Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 VTRNA2-2P-201ENST00000516091 103 ntBASIC2.48□□□□□ -2.01
HOXA1P49639 SNORA31.11-201ENST00000516528 139 ntBASIC2.48□□□□□ -2.01
HOXA1P49639 SNORA31.23-201ENST00000517219 133 ntBASIC2.48□□□□□ -2.01
HOXA1P49639 AP005902.1-201ENST00000521358 186 ntBASIC2.48□□□□□ -2.01
HOXA1P49639 SARNP-203ENST00000552080 726 ntTSL 2 BASIC2.48□□□□□ -2.01
HOXA1P49639 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC2.48□□□□□ -2.01
HOXA1P49639 MIR5690-201ENST00000583739 73 ntBASIC2.48□□□□□ -2.01
HOXA1P49639 AL158827.2-201ENST00000602494 330 ntBASIC2.48□□□□□ -2.01
HOXA1P49639 AL137843.1-201ENST00000605078 385 ntBASIC2.48□□□□□ -2.01
HOXA1P49639 DLEU2_6.1-201ENST00000610536 112 ntBASIC2.48□□□□□ -2.01
HOXA1P49639 AC004852.3-201ENST00000614131 326 ntBASIC2.48□□□□□ -2.01
HOXA1P49639 AL691447.3-201ENST00000635020 330 ntBASIC2.48□□□□□ -2.01
HOXA1P49639 AC110079.1-202ENST00000635213 138 ntBASIC2.48□□□□□ -2.01
HOXA1P49639 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC2.48□□□□□ -2.01
HOXA1P49639 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
HOXA1P49639 MTCO1P12-201ENST00000414273 1543 ntBASIC2.47□□□□□ -2.01
HOXA1P49639 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.47□□□□□ -2.01
HOXA1P49639 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC2.47□□□□□ -2.01
HOXA1P49639 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC2.47□□□□□ -2.01
HOXA1P49639 RNA5SP72-201ENST00000364442 117 ntBASIC2.47□□□□□ -2.01
HOXA1P49639 U8.8-201ENST00000365399 135 ntBASIC2.47□□□□□ -2.01
HOXA1P49639 RNU6-1011P-201ENST00000384668 107 ntBASIC2.47□□□□□ -2.01
HOXA1P49639 RNU6-1106P-201ENST00000390845 107 ntBASIC2.47□□□□□ -2.01
HOXA1P49639 RPS29P13-201ENST00000402041 169 ntBASIC2.47□□□□□ -2.01
HOXA1P49639 HNRNPDLP1-201ENST00000412834 550 ntBASIC2.47□□□□□ -2.01
HOXA1P49639 AL591043.1-201ENST00000432461 424 ntBASIC2.47□□□□□ -2.01
HOXA1P49639 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC2.47□□□□□ -2.01
HOXA1P49639 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC2.47□□□□□ -2.01
HOXA1P49639 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC2.47□□□□□ -2.01
HOXA1P49639 NIPA2P5-201ENST00000452282 464 ntBASIC2.47□□□□□ -2.01
HOXA1P49639 FTH1P2-201ENST00000466086 412 ntBASIC2.47□□□□□ -2.01
HOXA1P49639 AP001025.1-201ENST00000486139 332 ntBASIC2.47□□□□□ -2.01
HOXA1P49639 AC097473.1-201ENST00000508142 408 ntBASIC2.47□□□□□ -2.01
HOXA1P49639 AC108043.1-201ENST00000512696 574 ntBASIC2.47□□□□□ -2.01
HOXA1P49639 SCARNA13-201ENST00000516672 275 ntBASIC2.47□□□□□ -2.01
HOXA1P49639 CBX3P8-201ENST00000532412 525 ntBASIC2.47□□□□□ -2.01
HOXA1P49639 MIR3922-201ENST00000585192 84 ntBASIC2.47□□□□□ -2.01
HOXA1P49639 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC2.47□□□□□ -2.01
HOXA1P49639 AL355877.2-201ENST00000603670 358 ntBASIC2.47□□□□□ -2.01
HOXA1P49639 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC2.47□□□□□ -2.01
HOXA1P49639 AC006133.1-201ENST00000617106 264 ntBASIC2.47□□□□□ -2.01
HOXA1P49639 MIR6075-201ENST00000620782 95 ntBASIC2.47□□□□□ -2.01
HOXA1P49639 AC090971.5-201ENST00000621102 293 ntBASIC2.47□□□□□ -2.01
HOXA1P49639 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC2.47□□□□□ -2.01
HOXA1P49639 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC2.46□□□□□ -2.01
HOXA1P49639 Z82195.2-201ENST00000612348 18351 ntBASIC2.46□□□□□ -2.01
HOXA1P49639 AC004944.1-201ENST00000517807 3059 ntBASIC2.46□□□□□ -2.02
HOXA1P49639 Y_RNA.31-201ENST00000362574 102 ntBASIC2.46□□□□□ -2.02
HOXA1P49639 Y_RNA.123-201ENST00000363338 102 ntBASIC2.46□□□□□ -2.02
HOXA1P49639 DEFA7P-201ENST00000382676 285 ntBASIC2.46□□□□□ -2.02
HOXA1P49639 Y_RNA.533-201ENST00000384596 114 ntBASIC2.46□□□□□ -2.02
HOXA1P49639 SNORD15B-201ENST00000384714 146 ntBASIC2.46□□□□□ -2.02
HOXA1P49639 RNU6-19P-201ENST00000384718 107 ntBASIC2.46□□□□□ -2.02
HOXA1P49639 MIR544A-201ENST00000384855 91 ntBASIC2.46□□□□□ -2.02
HOXA1P49639 MIR592-201ENST00000384959 97 ntBASIC2.46□□□□□ -2.02
HOXA1P49639 MIR767-201ENST00000390228 109 ntBASIC2.46□□□□□ -2.02
HOXA1P49639 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC2.46□□□□□ -2.02
HOXA1P49639 AC243428.1-201ENST00000421099 264 ntBASIC2.46□□□□□ -2.02
HOXA1P49639 PTGES3P4-201ENST00000426243 356 ntBASIC2.46□□□□□ -2.02
HOXA1P49639 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC2.46□□□□□ -2.02
HOXA1P49639 AC009296.1-201ENST00000443146 155 ntBASIC2.46□□□□□ -2.02
HOXA1P49639 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC2.46□□□□□ -2.02
HOXA1P49639 ELOCP24-201ENST00000456370 334 ntBASIC2.46□□□□□ -2.02
HOXA1P49639 RNU7-152P-201ENST00000458982 64 ntBASIC2.46□□□□□ -2.02
HOXA1P49639 RPL30P12-201ENST00000474666 353 ntBASIC2.46□□□□□ -2.02
HOXA1P49639 RN7SL20P-201ENST00000488827 297 ntBASIC2.46□□□□□ -2.02
HOXA1P49639 RNU6ATAC13P-201ENST00000516152 131 ntBASIC2.46□□□□□ -2.02
HOXA1P49639 SNORA67.7-201ENST00000516664 135 ntBASIC2.46□□□□□ -2.02
HOXA1P49639 RN7SKP272-201ENST00000516988 232 ntBASIC2.46□□□□□ -2.02
HOXA1P49639 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC2.46□□□□□ -2.02
HOXA1P49639 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC2.46□□□□□ -2.02
HOXA1P49639 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC2.46□□□□□ -2.02
HOXA1P49639 RPL23AP78-201ENST00000599928 470 ntBASIC2.46□□□□□ -2.02
HOXA1P49639 AL080274.1-201ENST00000605565 220 ntBASIC2.46□□□□□ -2.02
HOXA1P49639 HMGB1P24-202ENST00000615653 685 ntBASIC2.46□□□□□ -2.02
HOXA1P49639 AC007742.2-201ENST00000618226 398 ntBASIC2.46□□□□□ -2.02
HOXA1P49639 AC099654.7-201ENST00000635788 2127 ntBASIC2.46□□□□□ -2.02
HOXA1P49639 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.46□□□□□ -2.02
HOXA1P49639 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC2.46□□□□□ -2.02
HOXA1P49639 AC026241.1-201ENST00000517873 2142 ntBASIC2.45□□□□□ -2.02
HOXA1P49639 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC2.45□□□□□ -2.02
HOXA1P49639 MIR6073-201ENST00000352083 89 ntBASIC2.45□□□□□ -2.02
HOXA1P49639 Y_RNA.146-201ENST00000363549 102 ntBASIC2.45□□□□□ -2.02
HOXA1P49639 Y_RNA.187-201ENST00000363918 113 ntBASIC2.45□□□□□ -2.02
HOXA1P49639 RNA5SP139-201ENST00000364340 117 ntBASIC2.45□□□□□ -2.02
HOXA1P49639 Y_RNA.431-201ENST00000384086 102 ntBASIC2.45□□□□□ -2.02
HOXA1P49639 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC2.45□□□□□ -2.02
HOXA1P49639 RNU6-750P-201ENST00000390946 107 ntBASIC2.45□□□□□ -2.02
HOXA1P49639 RNU6-174P-201ENST00000410406 106 ntBASIC2.45□□□□□ -2.02
HOXA1P49639 NUP35P1-201ENST00000422734 947 ntBASIC2.45□□□□□ -2.02
HOXA1P49639 USMG5P1-201ENST00000425964 177 ntBASIC2.45□□□□□ -2.02
HOXA1P49639 AC091286.1-201ENST00000431233 461 ntBASIC2.45□□□□□ -2.02
HOXA1P49639 RPL23AP50-201ENST00000434149 455 ntBASIC2.45□□□□□ -2.02
HOXA1P49639 AC006028.1-201ENST00000438379 402 ntBASIC2.45□□□□□ -2.02
HOXA1P49639 AC007969.2-201ENST00000441891 191 ntBASIC2.45□□□□□ -2.02
HOXA1P49639 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC2.45□□□□□ -2.02
HOXA1P49639 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC2.45□□□□□ -2.02
HOXA1P49639 U8.21-201ENST00000459536 136 ntBASIC2.45□□□□□ -2.02
HOXA1P49639 AP001324.2-201ENST00000461163 319 ntBASIC2.45□□□□□ -2.02
HOXA1P49639 RN7SL863P-201ENST00000462370 296 ntBASIC2.45□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 347 ms