Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 RNU6-1003P-201ENST00000517099 105 ntBASIC0.86□□□□□ -2.27
HLA-DMBP28068 RNU6-201P-201ENST00000517100 61 ntBASIC0.86□□□□□ -2.27
HLA-DMBP28068 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC0.86□□□□□ -2.27
HLA-DMBP28068 RAB11AP2-201ENST00000545905 639 ntBASIC0.86□□□□□ -2.27
HLA-DMBP28068 AC019288.1-201ENST00000557918 224 ntBASIC0.86□□□□□ -2.27
HLA-DMBP28068 AC217774.1-201ENST00000578936 517 ntTSL 4 BASIC0.86□□□□□ -2.27
HLA-DMBP28068 AL359547.2-201ENST00000615810 418 ntBASIC0.86□□□□□ -2.27
HLA-DMBP28068 U6.42-201ENST00000618440 107 ntBASIC0.86□□□□□ -2.27
HLA-DMBP28068 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC0.86□□□□□ -2.27
HLA-DMBP28068 PLD1-217ENST00000627725 174 ntTSL 5 BASIC0.86□□□□□ -2.27
HLA-DMBP28068 SNORA25.8-201ENST00000364831 128 ntBASIC0.85□□□□□ -2.27
HLA-DMBP28068 SNORA22-201ENST00000383907 134 ntBASIC0.85□□□□□ -2.27
HLA-DMBP28068 SNORA22C-201ENST00000384614 134 ntBASIC0.85□□□□□ -2.27
HLA-DMBP28068 RNU6-360P-201ENST00000390944 104 ntBASIC0.85□□□□□ -2.27
HLA-DMBP28068 AL591704.2-201ENST00000421658 181 ntBASIC0.85□□□□□ -2.27
HLA-DMBP28068 AL353777.1-201ENST00000425552 326 ntBASIC0.85□□□□□ -2.27
HLA-DMBP28068 MTND1P30-201ENST00000441241 901 ntBASIC0.85□□□□□ -2.27
HLA-DMBP28068 ICE2P2-201ENST00000483823 2787 ntBASIC0.85□□□□□ -2.27
HLA-DMBP28068 HMGN1P13-201ENST00000505795 138 ntBASIC0.85□□□□□ -2.27
HLA-DMBP28068 MTND2P33-201ENST00000506452 1031 ntBASIC0.85□□□□□ -2.27
HLA-DMBP28068 MDM2-232ENST00000544561 213 ntTSL 5 BASIC0.85□□□□□ -2.27
HLA-DMBP28068 AC123904.2-201ENST00000548059 300 ntBASIC0.85□□□□□ -2.27
HLA-DMBP28068 RPL21P5-201ENST00000554662 472 ntBASIC0.85□□□□□ -2.27
HLA-DMBP28068 NR2F2-AS1-208ENST00000560395 441 ntTSL 5 BASIC0.85□□□□□ -2.27
HLA-DMBP28068 UBE2Q2P8-201ENST00000560644 102 ntBASIC0.85□□□□□ -2.27
HLA-DMBP28068 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC0.85□□□□□ -2.27
HLA-DMBP28068 MIR4307-201ENST00000582802 84 ntBASIC0.85□□□□□ -2.27
HLA-DMBP28068 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC0.85□□□□□ -2.27
HLA-DMBP28068 MIR548AC-201ENST00000585049 88 ntBASIC0.85□□□□□ -2.27
HLA-DMBP28068 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC0.85□□□□□ -2.27
HLA-DMBP28068 RMST_7.1-201ENST00000621935 268 ntBASIC0.85□□□□□ -2.27
HLA-DMBP28068 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC0.85□□□□□ -2.27
HLA-DMBP28068 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC0.84□□□□□ -2.27
HLA-DMBP28068 MIR340-201ENST00000362125 95 ntBASIC0.84□□□□□ -2.27
HLA-DMBP28068 SNORD33-201ENST00000362761 85 ntBASIC0.84□□□□□ -2.27
HLA-DMBP28068 SNORD56.1-201ENST00000362913 68 ntBASIC0.84□□□□□ -2.27
HLA-DMBP28068 RNU5E-10P-201ENST00000363506 118 ntBASIC0.84□□□□□ -2.27
HLA-DMBP28068 Y_RNA.255-201ENST00000364581 97 ntBASIC0.84□□□□□ -2.27
HLA-DMBP28068 RPS3AP36-201ENST00000398190 775 ntBASIC0.84□□□□□ -2.27
HLA-DMBP28068 RPL22P18-201ENST00000417197 377 ntBASIC0.84□□□□□ -2.27
HLA-DMBP28068 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC0.84□□□□□ -2.27
HLA-DMBP28068 AL590556.1-201ENST00000423231 483 ntBASIC0.84□□□□□ -2.27
HLA-DMBP28068 TRIM60P10Y-201ENST00000425589 751 ntBASIC0.84□□□□□ -2.27
HLA-DMBP28068 MTND1P32-201ENST00000433043 938 ntBASIC0.84□□□□□ -2.27
HLA-DMBP28068 AL135790.2-201ENST00000437701 267 ntBASIC0.84□□□□□ -2.27
HLA-DMBP28068 RPL39P29-201ENST00000447779 157 ntBASIC0.84□□□□□ -2.27
HLA-DMBP28068 AL358075.2-201ENST00000452785 339 ntTSL 2 BASIC0.84□□□□□ -2.27
HLA-DMBP28068 COX6CP14-201ENST00000469580 174 ntBASIC0.84□□□□□ -2.27
HLA-DMBP28068 OR2A41P-201ENST00000473586 105 ntBASIC0.84□□□□□ -2.27
HLA-DMBP28068 MTCO3P9-201ENST00000506989 781 ntBASIC0.84□□□□□ -2.27
HLA-DMBP28068 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC0.84□□□□□ -2.27
HLA-DMBP28068 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC0.84□□□□□ -2.27
HLA-DMBP28068 AC107934.1-201ENST00000522215 217 ntBASIC0.84□□□□□ -2.27
HLA-DMBP28068 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC0.84□□□□□ -2.27
HLA-DMBP28068 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC0.84□□□□□ -2.27
HLA-DMBP28068 MIR5094-201ENST00000578766 85 ntBASIC0.84□□□□□ -2.27
HLA-DMBP28068 AC018889.1-201ENST00000605372 397 ntBASIC0.84□□□□□ -2.27
HLA-DMBP28068 AC080078.3-201ENST00000605407 463 ntBASIC0.84□□□□□ -2.27
HLA-DMBP28068 AL139022.2-201ENST00000606934 443 ntBASIC0.84□□□□□ -2.27
HLA-DMBP28068 AL078604.3-201ENST00000615580 211 ntBASIC0.84□□□□□ -2.27
HLA-DMBP28068 AL138955.1-201ENST00000622881 1040 ntBASIC0.84□□□□□ -2.27
HLA-DMBP28068 AC120349.3-201ENST00000624377 529 ntBASIC0.84□□□□□ -2.27
HLA-DMBP28068 OR4G3P-201ENST00000633500 913 ntBASIC0.84□□□□□ -2.27
HLA-DMBP28068 AC106858.1-201ENST00000637497 429 ntBASIC0.84□□□□□ -2.27
HLA-DMBP28068 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC0.84□□□□□ -2.28
HLA-DMBP28068 AL445523.1-201ENST00000451184 1362 ntBASIC0.83□□□□□ -2.28
HLA-DMBP28068 MIR513A1-201ENST00000385138 129 ntBASIC0.83□□□□□ -2.28
HLA-DMBP28068 MIR1276-201ENST00000408707 83 ntBASIC0.83□□□□□ -2.28
HLA-DMBP28068 RNU4-22P-201ENST00000411058 166 ntBASIC0.83□□□□□ -2.28
HLA-DMBP28068 RPL37P10-201ENST00000412884 288 ntBASIC0.83□□□□□ -2.28
HLA-DMBP28068 AL161935.2-201ENST00000414627 60 ntBASIC0.83□□□□□ -2.28
HLA-DMBP28068 AC006366.1-201ENST00000422002 759 ntBASIC0.83□□□□□ -2.28
HLA-DMBP28068 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC0.83□□□□□ -2.28
HLA-DMBP28068 AC092648.1-201ENST00000425870 423 ntBASIC0.83□□□□□ -2.28
HLA-DMBP28068 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC0.83□□□□□ -2.28
HLA-DMBP28068 FTH1P12-201ENST00000432137 551 ntBASIC0.83□□□□□ -2.28
HLA-DMBP28068 KATNBL1P3-201ENST00000443475 909 ntBASIC0.83□□□□□ -2.28
HLA-DMBP28068 USP9YP17-201ENST00000444617 696 ntBASIC0.83□□□□□ -2.28
HLA-DMBP28068 ZNF736P5Y-201ENST00000451173 805 ntBASIC0.83□□□□□ -2.28
HLA-DMBP28068 OR2AQ1P-201ENST00000451972 200 ntBASIC0.83□□□□□ -2.28
HLA-DMBP28068 ZNF736P4Y-201ENST00000454995 1243 ntBASIC0.83□□□□□ -2.28
HLA-DMBP28068 AL122001.1-201ENST00000457027 370 ntBASIC0.83□□□□□ -2.28
HLA-DMBP28068 AC087343.1-201ENST00000477341 475 ntBASIC0.83□□□□□ -2.28
HLA-DMBP28068 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC0.83□□□□□ -2.28
HLA-DMBP28068 AC079140.2-201ENST00000506193 142 ntBASIC0.83□□□□□ -2.28
HLA-DMBP28068 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC0.83□□□□□ -2.28
HLA-DMBP28068 AF131216.2-201ENST00000512316 564 ntBASIC0.83□□□□□ -2.28
HLA-DMBP28068 RNU4ATAC11P-201ENST00000515939 126 ntBASIC0.83□□□□□ -2.28
HLA-DMBP28068 RNU5F-2P-201ENST00000516066 82 ntBASIC0.83□□□□□ -2.28
HLA-DMBP28068 RNA5SP102-201ENST00000516865 106 ntBASIC0.83□□□□□ -2.28
HLA-DMBP28068 RNU6-467P-201ENST00000517027 110 ntBASIC0.83□□□□□ -2.28
HLA-DMBP28068 RNA5SP490-201ENST00000517141 136 ntBASIC0.83□□□□□ -2.28
HLA-DMBP28068 AC011979.2-201ENST00000527568 352 ntBASIC0.83□□□□□ -2.28
HLA-DMBP28068 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC0.83□□□□□ -2.28
HLA-DMBP28068 MIR4295-201ENST00000585286 85 ntBASIC0.83□□□□□ -2.28
HLA-DMBP28068 AC080013.3-201ENST00000606839 578 ntBASIC0.83□□□□□ -2.28
HLA-DMBP28068 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC0.83□□□□□ -2.28
HLA-DMBP28068 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC0.82□□□□□ -2.28
HLA-DMBP28068 RNU1-22P-201ENST00000363334 158 ntBASIC0.82□□□□□ -2.28
HLA-DMBP28068 RNY4P16-201ENST00000364768 94 ntBASIC0.82□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 84.7 ms