Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 HSPE1P24-201ENST00000450782 238 ntBASIC1.27□□□□□ -2.21
FOXA1P55317 AL137159.1-201ENST00000452808 512 ntBASIC1.27□□□□□ -2.21
FOXA1P55317 RNU1-123P-201ENST00000458950 160 ntBASIC1.27□□□□□ -2.21
FOXA1P55317 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC1.27□□□□□ -2.21
FOXA1P55317 AC116562.3-201ENST00000506136 177 ntBASIC1.27□□□□□ -2.21
FOXA1P55317 AC117460.1-201ENST00000508964 467 ntTSL 3 BASIC1.27□□□□□ -2.21
FOXA1P55317 Vault.3-201ENST00000516676 95 ntBASIC1.27□□□□□ -2.21
FOXA1P55317 RNU6-685P-201ENST00000517088 95 ntBASIC1.27□□□□□ -2.21
FOXA1P55317 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC1.27□□□□□ -2.21
FOXA1P55317 AP003730.2-202ENST00000527281 774 ntTSL 3 BASIC1.27□□□□□ -2.21
FOXA1P55317 AC068587.5-201ENST00000528506 175 ntBASIC1.27□□□□□ -2.21
FOXA1P55317 UBE2Q2P8-201ENST00000560644 102 ntBASIC1.27□□□□□ -2.21
FOXA1P55317 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC1.27□□□□□ -2.21
FOXA1P55317 BNIP3P8-201ENST00000597863 560 ntBASIC1.27□□□□□ -2.21
FOXA1P55317 CLIC4P2-201ENST00000601934 717 ntBASIC1.27□□□□□ -2.21
FOXA1P55317 AC012360.2-201ENST00000609349 391 ntBASIC1.27□□□□□ -2.21
FOXA1P55317 AC122133.1-201ENST00000613964 233 ntBASIC1.27□□□□□ -2.21
FOXA1P55317 AC093648.1-201ENST00000623546 606 ntBASIC1.27□□□□□ -2.21
FOXA1P55317 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC1.27□□□□□ -2.21
FOXA1P55317 RNU6-212P-201ENST00000362642 104 ntBASIC1.26□□□□□ -2.21
FOXA1P55317 SNORD56.1-201ENST00000362913 68 ntBASIC1.26□□□□□ -2.21
FOXA1P55317 SNORD115-3-201ENST00000363100 82 ntBASIC1.26□□□□□ -2.21
FOXA1P55317 RNU6-1210P-201ENST00000363775 107 ntBASIC1.26□□□□□ -2.21
FOXA1P55317 Y_RNA.226-201ENST00000364337 114 ntBASIC1.26□□□□□ -2.21
FOXA1P55317 RNA5SP390-201ENST00000410191 113 ntBASIC1.26□□□□□ -2.21
FOXA1P55317 RNU2-48P-201ENST00000410694 191 ntBASIC1.26□□□□□ -2.21
FOXA1P55317 RNU6-195P-201ENST00000411352 109 ntBASIC1.26□□□□□ -2.21
FOXA1P55317 RPS3AP3-201ENST00000411933 242 ntBASIC1.26□□□□□ -2.21
FOXA1P55317 C1DP2-201ENST00000418167 426 ntBASIC1.26□□□□□ -2.21
FOXA1P55317 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC1.26□□□□□ -2.21
FOXA1P55317 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC1.26□□□□□ -2.21
FOXA1P55317 HSPE1P21-201ENST00000438283 308 ntBASIC1.26□□□□□ -2.21
FOXA1P55317 AC073614.1-201ENST00000438690 650 ntBASIC1.26□□□□□ -2.21
FOXA1P55317 LINC00354-202ENST00000440860 376 ntTSL 2 BASIC1.26□□□□□ -2.21
FOXA1P55317 AC006026.2-201ENST00000457376 180 ntBASIC1.26□□□□□ -2.21
FOXA1P55317 AC006512.1-201ENST00000468816 291 ntBASIC1.26□□□□□ -2.21
FOXA1P55317 AC004223.1-201ENST00000479840 271 ntBASIC1.26□□□□□ -2.21
FOXA1P55317 MTCO3P9-201ENST00000506989 781 ntBASIC1.26□□□□□ -2.21
FOXA1P55317 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC1.26□□□□□ -2.21
FOXA1P55317 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.26□□□□□ -2.21
FOXA1P55317 MTND3P25-201ENST00000509243 135 ntBASIC1.26□□□□□ -2.21
FOXA1P55317 AC090572.1-201ENST00000519251 160 ntBASIC1.26□□□□□ -2.21
FOXA1P55317 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC1.26□□□□□ -2.21
FOXA1P55317 AP003392.2-201ENST00000527269 208 ntBASIC1.26□□□□□ -2.21
FOXA1P55317 CYCSP27-201ENST00000527643 293 ntBASIC1.26□□□□□ -2.21
FOXA1P55317 AP000763.2-201ENST00000540641 163 ntBASIC1.26□□□□□ -2.21
FOXA1P55317 DNAJC19P9-201ENST00000555084 351 ntBASIC1.26□□□□□ -2.21
FOXA1P55317 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC1.26□□□□□ -2.21
FOXA1P55317 SUB1P3-201ENST00000564581 315 ntBASIC1.26□□□□□ -2.21
FOXA1P55317 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC1.26□□□□□ -2.21
FOXA1P55317 MIR5692A1-201ENST00000580523 69 ntBASIC1.26□□□□□ -2.21
FOXA1P55317 AC073539.2-201ENST00000597113 165 ntBASIC1.26□□□□□ -2.21
FOXA1P55317 SNRPGP17-201ENST00000603780 214 ntBASIC1.26□□□□□ -2.21
FOXA1P55317 AC090578.1-201ENST00000604955 591 ntBASIC1.26□□□□□ -2.21
FOXA1P55317 Z82243.1-201ENST00000609432 473 ntBASIC1.26□□□□□ -2.21
FOXA1P55317 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC1.26□□□□□ -2.21
FOXA1P55317 AC026585.1-201ENST00000619582 524 ntBASIC1.26□□□□□ -2.21
FOXA1P55317 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC1.26□□□□□ -2.21
FOXA1P55317 RMST_7.1-201ENST00000621935 268 ntBASIC1.26□□□□□ -2.21
FOXA1P55317 AL603839.4-201ENST00000624658 1005 ntBASIC1.26□□□□□ -2.21
FOXA1P55317 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC1.26□□□□□ -2.21
FOXA1P55317 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC1.26□□□□□ -2.21
FOXA1P55317 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC1.26□□□□□ -2.21
FOXA1P55317 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC1.26□□□□□ -2.21
FOXA1P55317 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.26□□□□□ -2.21
FOXA1P55317 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC1.25□□□□□ -2.21
FOXA1P55317 MT-ATP6-201ENST00000361899 681 ntAPPRIS P1 BASIC1.25□□□□□ -2.21
FOXA1P55317 SNORD115-7-201ENST00000365306 82 ntBASIC1.25□□□□□ -2.21
FOXA1P55317 MIR934-201ENST00000401241 83 ntBASIC1.25□□□□□ -2.21
FOXA1P55317 CBX3P9-201ENST00000402326 552 ntBASIC1.25□□□□□ -2.21
FOXA1P55317 RNU2-32P-201ENST00000411193 191 ntBASIC1.25□□□□□ -2.21
FOXA1P55317 RNU6-387P-201ENST00000411331 105 ntBASIC1.25□□□□□ -2.21
FOXA1P55317 AL158823.1-201ENST00000418441 478 ntBASIC1.25□□□□□ -2.21
FOXA1P55317 ATP6V0E1P3-201ENST00000420036 246 ntBASIC1.25□□□□□ -2.21
FOXA1P55317 MTND2P9-201ENST00000422293 931 ntBASIC1.25□□□□□ -2.21
FOXA1P55317 AC003659.1-201ENST00000424251 465 ntTSL 5 BASIC1.25□□□□□ -2.21
FOXA1P55317 AC073641.1-201ENST00000425192 429 ntTSL 3 BASIC1.25□□□□□ -2.21
FOXA1P55317 AL512656.1-201ENST00000427492 401 ntTSL 2 BASIC1.25□□□□□ -2.21
FOXA1P55317 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC1.25□□□□□ -2.21
FOXA1P55317 MTCYBP1-201ENST00000454315 1119 ntBASIC1.25□□□□□ -2.21
FOXA1P55317 snoU13.14-201ENST00000459372 104 ntBASIC1.25□□□□□ -2.21
FOXA1P55317 RPL30P12-201ENST00000474666 353 ntBASIC1.25□□□□□ -2.21
FOXA1P55317 AC005840.1-201ENST00000498412 377 ntBASIC1.25□□□□□ -2.21
FOXA1P55317 LINC02462-201ENST00000503009 430 ntTSL 5 BASIC1.25□□□□□ -2.21
FOXA1P55317 AC104806.1-201ENST00000508720 308 ntBASIC1.25□□□□□ -2.21
FOXA1P55317 MTND1P22-201ENST00000510572 951 ntBASIC1.25□□□□□ -2.21
FOXA1P55317 AC090821.2-201ENST00000523552 176 ntBASIC1.25□□□□□ -2.21
FOXA1P55317 AP005597.4-201ENST00000526762 229 ntBASIC1.25□□□□□ -2.21
FOXA1P55317 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC1.25□□□□□ -2.21
FOXA1P55317 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC1.25□□□□□ -2.21
FOXA1P55317 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC1.25□□□□□ -2.21
FOXA1P55317 AL442163.1-201ENST00000557251 515 ntTSL 5 BASIC1.25□□□□□ -2.21
FOXA1P55317 MIR4760-201ENST00000585040 80 ntBASIC1.25□□□□□ -2.21
FOXA1P55317 AL359821.1-201ENST00000605519 182 ntBASIC1.25□□□□□ -2.21
FOXA1P55317 AL360219.1-201ENST00000610230 366 ntBASIC1.25□□□□□ -2.21
FOXA1P55317 TMEM154-204ENST00000613578 486 ntAPPRIS ALT2 TSL 5 BASIC1.25□□□□□ -2.21
FOXA1P55317 AC008250.2-201ENST00000615261 205 ntBASIC1.25□□□□□ -2.21
FOXA1P55317 RMST_4.1-201ENST00000616886 107 ntBASIC1.25□□□□□ -2.21
FOXA1P55317 AC138649.3-201ENST00000622154 254 ntBASIC1.25□□□□□ -2.21
FOXA1P55317 FARSBP1-201ENST00000435808 1778 ntBASIC1.25□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 89.9 ms