Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
HOXC9P31274 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC2.78□□□□□ -1.96
HOXC9P31274 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
HOXC9P31274 AC010889.1-201ENST00000566193 2666 ntBASIC2.78□□□□□ -1.96
HOXC9P31274 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC2.78□□□□□ -1.96
HOXC9P31274 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC2.78□□□□□ -1.96
HOXC9P31274 ZNF72P-201ENST00000425869 1908 ntBASIC2.78□□□□□ -1.96
HOXC9P31274 Y_RNA.160-201ENST00000363677 92 ntBASIC2.78□□□□□ -1.96
HOXC9P31274 Y_RNA.390-201ENST00000383932 102 ntBASIC2.78□□□□□ -1.96
HOXC9P31274 EIF4E2P1-201ENST00000393781 255 ntBASIC2.78□□□□□ -1.96
HOXC9P31274 MORN2-203ENST00000409131 544 ntTSL 5 BASIC2.78□□□□□ -1.96
HOXC9P31274 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC2.78□□□□□ -1.96
HOXC9P31274 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC2.78□□□□□ -1.96
HOXC9P31274 AC009296.1-201ENST00000443146 155 ntBASIC2.78□□□□□ -1.96
HOXC9P31274 AC007677.1-201ENST00000445757 515 ntBASIC2.78□□□□□ -1.96
HOXC9P31274 Z96811.1-201ENST00000445880 108 ntBASIC2.78□□□□□ -1.96
HOXC9P31274 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC2.78□□□□□ -1.96
HOXC9P31274 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC2.78□□□□□ -1.96
HOXC9P31274 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
HOXC9P31274 AKIRIN2P1-201ENST00000505898 352 ntBASIC2.78□□□□□ -1.96
HOXC9P31274 AC116655.1-201ENST00000508324 901 ntBASIC2.78□□□□□ -1.96
HOXC9P31274 MRPS36P2-201ENST00000512569 299 ntBASIC2.78□□□□□ -1.96
HOXC9P31274 AC069113.1-201ENST00000517763 267 ntBASIC2.78□□□□□ -1.96
HOXC9P31274 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC2.78□□□□□ -1.96
HOXC9P31274 CYCSP27-201ENST00000527643 293 ntBASIC2.78□□□□□ -1.96
HOXC9P31274 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC2.78□□□□□ -1.96
HOXC9P31274 AC005498.1-201ENST00000592125 465 ntBASIC2.78□□□□□ -1.96
HOXC9P31274 AC008739.2-201ENST00000597006 317 ntBASIC2.78□□□□□ -1.96
HOXC9P31274 AC008121.1-201ENST00000603244 268 ntBASIC2.78□□□□□ -1.96
HOXC9P31274 RNU6-85P-201ENST00000605989 107 ntBASIC2.78□□□□□ -1.96
HOXC9P31274 MIR6845-201ENST00000613182 61 ntBASIC2.78□□□□□ -1.96
HOXC9P31274 AC093913.1-201ENST00000614178 329 ntBASIC2.78□□□□□ -1.96
HOXC9P31274 AL136221.1-201ENST00000621449 509 ntBASIC2.78□□□□□ -1.96
HOXC9P31274 ANKRD20A9P-201ENST00000457997 2978 ntBASIC2.78□□□□□ -1.96
HOXC9P31274 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC2.78□□□□□ -1.97
HOXC9P31274 CDC27P3-201ENST00000635418 1910 ntBASIC2.78□□□□□ -1.97
HOXC9P31274 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC2.77□□□□□ -1.97
HOXC9P31274 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
HOXC9P31274 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC2.77□□□□□ -1.97
HOXC9P31274 DLEU2_6.3-201ENST00000340052 136 ntBASIC2.77□□□□□ -1.97
HOXC9P31274 RNU6-750P-201ENST00000390946 107 ntBASIC2.77□□□□□ -1.97
HOXC9P31274 RAP1BP3-201ENST00000407180 549 ntBASIC2.77□□□□□ -1.97
HOXC9P31274 RNU6-1148P-201ENST00000410992 104 ntBASIC2.77□□□□□ -1.97
HOXC9P31274 CYCSP49-201ENST00000420810 319 ntBASIC2.77□□□□□ -1.97
HOXC9P31274 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC2.77□□□□□ -1.97
HOXC9P31274 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC2.77□□□□□ -1.97
HOXC9P31274 AL031274.1-201ENST00000450334 232 ntBASIC2.77□□□□□ -1.97
HOXC9P31274 AP000705.1-201ENST00000454567 350 ntBASIC2.77□□□□□ -1.97
HOXC9P31274 AC116353.2-201ENST00000505332 712 ntBASIC2.77□□□□□ -1.97
HOXC9P31274 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC2.77□□□□□ -1.97
HOXC9P31274 AC113155.1-201ENST00000511141 769 ntBASIC2.77□□□□□ -1.97
HOXC9P31274 RNU6ATAC13P-201ENST00000516152 131 ntBASIC2.77□□□□□ -1.97
HOXC9P31274 RNU6-1314P-201ENST00000517139 104 ntBASIC2.77□□□□□ -1.97
HOXC9P31274 AP004607.1-201ENST00000524456 203 ntBASIC2.77□□□□□ -1.97
HOXC9P31274 AC025423.5-201ENST00000550230 219 ntBASIC2.77□□□□□ -1.97
HOXC9P31274 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC2.77□□□□□ -1.97
HOXC9P31274 MIR5692C1-201ENST00000585309 91 ntBASIC2.77□□□□□ -1.97
HOXC9P31274 Y_RNA.783-201ENST00000613546 102 ntBASIC2.77□□□□□ -1.97
HOXC9P31274 DLEU2_6.2-201ENST00000620994 136 ntBASIC2.77□□□□□ -1.97
HOXC9P31274 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC2.77□□□□□ -1.97
HOXC9P31274 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC2.77□□□□□ -1.97
HOXC9P31274 AC008669.1-201ENST00000565823 2178 ntBASIC2.77□□□□□ -1.97
HOXC9P31274 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC2.76□□□□□ -1.97
HOXC9P31274 AC002543.1-201ENST00000299783 1954 ntBASIC2.76□□□□□ -1.97
HOXC9P31274 MT-TL1-201ENST00000386347 75 ntBASIC2.76□□□□□ -1.97
HOXC9P31274 SNORA26.9-201ENST00000391322 122 ntBASIC2.76□□□□□ -1.97
HOXC9P31274 FTH1P15-201ENST00000406984 280 ntBASIC2.76□□□□□ -1.97
HOXC9P31274 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC2.76□□□□□ -1.97
HOXC9P31274 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC2.76□□□□□ -1.97
HOXC9P31274 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC2.76□□□□□ -1.97
HOXC9P31274 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC2.76□□□□□ -1.97
HOXC9P31274 RNU6-273P-201ENST00000516937 96 ntBASIC2.76□□□□□ -1.97
HOXC9P31274 ACA59.2-201ENST00000517061 156 ntBASIC2.76□□□□□ -1.97
HOXC9P31274 RNU6-548P-201ENST00000517083 115 ntBASIC2.76□□□□□ -1.97
HOXC9P31274 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
HOXC9P31274 AC018638.8-201ENST00000588755 281 ntBASIC2.76□□□□□ -1.97
HOXC9P31274 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC2.76□□□□□ -1.97
HOXC9P31274 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
HOXC9P31274 AL353997.5-201ENST00000618886 171 ntBASIC2.76□□□□□ -1.97
HOXC9P31274 Z69720.2-201ENST00000624755 279 ntBASIC2.76□□□□□ -1.97
HOXC9P31274 SCARNA4-202ENST00000625402 129 ntBASIC2.76□□□□□ -1.97
HOXC9P31274 AC138915.1-201ENST00000565427 1685 ntBASIC2.76□□□□□ -1.97
HOXC9P31274 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC2.75□□□□□ -1.97
HOXC9P31274 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.75□□□□□ -1.97
HOXC9P31274 Y_RNA.100-201ENST00000363141 102 ntBASIC2.75□□□□□ -1.97
HOXC9P31274 RNU5E-7P-201ENST00000365290 117 ntBASIC2.75□□□□□ -1.97
HOXC9P31274 DYNLT3P1-201ENST00000378574 347 ntBASIC2.75□□□□□ -1.97
HOXC9P31274 RNU6-19P-201ENST00000384718 107 ntBASIC2.75□□□□□ -1.97
HOXC9P31274 SNORD73A-201ENST00000386062 65 ntBASIC2.75□□□□□ -1.97
HOXC9P31274 PTGES3P4-201ENST00000426243 356 ntBASIC2.75□□□□□ -1.97
HOXC9P31274 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC2.75□□□□□ -1.97
HOXC9P31274 MRPL42P6-201ENST00000486397 371 ntBASIC2.75□□□□□ -1.97
HOXC9P31274 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC2.75□□□□□ -1.97
HOXC9P31274 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC2.75□□□□□ -1.97
HOXC9P31274 AC079140.5-201ENST00000507882 310 ntBASIC2.75□□□□□ -1.97
HOXC9P31274 FAM206BP-201ENST00000510179 541 ntBASIC2.75□□□□□ -1.97
HOXC9P31274 RNU6-1069P-201ENST00000516612 133 ntBASIC2.75□□□□□ -1.97
HOXC9P31274 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC2.75□□□□□ -1.97
HOXC9P31274 AC107953.1-201ENST00000522216 297 ntBASIC2.75□□□□□ -1.97
HOXC9P31274 AC007151.1-201ENST00000572774 483 ntBASIC2.75□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 108.5 ms