Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC4.85□□□□□ -1.63
SH3RF1Q7Z6J0 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC4.85□□□□□ -1.63
SH3RF1Q7Z6J0 CEP152-203ENST00000399334 5097 ntAPPRIS P3 TSL 1 (best) BASIC4.85□□□□□ -1.63
SH3RF1Q7Z6J0 GHR-208ENST00000612382 4699 ntAPPRIS P1 TSL 5 BASIC4.85□□□□□ -1.63
SH3RF1Q7Z6J0 AC010300.1-201ENST00000600671 5134 ntBASIC4.85□□□□□ -1.63
SH3RF1Q7Z6J0 RNU1-100P-201ENST00000365255 165 ntBASIC4.85□□□□□ -1.63
SH3RF1Q7Z6J0 Y_RNA.420-201ENST00000384043 110 ntBASIC4.85□□□□□ -1.63
SH3RF1Q7Z6J0 RNU6-1144P-201ENST00000384247 104 ntBASIC4.85□□□□□ -1.63
SH3RF1Q7Z6J0 RNA5SP89-201ENST00000410300 108 ntBASIC4.85□□□□□ -1.63
SH3RF1Q7Z6J0 RNU6-1199P-201ENST00000411249 104 ntBASIC4.85□□□□□ -1.63
SH3RF1Q7Z6J0 RN7SKP53-201ENST00000411337 315 ntBASIC4.85□□□□□ -1.63
SH3RF1Q7Z6J0 AC009963.1-201ENST00000417265 157 ntBASIC4.85□□□□□ -1.63
SH3RF1Q7Z6J0 AC092047.1-201ENST00000424997 240 ntBASIC4.85□□□□□ -1.63
SH3RF1Q7Z6J0 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC4.85□□□□□ -1.63
SH3RF1Q7Z6J0 AL357134.1-201ENST00000445848 426 ntBASIC4.85□□□□□ -1.63
SH3RF1Q7Z6J0 RN7SL812P-201ENST00000493791 279 ntBASIC4.85□□□□□ -1.63
SH3RF1Q7Z6J0 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC4.85□□□□□ -1.63
SH3RF1Q7Z6J0 HMGB1P22-201ENST00000505315 124 ntBASIC4.85□□□□□ -1.63
SH3RF1Q7Z6J0 AL021997.2-201ENST00000615674 271 ntBASIC4.85□□□□□ -1.63
SH3RF1Q7Z6J0 CR392039.5-201ENST00000623201 510 ntBASIC4.85□□□□□ -1.63
SH3RF1Q7Z6J0 AC012442.3-202ENST00000636742 206 ntBASIC4.85□□□□□ -1.63
SH3RF1Q7Z6J0 FAR2-203ENST00000547116 1787 ntTSL 2 BASIC4.85□□□□□ -1.63
SH3RF1Q7Z6J0 CUL1P1-201ENST00000509510 2425 ntBASIC4.85□□□□□ -1.63
SH3RF1Q7Z6J0 LDHAL6CP-202ENST00000550738 3224 ntBASIC4.85□□□□□ -1.63
SH3RF1Q7Z6J0 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
SH3RF1Q7Z6J0 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC4.84□□□□□ -1.63
SH3RF1Q7Z6J0 OFD1P6Y-202ENST00000451061 2724 ntBASIC4.84□□□□□ -1.63
SH3RF1Q7Z6J0 RNU6-525P-201ENST00000363685 104 ntBASIC4.84□□□□□ -1.63
SH3RF1Q7Z6J0 Y_RNA.329-201ENST00000365209 107 ntBASIC4.84□□□□□ -1.63
SH3RF1Q7Z6J0 Y_RNA.337-201ENST00000365312 102 ntBASIC4.84□□□□□ -1.63
SH3RF1Q7Z6J0 U3.15-201ENST00000365398 212 ntBASIC4.84□□□□□ -1.63
SH3RF1Q7Z6J0 RNU6-763P-201ENST00000390865 106 ntBASIC4.84□□□□□ -1.63
SH3RF1Q7Z6J0 MIR1302-4-201ENST00000408701 150 ntBASIC4.84□□□□□ -1.63
SH3RF1Q7Z6J0 AC093578.1-201ENST00000415219 368 ntBASIC4.84□□□□□ -1.63
SH3RF1Q7Z6J0 RPL30P12-201ENST00000474666 353 ntBASIC4.84□□□□□ -1.63
SH3RF1Q7Z6J0 RPS4XP13-201ENST00000483219 789 ntBASIC4.84□□□□□ -1.63
SH3RF1Q7Z6J0 RAC1P5-201ENST00000512182 576 ntBASIC4.84□□□□□ -1.63
SH3RF1Q7Z6J0 RNU6-589P-201ENST00000516485 107 ntBASIC4.84□□□□□ -1.63
SH3RF1Q7Z6J0 AC027801.4-201ENST00000518420 395 ntTSL 5 BASIC4.84□□□□□ -1.63
SH3RF1Q7Z6J0 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC4.84□□□□□ -1.63
SH3RF1Q7Z6J0 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC4.84□□□□□ -1.63
SH3RF1Q7Z6J0 FTX_3.1-201ENST00000610451 147 ntBASIC4.84□□□□□ -1.63
SH3RF1Q7Z6J0 TEX41-243ENST00000614173 190 ntTSL 5 BASIC4.84□□□□□ -1.63
SH3RF1Q7Z6J0 ZBTB38-220ENST00000514251 7683 ntAPPRIS P1 TSL 2 BASIC4.84□□□□□ -1.63
SH3RF1Q7Z6J0 ZFX-203ENST00000379177 7558 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
SH3RF1Q7Z6J0 ROS1-201ENST00000368507 7417 ntAPPRIS ALT2 TSL 5 BASIC4.84□□□□□ -1.63
SH3RF1Q7Z6J0 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
SH3RF1Q7Z6J0 LUZP2-207ENST00000533227 5016 ntTSL 1 (best) BASIC4.84□□□□□ -1.64
SH3RF1Q7Z6J0 AP000542.2-201ENST00000623199 6179 ntBASIC4.84□□□□□ -1.64
SH3RF1Q7Z6J0 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC4.84□□□□□ -1.64
SH3RF1Q7Z6J0 ELF2-203ENST00000379550 3278 ntTSL 5 BASIC4.84□□□□□ -1.64
SH3RF1Q7Z6J0 ATP7A-202ENST00000343533 8289 ntTSL 5 BASIC4.83□□□□□ -1.64
SH3RF1Q7Z6J0 ARHGAP42-203ENST00000524892 5685 ntTSL 5 BASIC4.83□□□□□ -1.64
SH3RF1Q7Z6J0 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
SH3RF1Q7Z6J0 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC4.83□□□□□ -1.64
SH3RF1Q7Z6J0 SNORA63.1-201ENST00000362493 131 ntBASIC4.83□□□□□ -1.64
SH3RF1Q7Z6J0 RNU1-73P-201ENST00000383971 164 ntBASIC4.83□□□□□ -1.64
SH3RF1Q7Z6J0 RNU6-245P-201ENST00000384020 107 ntBASIC4.83□□□□□ -1.64
SH3RF1Q7Z6J0 MIR200C-201ENST00000384980 68 ntBASIC4.83□□□□□ -1.64
SH3RF1Q7Z6J0 PVALB-202ENST00000404171 422 ntTSL 2 BASIC4.83□□□□□ -1.64
SH3RF1Q7Z6J0 RNU6ATAC-201ENST00000408749 126 ntBASIC4.83□□□□□ -1.64
SH3RF1Q7Z6J0 ELOCP21-201ENST00000412558 336 ntBASIC4.83□□□□□ -1.64
SH3RF1Q7Z6J0 YME1L1P1-201ENST00000429435 297 ntBASIC4.83□□□□□ -1.64
SH3RF1Q7Z6J0 EEF1B2P7-201ENST00000451177 676 ntBASIC4.83□□□□□ -1.64
SH3RF1Q7Z6J0 PRSS3P4-201ENST00000453323 162 ntBASIC4.83□□□□□ -1.64
SH3RF1Q7Z6J0 SNORD108-201ENST00000459332 71 ntBASIC4.83□□□□□ -1.64
SH3RF1Q7Z6J0 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC4.83□□□□□ -1.64
SH3RF1Q7Z6J0 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
SH3RF1Q7Z6J0 AC021269.2-201ENST00000532318 330 ntBASIC4.83□□□□□ -1.64
SH3RF1Q7Z6J0 AC006064.5-201ENST00000541782 248 ntBASIC4.83□□□□□ -1.64
SH3RF1Q7Z6J0 AC012468.1-201ENST00000604888 430 ntBASIC4.83□□□□□ -1.64
SH3RF1Q7Z6J0 AC069294.1-201ENST00000608397 350 ntBASIC4.83□□□□□ -1.64
SH3RF1Q7Z6J0 MIR6134-201ENST00000617606 109 ntBASIC4.83□□□□□ -1.64
SH3RF1Q7Z6J0 TEX41-300ENST00000631048 69 ntTSL 5 BASIC4.83□□□□□ -1.64
SH3RF1Q7Z6J0 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
SH3RF1Q7Z6J0 CD200R1-204ENST00000471858 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC4.83□□□□□ -1.64
SH3RF1Q7Z6J0 MTND5P32-201ENST00000560711 1802 ntBASIC4.83□□□□□ -1.64
SH3RF1Q7Z6J0 STON1-GTF2A1L-202ENST00000394754 3824 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
SH3RF1Q7Z6J0 LCOR-204ENST00000371103 10342 ntAPPRIS P3 TSL 1 (best) BASIC4.83□□□□□ -1.64
SH3RF1Q7Z6J0 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
SH3RF1Q7Z6J0 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC4.82□□□□□ -1.64
SH3RF1Q7Z6J0 AC073073.2-201ENST00000609827 2578 ntBASIC4.82□□□□□ -1.64
SH3RF1Q7Z6J0 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
SH3RF1Q7Z6J0 SNORD37.2-201ENST00000391075 66 ntBASIC4.82□□□□□ -1.64
SH3RF1Q7Z6J0 AP000705.1-201ENST00000454567 350 ntBASIC4.82□□□□□ -1.64
SH3RF1Q7Z6J0 RNA5SP519-201ENST00000516480 119 ntBASIC4.82□□□□□ -1.64
SH3RF1Q7Z6J0 Y_RNA.694-201ENST00000516677 117 ntBASIC4.82□□□□□ -1.64
SH3RF1Q7Z6J0 IFITM8P-201ENST00000522529 394 ntBASIC4.82□□□□□ -1.64
SH3RF1Q7Z6J0 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC4.82□□□□□ -1.64
SH3RF1Q7Z6J0 AC008739.3-201ENST00000603262 127 ntBASIC4.82□□□□□ -1.64
SH3RF1Q7Z6J0 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC4.82□□□□□ -1.64
SH3RF1Q7Z6J0 AL078604.3-201ENST00000615580 211 ntBASIC4.82□□□□□ -1.64
SH3RF1Q7Z6J0 AL513314.2-204ENST00000619187 459 ntTSL 5 BASIC4.82□□□□□ -1.64
SH3RF1Q7Z6J0 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC4.82□□□□□ -1.64
SH3RF1Q7Z6J0 AKAP11-201ENST00000025301 9920 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
SH3RF1Q7Z6J0 EIF4E3-202ENST00000389826 6083 ntTSL 5 BASIC4.82□□□□□ -1.64
SH3RF1Q7Z6J0 DCX-202ENST00000358070 9405 ntAPPRIS ALT1 TSL 1 (best) BASIC4.82□□□□□ -1.64
SH3RF1Q7Z6J0 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC4.82□□□□□ -1.64
SH3RF1Q7Z6J0 MARCH1-201ENST00000274056 5367 ntAPPRIS P1 TSL 4 BASIC4.82□□□□□ -1.64
SH3RF1Q7Z6J0 SLC30A6-205ENST00000435660 4776 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 114.5 ms