Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 AC073534.2-201ENST00000620377 381 ntBASIC2.14□□□□□ -2.07
PTPN4P29074 AC009831.4-201ENST00000620744 325 ntBASIC2.14□□□□□ -2.07
PTPN4P29074 AC007792.1-201ENST00000623023 402 ntBASIC2.14□□□□□ -2.07
PTPN4P29074 AC139792.3-201ENST00000623525 224 ntBASIC2.14□□□□□ -2.07
PTPN4P29074 AC124864.2-201ENST00000624736 186 ntBASIC2.14□□□□□ -2.07
PTPN4P29074 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.14□□□□□ -2.07
PTPN4P29074 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.14□□□□□ -2.07
PTPN4P29074 AC002543.1-201ENST00000299783 1954 ntBASIC2.14□□□□□ -2.07
PTPN4P29074 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC2.14□□□□□ -2.07
PTPN4P29074 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC2.13□□□□□ -2.07
PTPN4P29074 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC2.13□□□□□ -2.07
PTPN4P29074 SNORD114-1-201ENST00000362705 72 ntBASIC2.13□□□□□ -2.07
PTPN4P29074 RNA5SP160-201ENST00000364866 120 ntBASIC2.13□□□□□ -2.07
PTPN4P29074 Y_RNA.409-201ENST00000383990 98 ntBASIC2.13□□□□□ -2.07
PTPN4P29074 RNU6-517P-201ENST00000384362 110 ntBASIC2.13□□□□□ -2.07
PTPN4P29074 Y_RNA.480-201ENST00000384364 102 ntBASIC2.13□□□□□ -2.07
PTPN4P29074 SNORD116-20-201ENST00000384529 92 ntBASIC2.13□□□□□ -2.07
PTPN4P29074 RNU6-1127P-201ENST00000384580 107 ntBASIC2.13□□□□□ -2.07
PTPN4P29074 MIR95-201ENST00000385072 81 ntBASIC2.13□□□□□ -2.07
PTPN4P29074 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC2.13□□□□□ -2.07
PTPN4P29074 MTCO3P40-201ENST00000392516 676 ntBASIC2.13□□□□□ -2.07
PTPN4P29074 CALM2P3-201ENST00000400429 449 ntBASIC2.13□□□□□ -2.07
PTPN4P29074 RNU2-3P-201ENST00000410144 191 ntBASIC2.13□□□□□ -2.07
PTPN4P29074 EDDM3CP-201ENST00000415977 425 ntBASIC2.13□□□□□ -2.07
PTPN4P29074 AL606489.2-201ENST00000433886 234 ntBASIC2.13□□□□□ -2.07
PTPN4P29074 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC2.13□□□□□ -2.07
PTPN4P29074 MTND1P1-201ENST00000445453 368 ntBASIC2.13□□□□□ -2.07
PTPN4P29074 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC2.13□□□□□ -2.07
PTPN4P29074 snoU109.2-201ENST00000459316 135 ntBASIC2.13□□□□□ -2.07
PTPN4P29074 AC107032.1-201ENST00000485945 480 ntBASIC2.13□□□□□ -2.07
PTPN4P29074 SNORA40.12-201ENST00000516329 111 ntBASIC2.13□□□□□ -2.07
PTPN4P29074 SNORA43.2-201ENST00000516652 128 ntBASIC2.13□□□□□ -2.07
PTPN4P29074 SNORA48.11-201ENST00000517015 89 ntBASIC2.13□□□□□ -2.07
PTPN4P29074 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC2.13□□□□□ -2.07
PTPN4P29074 AP001893.2-201ENST00000526949 202 ntBASIC2.13□□□□□ -2.07
PTPN4P29074 AC135279.1-201ENST00000543493 504 ntBASIC2.13□□□□□ -2.07
PTPN4P29074 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC2.13□□□□□ -2.07
PTPN4P29074 AC002984.1-201ENST00000591692 448 ntBASIC2.13□□□□□ -2.07
PTPN4P29074 AC093788.1-201ENST00000609356 927 ntBASIC2.13□□□□□ -2.07
PTPN4P29074 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC2.13□□□□□ -2.07
PTPN4P29074 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC2.13□□□□□ -2.07
PTPN4P29074 HULC.1-201ENST00000612720 240 ntBASIC2.13□□□□□ -2.07
PTPN4P29074 AL359880.1-201ENST00000621879 266 ntBASIC2.13□□□□□ -2.07
PTPN4P29074 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC2.13□□□□□ -2.07
PTPN4P29074 AL354685.2-201ENST00000448218 1447 ntBASIC2.12□□□□□ -2.07
PTPN4P29074 RNU5E-7P-201ENST00000365290 117 ntBASIC2.12□□□□□ -2.07
PTPN4P29074 CYCSP33-201ENST00000414485 327 ntBASIC2.12□□□□□ -2.07
PTPN4P29074 PGBD4P6-201ENST00000421501 610 ntBASIC2.12□□□□□ -2.07
PTPN4P29074 TPTE2P5-203ENST00000458118 728 ntBASIC2.12□□□□□ -2.07
PTPN4P29074 AC090515.1-201ENST00000465295 476 ntBASIC2.12□□□□□ -2.07
PTPN4P29074 AL163973.1-201ENST00000484753 577 ntBASIC2.12□□□□□ -2.07
PTPN4P29074 RPS27P21-201ENST00000486977 252 ntBASIC2.12□□□□□ -2.07
PTPN4P29074 RNU4ATAC8P-201ENST00000516196 109 ntBASIC2.12□□□□□ -2.07
PTPN4P29074 RNA5SP364-201ENST00000516938 78 ntBASIC2.12□□□□□ -2.07
PTPN4P29074 SNORA31.25-201ENST00000517242 134 ntBASIC2.12□□□□□ -2.07
PTPN4P29074 AC109479.2-201ENST00000517842 174 ntBASIC2.12□□□□□ -2.07
PTPN4P29074 IL7-206ENST00000520269 456 ntTSL 3 BASIC2.12□□□□□ -2.07
PTPN4P29074 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC2.12□□□□□ -2.07
PTPN4P29074 AC104383.1-201ENST00000530297 370 ntBASIC2.12□□□□□ -2.07
PTPN4P29074 HIF1AP1-201ENST00000553642 175 ntBASIC2.12□□□□□ -2.07
PTPN4P29074 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC2.12□□□□□ -2.07
PTPN4P29074 AP005120.1-201ENST00000579321 352 ntTSL 3 BASIC2.12□□□□□ -2.07
PTPN4P29074 MIR3935-201ENST00000583472 104 ntBASIC2.12□□□□□ -2.07
PTPN4P29074 APOOP1-201ENST00000604695 592 ntBASIC2.12□□□□□ -2.07
PTPN4P29074 AL354950.2-201ENST00000617939 290 ntBASIC2.12□□□□□ -2.07
PTPN4P29074 MTND4P14-201ENST00000435799 1354 ntBASIC2.11□□□□□ -2.07
PTPN4P29074 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC2.11□□□□□ -2.07
PTPN4P29074 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC2.11□□□□□ -2.07
PTPN4P29074 AL596028.1-201ENST00000326971 197 ntBASIC2.11□□□□□ -2.07
PTPN4P29074 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC2.11□□□□□ -2.07
PTPN4P29074 Y_RNA.255-201ENST00000364581 97 ntBASIC2.11□□□□□ -2.07
PTPN4P29074 RNU6-1303P-201ENST00000364841 107 ntBASIC2.11□□□□□ -2.07
PTPN4P29074 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC2.11□□□□□ -2.07
PTPN4P29074 RNU6-622P-201ENST00000384272 103 ntBASIC2.11□□□□□ -2.07
PTPN4P29074 RNU6-434P-201ENST00000384376 107 ntBASIC2.11□□□□□ -2.07
PTPN4P29074 MIR186-201ENST00000384988 86 ntBASIC2.11□□□□□ -2.07
PTPN4P29074 MIR17-201ENST00000385012 84 ntBASIC2.11□□□□□ -2.07
PTPN4P29074 MIR221-201ENST00000385135 110 ntBASIC2.11□□□□□ -2.07
PTPN4P29074 SNORA40.19-201ENST00000390846 128 ntBASIC2.11□□□□□ -2.07
PTPN4P29074 SNORA16.2-201ENST00000390991 127 ntBASIC2.11□□□□□ -2.07
PTPN4P29074 SNORA48.3-201ENST00000391081 134 ntBASIC2.11□□□□□ -2.07
PTPN4P29074 RNU2-23P-201ENST00000410545 195 ntBASIC2.11□□□□□ -2.07
PTPN4P29074 RNU6-1245P-201ENST00000411130 106 ntBASIC2.11□□□□□ -2.07
PTPN4P29074 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC2.11□□□□□ -2.07
PTPN4P29074 AC074117.2-201ENST00000417130 397 ntBASIC2.11□□□□□ -2.07
PTPN4P29074 LINC01807-201ENST00000432481 676 ntTSL 3 BASIC2.11□□□□□ -2.07
PTPN4P29074 SNRPFP3-201ENST00000457792 225 ntBASIC2.11□□□□□ -2.07
PTPN4P29074 SCARNA18-201ENST00000459004 134 ntBASIC2.11□□□□□ -2.07
PTPN4P29074 RNU7-180P-201ENST00000459240 63 ntBASIC2.11□□□□□ -2.07
PTPN4P29074 AC083798.1-201ENST00000472671 131 ntBASIC2.11□□□□□ -2.07
PTPN4P29074 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC2.11□□□□□ -2.07
PTPN4P29074 RNA5SP137-201ENST00000516833 135 ntBASIC2.11□□□□□ -2.07
PTPN4P29074 RNU2-19P-201ENST00000517288 84 ntBASIC2.11□□□□□ -2.07
PTPN4P29074 HSPE1P18-201ENST00000517602 280 ntBASIC2.11□□□□□ -2.07
PTPN4P29074 BNIP3P6-201ENST00000549284 499 ntBASIC2.11□□□□□ -2.07
PTPN4P29074 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC2.11□□□□□ -2.07
PTPN4P29074 AC245505.1-201ENST00000556398 224 ntBASIC2.11□□□□□ -2.07
PTPN4P29074 AC009269.3-201ENST00000558429 472 ntTSL 5 BASIC2.11□□□□□ -2.07
PTPN4P29074 MIR5583-1-201ENST00000580941 59 ntBASIC2.11□□□□□ -2.07
PTPN4P29074 AC090897.2-201ENST00000581715 130 ntBASIC2.11□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 167.4 ms