Protein–RNA interactions for Protein: Q99250

SCN2A, Sodium channel protein type 2 subunit alpha, humanhuman

Predictions only

Length 2,005 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN2AQ99250 RNU6-1158P-201ENST00000391167 107 ntBASIC1.78□□□□□ -2.13
SCN2AQ99250 RNU6-332P-201ENST00000391193 108 ntBASIC1.78□□□□□ -2.13
SCN2AQ99250 RAP1BP3-201ENST00000407180 549 ntBASIC1.78□□□□□ -2.13
SCN2AQ99250 RNU2-20P-201ENST00000410425 191 ntBASIC1.78□□□□□ -2.13
SCN2AQ99250 RNU2-16P-201ENST00000410712 136 ntBASIC1.78□□□□□ -2.13
SCN2AQ99250 AC093157.2-201ENST00000414686 671 ntTSL 5 BASIC1.78□□□□□ -2.13
SCN2AQ99250 EIF1AXP1-201ENST00000419267 435 ntBASIC1.78□□□□□ -2.13
SCN2AQ99250 PGBD4P6-201ENST00000421501 610 ntBASIC1.78□□□□□ -2.13
SCN2AQ99250 AL096799.1-201ENST00000425900 381 ntTSL 2 BASIC1.78□□□□□ -2.13
SCN2AQ99250 AC064852.1-201ENST00000427571 851 ntTSL 3 BASIC1.78□□□□□ -2.13
SCN2AQ99250 AL358934.1-201ENST00000432346 324 ntBASIC1.78□□□□□ -2.13
SCN2AQ99250 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC1.78□□□□□ -2.13
SCN2AQ99250 AL356010.1-201ENST00000456364 102 ntBASIC1.78□□□□□ -2.13
SCN2AQ99250 AC011005.2-201ENST00000487324 359 ntBASIC1.78□□□□□ -2.13
SCN2AQ99250 AC009646.1-201ENST00000510455 318 ntBASIC1.78□□□□□ -2.13
SCN2AQ99250 RNU5F-2P-201ENST00000516066 82 ntBASIC1.78□□□□□ -2.13
SCN2AQ99250 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC1.78□□□□□ -2.13
SCN2AQ99250 COPS8P3-201ENST00000526024 482 ntBASIC1.78□□□□□ -2.13
SCN2AQ99250 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC1.78□□□□□ -2.13
SCN2AQ99250 AC006199.1-201ENST00000548728 219 ntBASIC1.78□□□□□ -2.13
SCN2AQ99250 AC138625.1-201ENST00000567556 483 ntTSL 3 BASIC1.78□□□□□ -2.13
SCN2AQ99250 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC1.78□□□□□ -2.13
SCN2AQ99250 MIR3117-201ENST00000584034 78 ntBASIC1.78□□□□□ -2.13
SCN2AQ99250 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC1.78□□□□□ -2.13
SCN2AQ99250 AC138627.2-201ENST00000624202 601 ntBASIC1.78□□□□□ -2.13
SCN2AQ99250 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC1.78□□□□□ -2.13
SCN2AQ99250 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC1.77□□□□□ -2.13
SCN2AQ99250 RNU6-1215P-201ENST00000384441 102 ntBASIC1.77□□□□□ -2.13
SCN2AQ99250 RNU6-1179P-201ENST00000384667 107 ntBASIC1.77□□□□□ -2.13
SCN2AQ99250 SNORD37.1-201ENST00000390968 65 ntBASIC1.77□□□□□ -2.13
SCN2AQ99250 TRAPPC2P3-201ENST00000443200 321 ntBASIC1.77□□□□□ -2.13
SCN2AQ99250 HMGN2P10-201ENST00000448085 265 ntBASIC1.77□□□□□ -2.13
SCN2AQ99250 SNORD13-201ENST00000459299 104 ntBASIC1.77□□□□□ -2.13
SCN2AQ99250 AC023141.11-201ENST00000508864 202 ntBASIC1.77□□□□□ -2.13
SCN2AQ99250 MTCYBP40-201ENST00000509390 1135 ntBASIC1.77□□□□□ -2.13
SCN2AQ99250 AP005597.4-201ENST00000526762 229 ntBASIC1.77□□□□□ -2.13
SCN2AQ99250 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC1.77□□□□□ -2.13
SCN2AQ99250 MIR4419B-201ENST00000577260 68 ntBASIC1.77□□□□□ -2.13
SCN2AQ99250 MIR4775-201ENST00000581168 75 ntBASIC1.77□□□□□ -2.13
SCN2AQ99250 MIR548AC-201ENST00000585049 88 ntBASIC1.77□□□□□ -2.13
SCN2AQ99250 AC005261.5-201ENST00000596280 355 ntBASIC1.77□□□□□ -2.13
SCN2AQ99250 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC1.77□□□□□ -2.13
SCN2AQ99250 AC024581.2-201ENST00000619986 252 ntBASIC1.77□□□□□ -2.13
SCN2AQ99250 AL031601.2-202ENST00000622650 282 ntBASIC1.77□□□□□ -2.13
SCN2AQ99250 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.77□□□□□ -2.13
SCN2AQ99250 SNORA67.1-201ENST00000364749 141 ntBASIC1.76□□□□□ -2.13
SCN2AQ99250 MIR181A1-201ENST00000385026 110 ntBASIC1.76□□□□□ -2.13
SCN2AQ99250 SNORD23.1-201ENST00000408212 104 ntBASIC1.76□□□□□ -2.13
SCN2AQ99250 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC1.76□□□□□ -2.13
SCN2AQ99250 AC092809.3-201ENST00000415453 231 ntBASIC1.76□□□□□ -2.13
SCN2AQ99250 ACTR3BP6-201ENST00000422332 1241 ntBASIC1.76□□□□□ -2.13
SCN2AQ99250 Z82205.1-201ENST00000428456 297 ntBASIC1.76□□□□□ -2.13
SCN2AQ99250 SEPT14P3-201ENST00000439401 183 ntBASIC1.76□□□□□ -2.13
SCN2AQ99250 AL732372.2-207ENST00000445840 183 ntBASIC1.76□□□□□ -2.13
SCN2AQ99250 MTND3P16-201ENST00000452205 344 ntBASIC1.76□□□□□ -2.13
SCN2AQ99250 SEPT14P2-201ENST00000453405 183 ntBASIC1.76□□□□□ -2.13
SCN2AQ99250 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC1.76□□□□□ -2.13
SCN2AQ99250 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC1.76□□□□□ -2.13
SCN2AQ99250 AL583843.1-201ENST00000456070 346 ntBASIC1.76□□□□□ -2.13
SCN2AQ99250 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC1.76□□□□□ -2.13
SCN2AQ99250 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC1.76□□□□□ -2.13
SCN2AQ99250 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC1.76□□□□□ -2.13
SCN2AQ99250 SEPT14P4-201ENST00000513445 186 ntBASIC1.76□□□□□ -2.13
SCN2AQ99250 RNU2-46P-201ENST00000517038 113 ntBASIC1.76□□□□□ -2.13
SCN2AQ99250 FO082796.1-201ENST00000523795 183 ntBASIC1.76□□□□□ -2.13
SCN2AQ99250 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC1.76□□□□□ -2.13
SCN2AQ99250 AC022880.1-201ENST00000534017 973 ntBASIC1.76□□□□□ -2.13
SCN2AQ99250 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC1.76□□□□□ -2.13
SCN2AQ99250 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC1.76□□□□□ -2.13
SCN2AQ99250 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC1.76□□□□□ -2.13
SCN2AQ99250 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC1.76□□□□□ -2.13
SCN2AQ99250 AC009127.3-201ENST00000570531 403 ntBASIC1.76□□□□□ -2.13
SCN2AQ99250 AP005120.1-201ENST00000579321 352 ntTSL 3 BASIC1.76□□□□□ -2.13
SCN2AQ99250 AL158032.1-201ENST00000605401 106 ntBASIC1.76□□□□□ -2.13
SCN2AQ99250 RNU6-89P-201ENST00000606519 100 ntBASIC1.76□□□□□ -2.13
SCN2AQ99250 AC004492.1-201ENST00000607036 742 ntBASIC1.76□□□□□ -2.13
SCN2AQ99250 AP001330.5-201ENST00000607176 411 ntBASIC1.76□□□□□ -2.13
SCN2AQ99250 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC1.76□□□□□ -2.13
SCN2AQ99250 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC1.76□□□□□ -2.13
SCN2AQ99250 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC1.76□□□□□ -2.13
SCN2AQ99250 SNORA6-201ENST00000384033 151 ntBASIC1.76□□□□□ -2.13
SCN2AQ99250 RNU1-57P-201ENST00000384491 166 ntBASIC1.76□□□□□ -2.13
SCN2AQ99250 MIR524-201ENST00000385242 87 ntBASIC1.76□□□□□ -2.13
SCN2AQ99250 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC1.76□□□□□ -2.13
SCN2AQ99250 AL513475.1-201ENST00000406602 315 ntBASIC1.76□□□□□ -2.13
SCN2AQ99250 HMGB3P2-201ENST00000411913 584 ntBASIC1.76□□□□□ -2.13
SCN2AQ99250 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC1.76□□□□□ -2.13
SCN2AQ99250 DLGAP5P1-201ENST00000430307 464 ntBASIC1.76□□□□□ -2.13
SCN2AQ99250 AL445687.1-201ENST00000439946 251 ntBASIC1.76□□□□□ -2.13
SCN2AQ99250 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC1.76□□□□□ -2.13
SCN2AQ99250 MTND1P1-201ENST00000445453 368 ntBASIC1.76□□□□□ -2.13
SCN2AQ99250 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC1.76□□□□□ -2.13
SCN2AQ99250 AC092001.1-201ENST00000453012 261 ntBASIC1.76□□□□□ -2.13
SCN2AQ99250 AC013470.1-201ENST00000453438 462 ntBASIC1.76□□□□□ -2.13
SCN2AQ99250 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC1.76□□□□□ -2.13
SCN2AQ99250 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC1.76□□□□□ -2.13
SCN2AQ99250 RNU7-66P-201ENST00000459469 62 ntBASIC1.76□□□□□ -2.13
SCN2AQ99250 RPL22P13-201ENST00000493291 347 ntBASIC1.76□□□□□ -2.13
SCN2AQ99250 Y_RNA.655-201ENST00000515919 96 ntBASIC1.76□□□□□ -2.13
SCN2AQ99250 SNORA14.1-201ENST00000516113 141 ntBASIC1.76□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 171.8 ms