Protein–RNA interactions for Protein: Q96PN7

TRERF1, Transcriptional-regulating factor 1, humanhuman

Predictions only

Length 1,200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRERF1Q96PN7 SNORA29-201ENST00000384183 140 ntBASIC4.68□□□□□ -1.66
TRERF1Q96PN7 MIR514A1-201ENST00000385133 98 ntBASIC4.68□□□□□ -1.66
TRERF1Q96PN7 RNU6-159P-201ENST00000391080 106 ntBASIC4.68□□□□□ -1.66
TRERF1Q96PN7 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
TRERF1Q96PN7 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC4.68□□□□□ -1.66
TRERF1Q96PN7 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
TRERF1Q96PN7 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC4.68□□□□□ -1.66
TRERF1Q96PN7 AC127455.1-201ENST00000565496 145 ntBASIC4.68□□□□□ -1.66
TRERF1Q96PN7 DNAJC19P2-201ENST00000593340 302 ntBASIC4.68□□□□□ -1.66
TRERF1Q96PN7 MIR6868-201ENST00000611215 58 ntBASIC4.68□□□□□ -1.66
TRERF1Q96PN7 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
TRERF1Q96PN7 SMCR2_2.1-201ENST00000619783 161 ntBASIC4.68□□□□□ -1.66
TRERF1Q96PN7 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC4.68□□□□□ -1.66
TRERF1Q96PN7 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC4.68□□□□□ -1.66
TRERF1Q96PN7 CUL1P1-201ENST00000509510 2425 ntBASIC4.68□□□□□ -1.66
TRERF1Q96PN7 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC4.68□□□□□ -1.66
TRERF1Q96PN7 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC4.68□□□□□ -1.66
TRERF1Q96PN7 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC4.67□□□□□ -1.66
TRERF1Q96PN7 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC4.67□□□□□ -1.66
TRERF1Q96PN7 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC4.67□□□□□ -1.66
TRERF1Q96PN7 LINC01505-206ENST00000637046 4266 ntTSL 5 BASIC4.67□□□□□ -1.66
TRERF1Q96PN7 RNA5SP267-201ENST00000364893 126 ntBASIC4.67□□□□□ -1.66
TRERF1Q96PN7 Y_RNA.563-201ENST00000384707 108 ntBASIC4.67□□□□□ -1.66
TRERF1Q96PN7 SNORA40.19-201ENST00000390846 128 ntBASIC4.67□□□□□ -1.66
TRERF1Q96PN7 RNU6-381P-201ENST00000391259 108 ntBASIC4.67□□□□□ -1.66
TRERF1Q96PN7 RNA5SP44-201ENST00000410446 133 ntBASIC4.67□□□□□ -1.66
TRERF1Q96PN7 RNU6-1064P-201ENST00000410626 104 ntBASIC4.67□□□□□ -1.66
TRERF1Q96PN7 AC244098.2-201ENST00000422068 99 ntBASIC4.67□□□□□ -1.66
TRERF1Q96PN7 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC4.67□□□□□ -1.66
TRERF1Q96PN7 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC4.67□□□□□ -1.66
TRERF1Q96PN7 Y_RNA.637-201ENST00000459424 114 ntBASIC4.67□□□□□ -1.66
TRERF1Q96PN7 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC4.67□□□□□ -1.66
TRERF1Q96PN7 MLLT10P2-201ENST00000506434 249 ntBASIC4.67□□□□□ -1.66
TRERF1Q96PN7 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
TRERF1Q96PN7 SNORA67.7-201ENST00000516664 135 ntBASIC4.67□□□□□ -1.66
TRERF1Q96PN7 RNU6-572P-201ENST00000516724 80 ntBASIC4.67□□□□□ -1.66
TRERF1Q96PN7 AC100767.1-201ENST00000528178 123 ntBASIC4.67□□□□□ -1.66
TRERF1Q96PN7 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC4.67□□□□□ -1.66
TRERF1Q96PN7 UBE2Q2P8-201ENST00000560644 102 ntBASIC4.67□□□□□ -1.66
TRERF1Q96PN7 HSPE1P5-201ENST00000561489 272 ntBASIC4.67□□□□□ -1.66
TRERF1Q96PN7 AC025627.2-201ENST00000576220 160 ntBASIC4.67□□□□□ -1.66
TRERF1Q96PN7 MIR4431-201ENST00000579990 94 ntBASIC4.67□□□□□ -1.66
TRERF1Q96PN7 DEFB117-201ENST00000602356 141 ntBASIC4.67□□□□□ -1.66
TRERF1Q96PN7 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC4.67□□□□□ -1.66
TRERF1Q96PN7 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC4.67□□□□□ -1.66
TRERF1Q96PN7 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
TRERF1Q96PN7 AL139811.1-201ENST00000424779 2299 ntBASIC4.67□□□□□ -1.66
TRERF1Q96PN7 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC4.67□□□□□ -1.66
TRERF1Q96PN7 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
TRERF1Q96PN7 SRP72P2-201ENST00000344851 1979 ntBASIC4.66□□□□□ -1.66
TRERF1Q96PN7 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC4.66□□□□□ -1.66
TRERF1Q96PN7 MIR1183-201ENST00000408856 89 ntBASIC4.66□□□□□ -1.66
TRERF1Q96PN7 AC138623.1-201ENST00000418060 216 ntBASIC4.66□□□□□ -1.66
TRERF1Q96PN7 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC4.66□□□□□ -1.66
TRERF1Q96PN7 RNU7-107P-201ENST00000459121 61 ntBASIC4.66□□□□□ -1.66
TRERF1Q96PN7 UBE2Q2P9-201ENST00000490086 202 ntBASIC4.66□□□□□ -1.66
TRERF1Q96PN7 RPL29P14-201ENST00000495837 428 ntBASIC4.66□□□□□ -1.66
TRERF1Q96PN7 RNU6-58P-201ENST00000517143 103 ntBASIC4.66□□□□□ -1.66
TRERF1Q96PN7 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC4.66□□□□□ -1.66
TRERF1Q96PN7 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC4.66□□□□□ -1.66
TRERF1Q96PN7 MIR4429-201ENST00000580105 73 ntBASIC4.66□□□□□ -1.66
TRERF1Q96PN7 MIR3158-1-201ENST00000583596 81 ntBASIC4.66□□□□□ -1.66
TRERF1Q96PN7 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC4.66□□□□□ -1.66
TRERF1Q96PN7 AC005255.1-201ENST00000593748 216 ntBASIC4.66□□□□□ -1.66
TRERF1Q96PN7 AC006254.2-201ENST00000603259 279 ntBASIC4.66□□□□□ -1.66
TRERF1Q96PN7 AC006133.1-201ENST00000617106 264 ntBASIC4.66□□□□□ -1.66
TRERF1Q96PN7 MTND5P32-201ENST00000560711 1802 ntBASIC4.66□□□□□ -1.66
TRERF1Q96PN7 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC4.66□□□□□ -1.66
TRERF1Q96PN7 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC4.66□□□□□ -1.66
TRERF1Q96PN7 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC4.66□□□□□ -1.66
TRERF1Q96PN7 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC4.66□□□□□ -1.66
TRERF1Q96PN7 AK9-203ENST00000368948 2478 ntTSL 5 BASIC4.66□□□□□ -1.66
TRERF1Q96PN7 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC4.66□□□□□ -1.66
TRERF1Q96PN7 LINC02458-201ENST00000500381 2941 ntTSL 2 BASIC4.66□□□□□ -1.66
TRERF1Q96PN7 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC4.66□□□□□ -1.66
TRERF1Q96PN7 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
TRERF1Q96PN7 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC4.65□□□□□ -1.66
TRERF1Q96PN7 KIF15-203ENST00000425755 3460 ntTSL 5 BASIC4.65□□□□□ -1.66
TRERF1Q96PN7 OTUD4P1-201ENST00000237841 3067 ntBASIC4.65□□□□□ -1.66
TRERF1Q96PN7 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC4.65□□□□□ -1.66
TRERF1Q96PN7 AL353743.1-202ENST00000431724 1695 ntBASIC4.65□□□□□ -1.66
TRERF1Q96PN7 Y_RNA.172-201ENST00000363765 102 ntBASIC4.65□□□□□ -1.67
TRERF1Q96PN7 RNU6-72P-201ENST00000384285 79 ntBASIC4.65□□□□□ -1.67
TRERF1Q96PN7 EIF4EBP2P3-201ENST00000403144 334 ntBASIC4.65□□□□□ -1.67
TRERF1Q96PN7 Z85995.1-201ENST00000415547 335 ntBASIC4.65□□□□□ -1.67
TRERF1Q96PN7 AC074290.1-201ENST00000448883 135 ntBASIC4.65□□□□□ -1.67
TRERF1Q96PN7 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC4.65□□□□□ -1.67
TRERF1Q96PN7 RNU7-197P-201ENST00000458836 62 ntBASIC4.65□□□□□ -1.67
TRERF1Q96PN7 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC4.65□□□□□ -1.67
TRERF1Q96PN7 RNU7-143P-201ENST00000516781 65 ntBASIC4.65□□□□□ -1.67
TRERF1Q96PN7 ZNF192P1-203ENST00000565888 810 ntBASIC4.65□□□□□ -1.67
TRERF1Q96PN7 MIR5685-201ENST00000579080 79 ntBASIC4.65□□□□□ -1.67
TRERF1Q96PN7 BMS1P21-201ENST00000634565 365 ntBASIC4.65□□□□□ -1.67
TRERF1Q96PN7 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC4.65□□□□□ -1.67
TRERF1Q96PN7 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
TRERF1Q96PN7 POSTN-202ENST00000379743 3196 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
TRERF1Q96PN7 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC4.65□□□□□ -1.67
TRERF1Q96PN7 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
TRERF1Q96PN7 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC4.65□□□□□ -1.67
TRERF1Q96PN7 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 97.1 ms