Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 RNU6-293P-201ENST00000411259 106 ntBASIC1.49□□□□□ -2.17
BRCA1P38398 CYCSP33-201ENST00000414485 327 ntBASIC1.49□□□□□ -2.17
BRCA1P38398 VN1R36P-201ENST00000414936 291 ntBASIC1.49□□□□□ -2.17
BRCA1P38398 RPL21P90-201ENST00000415692 466 ntBASIC1.49□□□□□ -2.17
BRCA1P38398 MTND3P17-201ENST00000416968 344 ntBASIC1.49□□□□□ -2.17
BRCA1P38398 AC016831.2-201ENST00000417179 352 ntBASIC1.49□□□□□ -2.17
BRCA1P38398 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC1.49□□□□□ -2.17
BRCA1P38398 AL590365.1-201ENST00000450788 243 ntBASIC1.49□□□□□ -2.17
BRCA1P38398 HMGB1P35-201ENST00000503360 598 ntBASIC1.49□□□□□ -2.17
BRCA1P38398 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC1.49□□□□□ -2.17
BRCA1P38398 MTND2P32-201ENST00000521584 1038 ntBASIC1.49□□□□□ -2.17
BRCA1P38398 OR5AL2P-201ENST00000532185 920 ntBASIC1.49□□□□□ -2.17
BRCA1P38398 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC1.49□□□□□ -2.17
BRCA1P38398 MTND4P16-201ENST00000466108 1367 ntBASIC1.49□□□□□ -2.17
BRCA1P38398 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC1.49□□□□□ -2.17
BRCA1P38398 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC1.48□□□□□ -2.17
BRCA1P38398 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC1.48□□□□□ -2.17
BRCA1P38398 RNU4-91P-201ENST00000364778 135 ntBASIC1.48□□□□□ -2.17
BRCA1P38398 RNU6-72P-201ENST00000384285 79 ntBASIC1.48□□□□□ -2.17
BRCA1P38398 Y_RNA.480-201ENST00000384364 102 ntBASIC1.48□□□□□ -2.17
BRCA1P38398 CISD1P1-201ENST00000393907 327 ntBASIC1.48□□□□□ -2.17
BRCA1P38398 AL353621.1-201ENST00000418219 243 ntBASIC1.48□□□□□ -2.17
BRCA1P38398 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC1.48□□□□□ -2.17
BRCA1P38398 PGBD4P6-201ENST00000421501 610 ntBASIC1.48□□□□□ -2.17
BRCA1P38398 AC099063.1-201ENST00000437128 324 ntTSL 5 BASIC1.48□□□□□ -2.17
BRCA1P38398 TRBV25OR9-2-201ENST00000438417 374 ntBASIC1.48□□□□□ -2.17
BRCA1P38398 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC1.48□□□□□ -2.17
BRCA1P38398 AC010587.1-201ENST00000505809 469 ntBASIC1.48□□□□□ -2.17
BRCA1P38398 AP005639.2-201ENST00000527592 928 ntBASIC1.48□□□□□ -2.17
BRCA1P38398 AP005901.2-201ENST00000581690 525 ntTSL 3 BASIC1.48□□□□□ -2.17
BRCA1P38398 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC1.48□□□□□ -2.17
BRCA1P38398 AL359999.1-201ENST00000604513 294 ntBASIC1.48□□□□□ -2.17
BRCA1P38398 AC007363.1-201ENST00000604736 620 ntBASIC1.48□□□□□ -2.17
BRCA1P38398 MIR7844-201ENST00000616161 122 ntBASIC1.48□□□□□ -2.17
BRCA1P38398 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.48□□□□□ -2.17
BRCA1P38398 RNU6-1214P-201ENST00000363650 109 ntBASIC1.48□□□□□ -2.17
BRCA1P38398 RNU6-501P-201ENST00000364072 100 ntBASIC1.48□□□□□ -2.17
BRCA1P38398 RNU5E-7P-201ENST00000365290 117 ntBASIC1.48□□□□□ -2.17
BRCA1P38398 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC1.48□□□□□ -2.17
BRCA1P38398 RNU6-203P-201ENST00000384038 104 ntBASIC1.48□□□□□ -2.17
BRCA1P38398 RNU6-160P-201ENST00000384591 107 ntBASIC1.48□□□□□ -2.17
BRCA1P38398 U8.14-201ENST00000390843 143 ntBASIC1.48□□□□□ -2.17
BRCA1P38398 RNU6-387P-201ENST00000411331 105 ntBASIC1.48□□□□□ -2.17
BRCA1P38398 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC1.48□□□□□ -2.17
BRCA1P38398 AL365184.2-201ENST00000431139 435 ntBASIC1.48□□□□□ -2.17
BRCA1P38398 RPS15AP10-201ENST00000432472 382 ntBASIC1.48□□□□□ -2.17
BRCA1P38398 RPS24P1-201ENST00000438550 371 ntBASIC1.48□□□□□ -2.17
BRCA1P38398 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC1.48□□□□□ -2.17
BRCA1P38398 SNORD11.1-201ENST00000459482 85 ntBASIC1.48□□□□□ -2.17
BRCA1P38398 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC1.48□□□□□ -2.17
BRCA1P38398 AC079349.1-201ENST00000509096 589 ntTSL 2 BASIC1.48□□□□□ -2.17
BRCA1P38398 AC009646.1-201ENST00000510455 318 ntBASIC1.48□□□□□ -2.17
BRCA1P38398 SNORA4.4-201ENST00000515921 135 ntBASIC1.48□□□□□ -2.17
BRCA1P38398 RNA5SP436-201ENST00000516020 115 ntBASIC1.48□□□□□ -2.17
BRCA1P38398 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC1.48□□□□□ -2.17
BRCA1P38398 AC008945.2-201ENST00000606056 604 ntBASIC1.48□□□□□ -2.17
BRCA1P38398 MTND4P4-201ENST00000439033 1366 ntBASIC1.48□□□□□ -2.17
BRCA1P38398 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC1.48□□□□□ -2.17
BRCA1P38398 SNORD56.2-201ENST00000363242 71 ntBASIC1.47□□□□□ -2.17
BRCA1P38398 RNU6-944P-201ENST00000364023 107 ntBASIC1.47□□□□□ -2.17
BRCA1P38398 RNU6-997P-201ENST00000384725 107 ntBASIC1.47□□□□□ -2.17
BRCA1P38398 MIR29B2-201ENST00000385055 81 ntBASIC1.47□□□□□ -2.17
BRCA1P38398 RNU6-1176P-201ENST00000390955 107 ntBASIC1.47□□□□□ -2.17
BRCA1P38398 RNA5SP465-201ENST00000391195 109 ntBASIC1.47□□□□□ -2.17
BRCA1P38398 RPL23AP32-201ENST00000395315 459 ntBASIC1.47□□□□□ -2.17
BRCA1P38398 MIR1283-2-201ENST00000408621 87 ntBASIC1.47□□□□□ -2.17
BRCA1P38398 AC007098.1-201ENST00000420122 367 ntBASIC1.47□□□□□ -2.17
BRCA1P38398 NCOR1P3-201ENST00000420479 303 ntBASIC1.47□□□□□ -2.17
BRCA1P38398 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC1.47□□□□□ -2.17
BRCA1P38398 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC1.47□□□□□ -2.17
BRCA1P38398 PRELID3BP1-201ENST00000457142 540 ntBASIC1.47□□□□□ -2.17
BRCA1P38398 RPL30P6-201ENST00000475925 342 ntBASIC1.47□□□□□ -2.17
BRCA1P38398 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC1.47□□□□□ -2.17
BRCA1P38398 AC091965.2-201ENST00000512324 613 ntBASIC1.47□□□□□ -2.17
BRCA1P38398 RNU6-113P-201ENST00000516653 101 ntBASIC1.47□□□□□ -2.17
BRCA1P38398 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC1.47□□□□□ -2.17
BRCA1P38398 AC087276.4-201ENST00000530042 444 ntTSL 3 BASIC1.47□□□□□ -2.17
BRCA1P38398 NTS-203ENST00000551529 801 ntTSL 3 BASIC1.47□□□□□ -2.17
BRCA1P38398 IMMP1LP2-201ENST00000552954 492 ntBASIC1.47□□□□□ -2.17
BRCA1P38398 SUB1P4-201ENST00000566062 339 ntBASIC1.47□□□□□ -2.17
BRCA1P38398 BNIP3P25-201ENST00000596023 559 ntBASIC1.47□□□□□ -2.17
BRCA1P38398 AC073544.2-201ENST00000601155 540 ntBASIC1.47□□□□□ -2.17
BRCA1P38398 BNIP3P30-201ENST00000601184 574 ntBASIC1.47□□□□□ -2.17
BRCA1P38398 AL031281.1-201ENST00000604049 488 ntBASIC1.47□□□□□ -2.17
BRCA1P38398 AC108747.1-201ENST00000609508 535 ntBASIC1.47□□□□□ -2.17
BRCA1P38398 AL132822.1-201ENST00000617063 513 ntBASIC1.47□□□□□ -2.17
BRCA1P38398 AC093648.1-201ENST00000623546 606 ntBASIC1.47□□□□□ -2.17
BRCA1P38398 CD44-239ENST00000639002 528 ntTSL 1 (best) BASIC1.47□□□□□ -2.17
BRCA1P38398 snoU2_19.1-201ENST00000362361 80 ntBASIC1.46□□□□□ -2.18
BRCA1P38398 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC1.46□□□□□ -2.18
BRCA1P38398 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC1.46□□□□□ -2.18
BRCA1P38398 AL356270.1-201ENST00000456587 522 ntTSL 3 BASIC1.46□□□□□ -2.18
BRCA1P38398 AC112204.1-201ENST00000502591 103 ntBASIC1.46□□□□□ -2.18
BRCA1P38398 RNU6-311P-201ENST00000516224 102 ntBASIC1.46□□□□□ -2.18
BRCA1P38398 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC1.46□□□□□ -2.18
BRCA1P38398 MTND2P7-201ENST00000521337 640 ntBASIC1.46□□□□□ -2.18
BRCA1P38398 AC090503.1-201ENST00000548029 729 ntTSL 3 BASIC1.46□□□□□ -2.18
BRCA1P38398 AC008147.1-201ENST00000551284 325 ntTSL 3 BASIC1.46□□□□□ -2.18
BRCA1P38398 AC022254.1-201ENST00000567857 235 ntBASIC1.46□□□□□ -2.18
BRCA1P38398 AC010900.2-201ENST00000604508 210 ntBASIC1.46□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 119.8 ms