Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AC064836.2-201ENST00000609491 462 ntBASIC2.55□□□□□ -2
MSH3P20585 AL132765.2-201ENST00000610812 351 ntBASIC2.55□□□□□ -2
MSH3P20585 AC104985.2-201ENST00000620598 500 ntBASIC2.55□□□□□ -2
MSH3P20585 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC2.55□□□□□ -2
MSH3P20585 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC2.55□□□□□ -2
MSH3P20585 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC2.55□□□□□ -2
MSH3P20585 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC2.55□□□□□ -2
MSH3P20585 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC2.55□□□□□ -2
MSH3P20585 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC2.54□□□□□ -2
MSH3P20585 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC2.54□□□□□ -2
MSH3P20585 OFD1P6Y-202ENST00000451061 2724 ntBASIC2.54□□□□□ -2
MSH3P20585 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.54□□□□□ -2
MSH3P20585 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC2.54□□□□□ -2
MSH3P20585 DLEU2_6.3-201ENST00000340052 136 ntBASIC2.54□□□□□ -2
MSH3P20585 RNU6-78P-201ENST00000362897 107 ntBASIC2.54□□□□□ -2
MSH3P20585 SNORA25.6-201ENST00000364121 118 ntBASIC2.54□□□□□ -2
MSH3P20585 RNU6-1280P-201ENST00000365211 107 ntBASIC2.54□□□□□ -2
MSH3P20585 Y_RNA.356-201ENST00000365475 113 ntBASIC2.54□□□□□ -2
MSH3P20585 Y_RNA.474-201ENST00000384341 102 ntBASIC2.54□□□□□ -2
MSH3P20585 Y_RNA.529-201ENST00000384586 119 ntBASIC2.54□□□□□ -2
MSH3P20585 RNU6-95P-201ENST00000384697 107 ntBASIC2.54□□□□□ -2
MSH3P20585 MT-TD-201ENST00000387419 68 ntBASIC2.54□□□□□ -2
MSH3P20585 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC2.54□□□□□ -2
MSH3P20585 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC2.54□□□□□ -2
MSH3P20585 UBE2V1P4-201ENST00000425374 344 ntBASIC2.54□□□□□ -2
MSH3P20585 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC2.54□□□□□ -2
MSH3P20585 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC2.54□□□□□ -2
MSH3P20585 AL645568.3-201ENST00000433683 316 ntBASIC2.54□□□□□ -2
MSH3P20585 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC2.54□□□□□ -2
MSH3P20585 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC2.54□□□□□ -2
MSH3P20585 AC092001.1-201ENST00000453012 261 ntBASIC2.54□□□□□ -2
MSH3P20585 AC013470.1-201ENST00000453438 462 ntBASIC2.54□□□□□ -2
MSH3P20585 MRPS36P2-201ENST00000512569 299 ntBASIC2.54□□□□□ -2
MSH3P20585 SNORA43.2-201ENST00000516652 128 ntBASIC2.54□□□□□ -2
MSH3P20585 AC109479.2-201ENST00000517842 174 ntBASIC2.54□□□□□ -2
MSH3P20585 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC2.54□□□□□ -2
MSH3P20585 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC2.54□□□□□ -2
MSH3P20585 AP004607.1-201ENST00000524456 203 ntBASIC2.54□□□□□ -2
MSH3P20585 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC2.54□□□□□ -2
MSH3P20585 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC2.54□□□□□ -2
MSH3P20585 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC2.54□□□□□ -2
MSH3P20585 USP12-203ENST00000620323 349 ntTSL 3 BASIC2.54□□□□□ -2
MSH3P20585 DLEU2_6.2-201ENST00000620994 136 ntBASIC2.54□□□□□ -2
MSH3P20585 WARS-244ENST00000627608 123 ntTSL 5 BASIC2.54□□□□□ -2
MSH3P20585 U4.7-201ENST00000638126 106 ntBASIC2.54□□□□□ -2
MSH3P20585 AGL-204ENST00000370161 6923 ntTSL 5 BASIC2.54□□□□□ -2
MSH3P20585 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC2.54□□□□□ -2
MSH3P20585 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC2.53□□□□□ -2
MSH3P20585 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
MSH3P20585 RNU5E-7P-201ENST00000365290 117 ntBASIC2.53□□□□□ -2
MSH3P20585 AL078595.1-201ENST00000404458 226 ntBASIC2.53□□□□□ -2
MSH3P20585 MIR548F5-201ENST00000408421 86 ntBASIC2.53□□□□□ -2
MSH3P20585 AC074085.1-201ENST00000413598 418 ntBASIC2.53□□□□□ -2
MSH3P20585 AL117339.3-201ENST00000418733 162 ntBASIC2.53□□□□□ -2
MSH3P20585 AL590632.1-201ENST00000424289 371 ntBASIC2.53□□□□□ -2
MSH3P20585 AL358075.3-201ENST00000426289 226 ntBASIC2.53□□□□□ -2
MSH3P20585 SUMO1P4-201ENST00000429430 302 ntBASIC2.53□□□□□ -2
MSH3P20585 SNAP23P1-201ENST00000433229 246 ntBASIC2.53□□□□□ -2
MSH3P20585 RPS12P2-201ENST00000439728 269 ntBASIC2.53□□□□□ -2
MSH3P20585 AL161651.1-201ENST00000440882 223 ntBASIC2.53□□□□□ -2
MSH3P20585 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC2.53□□□□□ -2
MSH3P20585 MTND5P5-201ENST00000503764 376 ntBASIC2.53□□□□□ -2
MSH3P20585 AC096745.1-201ENST00000509945 370 ntBASIC2.53□□□□□ -2
MSH3P20585 MTND3P22-201ENST00000510932 243 ntBASIC2.53□□□□□ -2
MSH3P20585 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC2.53□□□□□ -2
MSH3P20585 RNU6-277P-201ENST00000516272 106 ntBASIC2.53□□□□□ -2
MSH3P20585 AC104576.1-201ENST00000524225 88 ntBASIC2.53□□□□□ -2
MSH3P20585 AP005639.2-201ENST00000527592 928 ntBASIC2.53□□□□□ -2
MSH3P20585 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC2.53□□□□□ -2
MSH3P20585 AL121821.2-201ENST00000556081 394 ntBASIC2.53□□□□□ -2
MSH3P20585 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC2.53□□□□□ -2
MSH3P20585 AC025281.1-201ENST00000567026 265 ntBASIC2.53□□□□□ -2
MSH3P20585 AC007151.1-201ENST00000572774 483 ntBASIC2.53□□□□□ -2
MSH3P20585 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC2.53□□□□□ -2
MSH3P20585 AL355877.2-201ENST00000603670 358 ntBASIC2.53□□□□□ -2
MSH3P20585 AC011890.2-201ENST00000613393 294 ntBASIC2.53□□□□□ -2
MSH3P20585 AC112487.2-201ENST00000637950 304 ntBASIC2.53□□□□□ -2
MSH3P20585 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC2.53□□□□□ -2
MSH3P20585 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC2.53□□□□□ -2
MSH3P20585 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
MSH3P20585 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC2.52□□□□□ -2.01
MSH3P20585 MIR6073-201ENST00000352083 89 ntBASIC2.52□□□□□ -2.01
MSH3P20585 RNU6-827P-201ENST00000365553 106 ntBASIC2.52□□□□□ -2.01
MSH3P20585 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
MSH3P20585 MIR627-201ENST00000384979 97 ntBASIC2.52□□□□□ -2.01
MSH3P20585 RNU6-750P-201ENST00000390946 107 ntBASIC2.52□□□□□ -2.01
MSH3P20585 AL445529.1-201ENST00000398713 389 ntBASIC2.52□□□□□ -2.01
MSH3P20585 FTH1P15-201ENST00000406984 280 ntBASIC2.52□□□□□ -2.01
MSH3P20585 RNU2-49P-201ENST00000410666 184 ntBASIC2.52□□□□□ -2.01
MSH3P20585 AL139396.1-201ENST00000421137 167 ntBASIC2.52□□□□□ -2.01
MSH3P20585 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
MSH3P20585 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC2.52□□□□□ -2.01
MSH3P20585 AL031274.1-201ENST00000450334 232 ntBASIC2.52□□□□□ -2.01
MSH3P20585 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC2.52□□□□□ -2.01
MSH3P20585 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
MSH3P20585 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
MSH3P20585 AC130509.1-201ENST00000464158 433 ntBASIC2.52□□□□□ -2.01
MSH3P20585 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC2.52□□□□□ -2.01
MSH3P20585 MTCYBP40-201ENST00000509390 1135 ntBASIC2.52□□□□□ -2.01
MSH3P20585 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC2.52□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 79.8 ms