Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 AL352984.1-201ENST00000556949 276 ntTSL 3 BASIC2□□□□□ -2.09
ZNF540Q8NDQ6 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC2□□□□□ -2.09
ZNF540Q8NDQ6 TPRKBP2-201ENST00000565969 475 ntBASIC2□□□□□ -2.09
ZNF540Q8NDQ6 LRRC37A5P-203ENST00000580181 585 ntBASIC2□□□□□ -2.09
ZNF540Q8NDQ6 AC090897.2-201ENST00000581715 130 ntBASIC2□□□□□ -2.09
ZNF540Q8NDQ6 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC2□□□□□ -2.09
ZNF540Q8NDQ6 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC2□□□□□ -2.09
ZNF540Q8NDQ6 AF250324.2-201ENST00000608299 610 ntBASIC2□□□□□ -2.09
ZNF540Q8NDQ6 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC2□□□□□ -2.09
ZNF540Q8NDQ6 AC012409.4-201ENST00000612923 249 ntBASIC2□□□□□ -2.09
ZNF540Q8NDQ6 AC009831.4-201ENST00000620744 325 ntBASIC2□□□□□ -2.09
ZNF540Q8NDQ6 AC099654.12-201ENST00000639868 649 ntBASIC2□□□□□ -2.09
ZNF540Q8NDQ6 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC1.99□□□□□ -2.09
ZNF540Q8NDQ6 AC233981.2-201ENST00000611524 1614 ntBASIC1.99□□□□□ -2.09
ZNF540Q8NDQ6 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC1.99□□□□□ -2.09
ZNF540Q8NDQ6 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC1.99□□□□□ -2.09
ZNF540Q8NDQ6 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC1.99□□□□□ -2.09
ZNF540Q8NDQ6 RNU6-181P-201ENST00000363225 107 ntBASIC1.99□□□□□ -2.09
ZNF540Q8NDQ6 RNU6-74P-201ENST00000384235 107 ntBASIC1.99□□□□□ -2.09
ZNF540Q8NDQ6 SNORD14D-201ENST00000384390 87 ntBASIC1.99□□□□□ -2.09
ZNF540Q8NDQ6 RNU6-1215P-201ENST00000384441 102 ntBASIC1.99□□□□□ -2.09
ZNF540Q8NDQ6 RNU6-1274P-201ENST00000384557 107 ntBASIC1.99□□□□□ -2.09
ZNF540Q8NDQ6 RNU6-780P-201ENST00000391030 104 ntBASIC1.99□□□□□ -2.09
ZNF540Q8NDQ6 CALM2P3-201ENST00000400429 449 ntBASIC1.99□□□□□ -2.09
ZNF540Q8NDQ6 RAP1BP3-201ENST00000407180 549 ntBASIC1.99□□□□□ -2.09
ZNF540Q8NDQ6 Y_RNA.619-201ENST00000410951 90 ntBASIC1.99□□□□□ -2.09
ZNF540Q8NDQ6 AL157884.2-201ENST00000424177 551 ntTSL 3 BASIC1.99□□□□□ -2.09
ZNF540Q8NDQ6 AL451074.3-201ENST00000437709 472 ntBASIC1.99□□□□□ -2.09
ZNF540Q8NDQ6 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC1.99□□□□□ -2.09
ZNF540Q8NDQ6 snoU109.2-201ENST00000459316 135 ntBASIC1.99□□□□□ -2.09
ZNF540Q8NDQ6 HMGB3P17-201ENST00000504195 649 ntBASIC1.99□□□□□ -2.09
ZNF540Q8NDQ6 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC1.99□□□□□ -2.09
ZNF540Q8NDQ6 RNA5SP281-201ENST00000516504 135 ntBASIC1.99□□□□□ -2.09
ZNF540Q8NDQ6 RNU6-445P-201ENST00000516949 107 ntBASIC1.99□□□□□ -2.09
ZNF540Q8NDQ6 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC1.99□□□□□ -2.09
ZNF540Q8NDQ6 MTCYBP20-201ENST00000524239 1129 ntBASIC1.99□□□□□ -2.09
ZNF540Q8NDQ6 AC018630.3-201ENST00000542637 96 ntBASIC1.99□□□□□ -2.09
ZNF540Q8NDQ6 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC1.99□□□□□ -2.09
ZNF540Q8NDQ6 AC026464.5-201ENST00000562497 722 ntBASIC1.99□□□□□ -2.09
ZNF540Q8NDQ6 MIR4713-201ENST00000582691 75 ntBASIC1.99□□□□□ -2.09
ZNF540Q8NDQ6 MIR5002-201ENST00000584713 97 ntBASIC1.99□□□□□ -2.09
ZNF540Q8NDQ6 AC068792.1-201ENST00000621354 417 ntBASIC1.99□□□□□ -2.09
ZNF540Q8NDQ6 AL157786.1-207ENST00000627771 695 ntBASIC1.99□□□□□ -2.09
ZNF540Q8NDQ6 OR5AK4P-201ENST00000635912 903 ntBASIC1.99□□□□□ -2.09
ZNF540Q8NDQ6 GS1-279B7.1-204ENST00000641809 378 ntBASIC1.99□□□□□ -2.09
ZNF540Q8NDQ6 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC1.99□□□□□ -2.09
ZNF540Q8NDQ6 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.99□□□□□ -2.09
ZNF540Q8NDQ6 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC1.98□□□□□ -2.09
ZNF540Q8NDQ6 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC1.98□□□□□ -2.09
ZNF540Q8NDQ6 SNORD115-3-201ENST00000363100 82 ntBASIC1.98□□□□□ -2.09
ZNF540Q8NDQ6 RNA5SP160-201ENST00000364866 120 ntBASIC1.98□□□□□ -2.09
ZNF540Q8NDQ6 SNORA20.2-201ENST00000383922 131 ntBASIC1.98□□□□□ -2.09
ZNF540Q8NDQ6 RNU6-517P-201ENST00000384362 110 ntBASIC1.98□□□□□ -2.09
ZNF540Q8NDQ6 AC068050.1-201ENST00000394891 380 ntBASIC1.98□□□□□ -2.09
ZNF540Q8NDQ6 AC009480.1-201ENST00000402410 412 ntTSL 3 BASIC1.98□□□□□ -2.09
ZNF540Q8NDQ6 RNU6-1140P-201ENST00000410517 106 ntBASIC1.98□□□□□ -2.09
ZNF540Q8NDQ6 AL030996.1-201ENST00000411430 235 ntBASIC1.98□□□□□ -2.09
ZNF540Q8NDQ6 PIGFP2-201ENST00000421400 651 ntBASIC1.98□□□□□ -2.09
ZNF540Q8NDQ6 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC1.98□□□□□ -2.09
ZNF540Q8NDQ6 AC133104.1-201ENST00000429100 218 ntBASIC1.98□□□□□ -2.09
ZNF540Q8NDQ6 AC018634.1-201ENST00000437554 401 ntBASIC1.98□□□□□ -2.09
ZNF540Q8NDQ6 MTND1P34-201ENST00000438556 671 ntBASIC1.98□□□□□ -2.09
ZNF540Q8NDQ6 CALM1P1-201ENST00000442082 433 ntBASIC1.98□□□□□ -2.09
ZNF540Q8NDQ6 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC1.98□□□□□ -2.09
ZNF540Q8NDQ6 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC1.98□□□□□ -2.09
ZNF540Q8NDQ6 snoU13.15-201ENST00000459407 104 ntBASIC1.98□□□□□ -2.09
ZNF540Q8NDQ6 RPL23AP49-201ENST00000492925 468 ntBASIC1.98□□□□□ -2.09
ZNF540Q8NDQ6 RPS29P21-201ENST00000496272 170 ntBASIC1.98□□□□□ -2.09
ZNF540Q8NDQ6 HMGB1P29-201ENST00000505659 499 ntBASIC1.98□□□□□ -2.09
ZNF540Q8NDQ6 Vault.3-201ENST00000516676 95 ntBASIC1.98□□□□□ -2.09
ZNF540Q8NDQ6 RNA5SP364-201ENST00000516938 78 ntBASIC1.98□□□□□ -2.09
ZNF540Q8NDQ6 HSPE1P18-201ENST00000517602 280 ntBASIC1.98□□□□□ -2.09
ZNF540Q8NDQ6 MTND1P5-201ENST00000517906 940 ntBASIC1.98□□□□□ -2.09
ZNF540Q8NDQ6 AK6P1-201ENST00000540219 478 ntBASIC1.98□□□□□ -2.09
ZNF540Q8NDQ6 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC1.98□□□□□ -2.09
ZNF540Q8NDQ6 AC245505.1-201ENST00000556398 224 ntBASIC1.98□□□□□ -2.09
ZNF540Q8NDQ6 AC009269.3-201ENST00000558429 472 ntTSL 5 BASIC1.98□□□□□ -2.09
ZNF540Q8NDQ6 AL391840.1-201ENST00000571144 367 ntBASIC1.98□□□□□ -2.09
ZNF540Q8NDQ6 MIR3682-201ENST00000581338 84 ntBASIC1.98□□□□□ -2.09
ZNF540Q8NDQ6 AC245014.2-201ENST00000603689 287 ntBASIC1.98□□□□□ -2.09
ZNF540Q8NDQ6 CYP2C61P-201ENST00000604072 290 ntBASIC1.98□□□□□ -2.09
ZNF540Q8NDQ6 AC246785.4-201ENST00000605374 287 ntBASIC1.98□□□□□ -2.09
ZNF540Q8NDQ6 AL121992.2-201ENST00000606262 256 ntBASIC1.98□□□□□ -2.09
ZNF540Q8NDQ6 AC046143.2-201ENST00000609789 160 ntBASIC1.98□□□□□ -2.09
ZNF540Q8NDQ6 AL133173.2-201ENST00000614270 90 ntBASIC1.98□□□□□ -2.09
ZNF540Q8NDQ6 AC138649.3-201ENST00000622154 254 ntBASIC1.98□□□□□ -2.09
ZNF540Q8NDQ6 RNU6-212P-201ENST00000362642 104 ntBASIC1.97□□□□□ -2.09
ZNF540Q8NDQ6 Y_RNA.367-201ENST00000365544 101 ntBASIC1.97□□□□□ -2.09
ZNF540Q8NDQ6 RNU6-1179P-201ENST00000384667 107 ntBASIC1.97□□□□□ -2.09
ZNF540Q8NDQ6 Y_RNA.554-201ENST00000384672 102 ntBASIC1.97□□□□□ -2.09
ZNF540Q8NDQ6 RN7SKP223-201ENST00000410582 62 ntBASIC1.97□□□□□ -2.09
ZNF540Q8NDQ6 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC1.97□□□□□ -2.09
ZNF540Q8NDQ6 UBE2V1P4-201ENST00000425374 344 ntBASIC1.97□□□□□ -2.09
ZNF540Q8NDQ6 PRELID3BP1-201ENST00000457142 540 ntBASIC1.97□□□□□ -2.09
ZNF540Q8NDQ6 RPL21P99-201ENST00000480369 423 ntBASIC1.97□□□□□ -2.09
ZNF540Q8NDQ6 AC019235.1-201ENST00000503847 207 ntBASIC1.97□□□□□ -2.09
ZNF540Q8NDQ6 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC1.97□□□□□ -2.09
ZNF540Q8NDQ6 AC117522.1-201ENST00000509821 380 ntBASIC1.97□□□□□ -2.09
ZNF540Q8NDQ6 AC108078.2-201ENST00000510750 236 ntBASIC1.97□□□□□ -2.09
ZNF540Q8NDQ6 PTP4A1P4-201ENST00000512479 322 ntBASIC1.97□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 107.7 ms