3Q9NQT5 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC1.93□□□□□ -2.1
EXOSC3Q9NQT5 AL161788.1-201ENST00000441805 169 ntBASIC1.93□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 126.6 ms