Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 RNU6-512P-201ENST00000364438 103 ntBASIC2.33□□□□□ -2.04
LMO4P61968 RNU6-1329P-201ENST00000365664 107 ntBASIC2.33□□□□□ -2.04
LMO4P61968 RNU6-26P-201ENST00000383985 107 ntBASIC2.33□□□□□ -2.04
LMO4P61968 RNU6-842P-201ENST00000384269 107 ntBASIC2.33□□□□□ -2.04
LMO4P61968 Y_RNA.557-201ENST00000384680 107 ntBASIC2.33□□□□□ -2.04
LMO4P61968 MIR9-1-201ENST00000385198 89 ntBASIC2.33□□□□□ -2.04
LMO4P61968 SNORD73A-201ENST00000386062 65 ntBASIC2.33□□□□□ -2.04
LMO4P61968 MIR888-201ENST00000401186 77 ntBASIC2.33□□□□□ -2.04
LMO4P61968 AL138827.1-201ENST00000402666 306 ntBASIC2.33□□□□□ -2.04
LMO4P61968 RNU2-3P-201ENST00000410144 191 ntBASIC2.33□□□□□ -2.04
LMO4P61968 RNU6-293P-201ENST00000411259 106 ntBASIC2.33□□□□□ -2.04
LMO4P61968 RNU6-607P-201ENST00000411283 108 ntBASIC2.33□□□□□ -2.04
LMO4P61968 HMGB3P2-201ENST00000411913 584 ntBASIC2.33□□□□□ -2.04
LMO4P61968 CYCSP33-201ENST00000414485 327 ntBASIC2.33□□□□□ -2.04
LMO4P61968 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC2.33□□□□□ -2.04
LMO4P61968 RPS15AP6-201ENST00000420703 385 ntBASIC2.33□□□□□ -2.04
LMO4P61968 UBE2V1P4-201ENST00000425374 344 ntBASIC2.33□□□□□ -2.04
LMO4P61968 RAB6C-AS1-202ENST00000433431 123 ntBASIC2.33□□□□□ -2.04
LMO4P61968 AL645568.3-201ENST00000433683 316 ntBASIC2.33□□□□□ -2.04
LMO4P61968 SNRPEP9-201ENST00000436794 238 ntBASIC2.33□□□□□ -2.04
LMO4P61968 KRTAP19-11P-201ENST00000439851 104 ntBASIC2.33□□□□□ -2.04
LMO4P61968 RPL23AP58-201ENST00000440453 469 ntBASIC2.33□□□□□ -2.04
LMO4P61968 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC2.33□□□□□ -2.04
LMO4P61968 UQCRHP3-201ENST00000451503 251 ntBASIC2.33□□□□□ -2.04
LMO4P61968 RPL7P5-201ENST00000471472 736 ntBASIC2.33□□□□□ -2.04
LMO4P61968 AC022493.2-201ENST00000506122 481 ntBASIC2.33□□□□□ -2.04
LMO4P61968 RNU4ATAC15P-201ENST00000516415 126 ntBASIC2.33□□□□□ -2.04
LMO4P61968 AC069113.1-201ENST00000517763 267 ntBASIC2.33□□□□□ -2.04
LMO4P61968 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
LMO4P61968 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC2.33□□□□□ -2.04
LMO4P61968 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC2.33□□□□□ -2.04
LMO4P61968 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC2.33□□□□□ -2.04
LMO4P61968 AC008269.2-201ENST00000561915 1105 ntBASIC2.33□□□□□ -2.04
LMO4P61968 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC2.33□□□□□ -2.04
LMO4P61968 MIR3149-201ENST00000584629 83 ntBASIC2.33□□□□□ -2.04
LMO4P61968 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC2.33□□□□□ -2.04
LMO4P61968 AC006006.1-201ENST00000603082 144 ntBASIC2.33□□□□□ -2.04
LMO4P61968 RNU6-85P-201ENST00000605989 107 ntBASIC2.33□□□□□ -2.04
LMO4P61968 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC2.33□□□□□ -2.04
LMO4P61968 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC2.33□□□□□ -2.04
LMO4P61968 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC2.33□□□□□ -2.04
LMO4P61968 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC2.33□□□□□ -2.04
LMO4P61968 MTND5P7-201ENST00000413558 1798 ntBASIC2.33□□□□□ -2.04
LMO4P61968 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC2.32□□□□□ -2.04
LMO4P61968 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
LMO4P61968 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC2.32□□□□□ -2.04
LMO4P61968 Y_RNA.2-201ENST00000362330 96 ntBASIC2.32□□□□□ -2.04
LMO4P61968 RNU1-35P-201ENST00000362782 153 ntBASIC2.32□□□□□ -2.04
LMO4P61968 RNU6-490P-201ENST00000362985 107 ntBASIC2.32□□□□□ -2.04
LMO4P61968 Y_RNA.452-201ENST00000384202 108 ntBASIC2.32□□□□□ -2.04
LMO4P61968 RNU6-505P-201ENST00000384427 107 ntBASIC2.32□□□□□ -2.04
LMO4P61968 MIR517A-201ENST00000385001 87 ntBASIC2.32□□□□□ -2.04
LMO4P61968 Y_RNA.645-201ENST00000391229 102 ntBASIC2.32□□□□□ -2.04
LMO4P61968 HMGN2P30-201ENST00000423237 256 ntBASIC2.32□□□□□ -2.04
LMO4P61968 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC2.32□□□□□ -2.04
LMO4P61968 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC2.32□□□□□ -2.04
LMO4P61968 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC2.32□□□□□ -2.04
LMO4P61968 FTH1P25-201ENST00000447665 469 ntBASIC2.32□□□□□ -2.04
LMO4P61968 AC125238.1-201ENST00000448842 249 ntBASIC2.32□□□□□ -2.04
LMO4P61968 SNORD109B-201ENST00000458961 67 ntBASIC2.32□□□□□ -2.04
LMO4P61968 SNORD109A-201ENST00000459128 67 ntBASIC2.32□□□□□ -2.04
LMO4P61968 AC022493.1-201ENST00000492984 337 ntBASIC2.32□□□□□ -2.04
LMO4P61968 RPS27P26-201ENST00000494583 239 ntBASIC2.32□□□□□ -2.04
LMO4P61968 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC2.32□□□□□ -2.04
LMO4P61968 RNU1-86P-201ENST00000516108 154 ntBASIC2.32□□□□□ -2.04
LMO4P61968 RNU1-107P-201ENST00000516617 154 ntBASIC2.32□□□□□ -2.04
LMO4P61968 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC2.32□□□□□ -2.04
LMO4P61968 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC2.32□□□□□ -2.04
LMO4P61968 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC2.32□□□□□ -2.04
LMO4P61968 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC2.32□□□□□ -2.04
LMO4P61968 AC109446.1-201ENST00000566172 220 ntBASIC2.32□□□□□ -2.04
LMO4P61968 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC2.32□□□□□ -2.04
LMO4P61968 VN1R107P-201ENST00000601784 209 ntBASIC2.32□□□□□ -2.04
LMO4P61968 AC098826.3-201ENST00000603823 466 ntBASIC2.32□□□□□ -2.04
LMO4P61968 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC2.32□□□□□ -2.04
LMO4P61968 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
LMO4P61968 AL136360.1-201ENST00000503377 1900 ntBASIC2.32□□□□□ -2.04
LMO4P61968 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
LMO4P61968 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
LMO4P61968 Y_RNA.80-201ENST00000362996 102 ntBASIC2.31□□□□□ -2.04
LMO4P61968 Y_RNA.153-201ENST00000363615 91 ntBASIC2.31□□□□□ -2.04
LMO4P61968 RNU6-884P-201ENST00000363889 107 ntBASIC2.31□□□□□ -2.04
LMO4P61968 Y_RNA.193-201ENST00000363979 102 ntBASIC2.31□□□□□ -2.04
LMO4P61968 RNU1-115P-201ENST00000365329 160 ntBASIC2.31□□□□□ -2.04
LMO4P61968 RFX3-203ENST00000381984 364 ntTSL 3 BASIC2.31□□□□□ -2.04
LMO4P61968 RNU6-1179P-201ENST00000384667 107 ntBASIC2.31□□□□□ -2.04
LMO4P61968 MIR512-1-201ENST00000384913 84 ntBASIC2.31□□□□□ -2.04
LMO4P61968 RNU2-52P-201ENST00000410680 190 ntBASIC2.31□□□□□ -2.04
LMO4P61968 RNA5SP21-201ENST00000410917 96 ntBASIC2.31□□□□□ -2.04
LMO4P61968 RN7SKP58-201ENST00000411010 305 ntBASIC2.31□□□□□ -2.04
LMO4P61968 AL353621.1-201ENST00000418219 243 ntBASIC2.31□□□□□ -2.04
LMO4P61968 AL365496.1-201ENST00000426885 215 ntBASIC2.31□□□□□ -2.04
LMO4P61968 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC2.31□□□□□ -2.04
LMO4P61968 AL133396.1-201ENST00000432048 687 ntBASIC2.31□□□□□ -2.04
LMO4P61968 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC2.31□□□□□ -2.04
LMO4P61968 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC2.31□□□□□ -2.04
LMO4P61968 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC2.31□□□□□ -2.04
LMO4P61968 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC2.31□□□□□ -2.04
LMO4P61968 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC2.31□□□□□ -2.04
LMO4P61968 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC2.31□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 105 ms