Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 MIR5739-201ENST00000619803 80 ntBASIC1.69□□□□□ -2.14
CCDC54Q8NEL0 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC1.69□□□□□ -2.14
CCDC54Q8NEL0 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC1.69□□□□□ -2.14
CCDC54Q8NEL0 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC1.68□□□□□ -2.14
CCDC54Q8NEL0 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC1.68□□□□□ -2.14
CCDC54Q8NEL0 RNU6-105P-201ENST00000363909 104 ntBASIC1.68□□□□□ -2.14
CCDC54Q8NEL0 SNORA25B-201ENST00000365507 128 ntBASIC1.68□□□□□ -2.14
CCDC54Q8NEL0 SNORD116-2-201ENST00000384274 95 ntBASIC1.68□□□□□ -2.14
CCDC54Q8NEL0 RNU6-692P-201ENST00000384496 107 ntBASIC1.68□□□□□ -2.14
CCDC54Q8NEL0 SNORD116-6-201ENST00000384711 96 ntBASIC1.68□□□□□ -2.14
CCDC54Q8NEL0 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC1.68□□□□□ -2.14
CCDC54Q8NEL0 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC1.68□□□□□ -2.14
CCDC54Q8NEL0 RNU2-66P-201ENST00000410650 161 ntBASIC1.68□□□□□ -2.14
CCDC54Q8NEL0 OR9R1P-201ENST00000412200 877 ntBASIC1.68□□□□□ -2.14
CCDC54Q8NEL0 AL139156.1-201ENST00000412785 841 ntBASIC1.68□□□□□ -2.14
CCDC54Q8NEL0 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC1.68□□□□□ -2.14
CCDC54Q8NEL0 DPH3P2-201ENST00000422618 250 ntBASIC1.68□□□□□ -2.14
CCDC54Q8NEL0 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC1.68□□□□□ -2.14
CCDC54Q8NEL0 AC096920.1-201ENST00000423991 241 ntBASIC1.68□□□□□ -2.14
CCDC54Q8NEL0 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC1.68□□□□□ -2.14
CCDC54Q8NEL0 AC243964.1-201ENST00000441814 261 ntBASIC1.68□□□□□ -2.14
CCDC54Q8NEL0 PRPS1P1-201ENST00000445305 876 ntBASIC1.68□□□□□ -2.14
CCDC54Q8NEL0 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC1.68□□□□□ -2.14
CCDC54Q8NEL0 AC013470.1-201ENST00000453438 462 ntBASIC1.68□□□□□ -2.14
CCDC54Q8NEL0 AL122001.1-201ENST00000457027 370 ntBASIC1.68□□□□□ -2.14
CCDC54Q8NEL0 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC1.68□□□□□ -2.14
CCDC54Q8NEL0 RPL31P3-201ENST00000458430 332 ntBASIC1.68□□□□□ -2.14
CCDC54Q8NEL0 GMFBP1-201ENST00000467831 427 ntBASIC1.68□□□□□ -2.14
CCDC54Q8NEL0 AL049873.1-201ENST00000480540 376 ntBASIC1.68□□□□□ -2.14
CCDC54Q8NEL0 SNORA4.4-201ENST00000515921 135 ntBASIC1.68□□□□□ -2.14
CCDC54Q8NEL0 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC1.68□□□□□ -2.14
CCDC54Q8NEL0 ASPH-224ENST00000522603 842 ntTSL 1 (best) BASIC1.68□□□□□ -2.14
CCDC54Q8NEL0 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC1.68□□□□□ -2.14
CCDC54Q8NEL0 CYCSP27-201ENST00000527643 293 ntBASIC1.68□□□□□ -2.14
CCDC54Q8NEL0 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC1.68□□□□□ -2.14
CCDC54Q8NEL0 AC023050.3-201ENST00000541142 333 ntBASIC1.68□□□□□ -2.14
CCDC54Q8NEL0 PSMA3P-201ENST00000555485 635 ntBASIC1.68□□□□□ -2.14
CCDC54Q8NEL0 AL118558.2-201ENST00000556294 238 ntBASIC1.68□□□□□ -2.14
CCDC54Q8NEL0 MIR4672-201ENST00000583126 81 ntBASIC1.68□□□□□ -2.14
CCDC54Q8NEL0 MIR3611-201ENST00000584484 83 ntBASIC1.68□□□□□ -2.14
CCDC54Q8NEL0 AC068790.2-201ENST00000602601 557 ntBASIC1.68□□□□□ -2.14
CCDC54Q8NEL0 TMEM154-204ENST00000613578 486 ntAPPRIS ALT2 TSL 5 BASIC1.68□□□□□ -2.14
CCDC54Q8NEL0 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC1.68□□□□□ -2.14
CCDC54Q8NEL0 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC1.68□□□□□ -2.14
CCDC54Q8NEL0 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC1.68□□□□□ -2.14
CCDC54Q8NEL0 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC1.68□□□□□ -2.14
CCDC54Q8NEL0 RNU6-336P-201ENST00000364891 107 ntBASIC1.67□□□□□ -2.14
CCDC54Q8NEL0 Y_RNA.409-201ENST00000383990 98 ntBASIC1.67□□□□□ -2.14
CCDC54Q8NEL0 Y_RNA.582-201ENST00000391023 95 ntBASIC1.67□□□□□ -2.14
CCDC54Q8NEL0 RAP1BP3-201ENST00000407180 549 ntBASIC1.67□□□□□ -2.14
CCDC54Q8NEL0 RNA5SP390-201ENST00000410191 113 ntBASIC1.67□□□□□ -2.14
CCDC54Q8NEL0 RNA5SP489-201ENST00000410986 109 ntBASIC1.67□□□□□ -2.14
CCDC54Q8NEL0 RN7SKP192-201ENST00000411291 327 ntBASIC1.67□□□□□ -2.14
CCDC54Q8NEL0 AC138623.1-201ENST00000418060 216 ntBASIC1.67□□□□□ -2.14
CCDC54Q8NEL0 AL606489.2-201ENST00000433886 234 ntBASIC1.67□□□□□ -2.14
CCDC54Q8NEL0 TRBV25OR9-2-201ENST00000438417 374 ntBASIC1.67□□□□□ -2.14
CCDC54Q8NEL0 DNAJC19P4-201ENST00000440115 345 ntBASIC1.67□□□□□ -2.14
CCDC54Q8NEL0 FDX1P2-201ENST00000450769 375 ntBASIC1.67□□□□□ -2.14
CCDC54Q8NEL0 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC1.67□□□□□ -2.14
CCDC54Q8NEL0 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC1.67□□□□□ -2.14
CCDC54Q8NEL0 AC107953.1-201ENST00000522216 297 ntBASIC1.67□□□□□ -2.14
CCDC54Q8NEL0 AC022880.1-201ENST00000534017 973 ntBASIC1.67□□□□□ -2.14
CCDC54Q8NEL0 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC1.67□□□□□ -2.14
CCDC54Q8NEL0 NTS-203ENST00000551529 801 ntTSL 3 BASIC1.67□□□□□ -2.14
CCDC54Q8NEL0 PIGPP4-201ENST00000584447 307 ntBASIC1.67□□□□□ -2.14
CCDC54Q8NEL0 C8orf59-207ENST00000611854 563 ntAPPRIS P1 TSL 2 BASIC1.67□□□□□ -2.14
CCDC54Q8NEL0 Z99129.1-201ENST00000612510 255 ntBASIC1.67□□□□□ -2.14
CCDC54Q8NEL0 AL132822.1-201ENST00000617063 513 ntBASIC1.67□□□□□ -2.14
CCDC54Q8NEL0 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC1.67□□□□□ -2.14
CCDC54Q8NEL0 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC1.67□□□□□ -2.14
CCDC54Q8NEL0 RNU6-1285P-201ENST00000363480 105 ntBASIC1.66□□□□□ -2.14
CCDC54Q8NEL0 RNU6-266P-201ENST00000364225 107 ntBASIC1.66□□□□□ -2.14
CCDC54Q8NEL0 RNU6-234P-201ENST00000365229 104 ntBASIC1.66□□□□□ -2.14
CCDC54Q8NEL0 RNU5E-7P-201ENST00000365290 117 ntBASIC1.66□□□□□ -2.14
CCDC54Q8NEL0 Y_RNA.399-201ENST00000383955 105 ntBASIC1.66□□□□□ -2.14
CCDC54Q8NEL0 CBX3P9-201ENST00000402326 552 ntBASIC1.66□□□□□ -2.14
CCDC54Q8NEL0 AL356432.1-201ENST00000405809 419 ntBASIC1.66□□□□□ -2.14
CCDC54Q8NEL0 RNU2-29P-201ENST00000410423 189 ntBASIC1.66□□□□□ -2.14
CCDC54Q8NEL0 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC1.66□□□□□ -2.14
CCDC54Q8NEL0 AL117339.3-201ENST00000418733 162 ntBASIC1.66□□□□□ -2.14
CCDC54Q8NEL0 EIF1AXP1-201ENST00000419267 435 ntBASIC1.66□□□□□ -2.14
CCDC54Q8NEL0 AL162725.2-201ENST00000430545 748 ntTSL 5 BASIC1.66□□□□□ -2.14
CCDC54Q8NEL0 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC1.66□□□□□ -2.14
CCDC54Q8NEL0 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC1.66□□□□□ -2.14
CCDC54Q8NEL0 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC1.66□□□□□ -2.14
CCDC54Q8NEL0 AL353705.4-201ENST00000449661 238 ntBASIC1.66□□□□□ -2.14
CCDC54Q8NEL0 MTCO2P18-201ENST00000457151 658 ntBASIC1.66□□□□□ -2.14
CCDC54Q8NEL0 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC1.66□□□□□ -2.14
CCDC54Q8NEL0 AC022364.2-201ENST00000457963 554 ntBASIC1.66□□□□□ -2.14
CCDC54Q8NEL0 AC004930.1-201ENST00000470677 254 ntTSL 2 BASIC1.66□□□□□ -2.14
CCDC54Q8NEL0 RPL9P6-201ENST00000492764 598 ntBASIC1.66□□□□□ -2.14
CCDC54Q8NEL0 AC079382.1-201ENST00000493346 557 ntBASIC1.66□□□□□ -2.14
CCDC54Q8NEL0 HMGB1P29-201ENST00000505659 499 ntBASIC1.66□□□□□ -2.14
CCDC54Q8NEL0 AP003392.2-201ENST00000527269 208 ntBASIC1.66□□□□□ -2.14
CCDC54Q8NEL0 AL137161.1-201ENST00000532231 390 ntBASIC1.66□□□□□ -2.14
CCDC54Q8NEL0 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC1.66□□□□□ -2.14
CCDC54Q8NEL0 AC090115.3-201ENST00000553218 849 ntBASIC1.66□□□□□ -2.14
CCDC54Q8NEL0 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC1.66□□□□□ -2.14
CCDC54Q8NEL0 AC073648.5-201ENST00000603502 305 ntBASIC1.66□□□□□ -2.14
CCDC54Q8NEL0 AC096772.1-201ENST00000609146 564 ntBASIC1.66□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 11.2 ms