Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 AL122001.1-201ENST00000457027 370 ntBASIC1.73□□□□□ -2.13
CLDN9O95484 snoU13.18-201ENST00000459483 104 ntBASIC1.73□□□□□ -2.13
CLDN9O95484 ZBTB20-AS2-201ENST00000478301 372 ntTSL 2 BASIC1.73□□□□□ -2.13
CLDN9O95484 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC1.73□□□□□ -2.13
CLDN9O95484 RPL30P1-201ENST00000488676 339 ntBASIC1.73□□□□□ -2.13
CLDN9O95484 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC1.73□□□□□ -2.13
CLDN9O95484 MTND2P33-201ENST00000506452 1031 ntBASIC1.73□□□□□ -2.13
CLDN9O95484 MRPS17P9-201ENST00000511924 393 ntBASIC1.73□□□□□ -2.13
CLDN9O95484 PTP4A1P4-201ENST00000512479 322 ntBASIC1.73□□□□□ -2.13
CLDN9O95484 AC117532.1-201ENST00000514638 323 ntBASIC1.73□□□□□ -2.13
CLDN9O95484 RNU6-1178P-201ENST00000516674 107 ntBASIC1.73□□□□□ -2.13
CLDN9O95484 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC1.73□□□□□ -2.13
CLDN9O95484 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC1.73□□□□□ -2.13
CLDN9O95484 AC024614.2-201ENST00000577584 372 ntBASIC1.73□□□□□ -2.13
CLDN9O95484 MIR3618-201ENST00000580330 88 ntBASIC1.73□□□□□ -2.13
CLDN9O95484 AL136363.2-201ENST00000604173 851 ntBASIC1.73□□□□□ -2.13
CLDN9O95484 AP001506.1-201ENST00000615444 211 ntBASIC1.73□□□□□ -2.13
CLDN9O95484 AC063943.3-201ENST00000615562 356 ntBASIC1.73□□□□□ -2.13
CLDN9O95484 AL132822.1-201ENST00000617063 513 ntBASIC1.73□□□□□ -2.13
CLDN9O95484 AC011155.2-201ENST00000623202 216 ntBASIC1.73□□□□□ -2.13
CLDN9O95484 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC1.73□□□□□ -2.13
CLDN9O95484 ANKRD20A9P-201ENST00000457997 2978 ntBASIC1.72□□□□□ -2.13
CLDN9O95484 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC1.72□□□□□ -2.13
CLDN9O95484 MIR489-201ENST00000384923 84 ntBASIC1.72□□□□□ -2.13
CLDN9O95484 MIR7-2-201ENST00000384970 110 ntBASIC1.72□□□□□ -2.13
CLDN9O95484 MT-TH-201ENST00000387441 69 ntBASIC1.72□□□□□ -2.13
CLDN9O95484 SNORA40.18-201ENST00000391200 128 ntBASIC1.72□□□□□ -2.13
CLDN9O95484 MIR1283-2-201ENST00000408621 87 ntBASIC1.72□□□□□ -2.13
CLDN9O95484 Y_RNA.597-201ENST00000410463 100 ntBASIC1.72□□□□□ -2.13
CLDN9O95484 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC1.72□□□□□ -2.13
CLDN9O95484 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC1.72□□□□□ -2.13
CLDN9O95484 C5orf58-201ENST00000421269 406 ntAPPRIS ALT2 TSL 2 BASIC1.72□□□□□ -2.13
CLDN9O95484 RPS15AP10-201ENST00000432472 382 ntBASIC1.72□□□□□ -2.13
CLDN9O95484 AC007969.2-201ENST00000441891 191 ntBASIC1.72□□□□□ -2.13
CLDN9O95484 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC1.72□□□□□ -2.13
CLDN9O95484 AP000431.2-201ENST00000450653 790 ntTSL 2 BASIC1.72□□□□□ -2.13
CLDN9O95484 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC1.72□□□□□ -2.13
CLDN9O95484 RN7SKP210-201ENST00000459176 261 ntBASIC1.72□□□□□ -2.13
CLDN9O95484 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC1.72□□□□□ -2.13
CLDN9O95484 AC120042.2-201ENST00000521556 667 ntTSL 2 BASIC1.72□□□□□ -2.13
CLDN9O95484 AP005660.1-201ENST00000522972 293 ntBASIC1.72□□□□□ -2.13
CLDN9O95484 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC1.72□□□□□ -2.13
CLDN9O95484 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC1.72□□□□□ -2.13
CLDN9O95484 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC1.72□□□□□ -2.13
CLDN9O95484 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC1.72□□□□□ -2.13
CLDN9O95484 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC1.72□□□□□ -2.13
CLDN9O95484 AL773524.1-201ENST00000614065 229 ntBASIC1.72□□□□□ -2.13
CLDN9O95484 AC091834.1-201ENST00000614543 472 ntBASIC1.72□□□□□ -2.13
CLDN9O95484 AL359314.1-201ENST00000616913 261 ntBASIC1.72□□□□□ -2.13
CLDN9O95484 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC1.72□□□□□ -2.13
CLDN9O95484 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC1.72□□□□□ -2.13
CLDN9O95484 RNU4-21P-201ENST00000362802 126 ntBASIC1.71□□□□□ -2.14
CLDN9O95484 RNU6-715P-201ENST00000365204 103 ntBASIC1.71□□□□□ -2.14
CLDN9O95484 RNU5A-2P-201ENST00000384337 116 ntBASIC1.71□□□□□ -2.14
CLDN9O95484 MIR544A-201ENST00000384855 91 ntBASIC1.71□□□□□ -2.14
CLDN9O95484 MIR454-201ENST00000390180 115 ntBASIC1.71□□□□□ -2.14
CLDN9O95484 RNU11-3P-201ENST00000391111 133 ntBASIC1.71□□□□□ -2.14
CLDN9O95484 RNA5SP465-201ENST00000391195 109 ntBASIC1.71□□□□□ -2.14
CLDN9O95484 MIR1294-201ENST00000408503 142 ntBASIC1.71□□□□□ -2.14
CLDN9O95484 MTND3P17-201ENST00000416968 344 ntBASIC1.71□□□□□ -2.14
CLDN9O95484 ATP6V0E1P3-201ENST00000420036 246 ntBASIC1.71□□□□□ -2.14
CLDN9O95484 AC244636.1-201ENST00000421152 228 ntBASIC1.71□□□□□ -2.14
CLDN9O95484 AL590556.1-201ENST00000423231 483 ntBASIC1.71□□□□□ -2.14
CLDN9O95484 MTND2P29-201ENST00000438595 412 ntBASIC1.71□□□□□ -2.14
CLDN9O95484 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC1.71□□□□□ -2.14
CLDN9O95484 AC079448.1-201ENST00000449377 373 ntBASIC1.71□□□□□ -2.14
CLDN9O95484 LINC00894-208ENST00000455777 284 ntTSL 2 BASIC1.71□□□□□ -2.14
CLDN9O95484 AC016751.1-201ENST00000458254 306 ntTSL 3 BASIC1.71□□□□□ -2.14
CLDN9O95484 RPS29P15-201ENST00000458329 171 ntBASIC1.71□□□□□ -2.14
CLDN9O95484 RPS29P11-201ENST00000496507 171 ntBASIC1.71□□□□□ -2.14
CLDN9O95484 SNORA18.6-201ENST00000516792 115 ntBASIC1.71□□□□□ -2.14
CLDN9O95484 RNA5SP503-201ENST00000517047 117 ntBASIC1.71□□□□□ -2.14
CLDN9O95484 AC060788.1-201ENST00000521318 469 ntBASIC1.71□□□□□ -2.14
CLDN9O95484 AC091996.1-201ENST00000522274 600 ntTSL 3 BASIC1.71□□□□□ -2.14
CLDN9O95484 AP001893.2-201ENST00000526949 202 ntBASIC1.71□□□□□ -2.14
CLDN9O95484 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC1.71□□□□□ -2.14
CLDN9O95484 AK6P1-201ENST00000540219 478 ntBASIC1.71□□□□□ -2.14
CLDN9O95484 AC018630.3-201ENST00000542637 96 ntBASIC1.71□□□□□ -2.14
CLDN9O95484 AL135746.1-201ENST00000554205 547 ntTSL 3 BASIC1.71□□□□□ -2.14
CLDN9O95484 Z84480.1-201ENST00000605131 311 ntBASIC1.71□□□□□ -2.14
CLDN9O95484 AC005296.1-201ENST00000616145 209 ntBASIC1.71□□□□□ -2.14
CLDN9O95484 AC023510.2-201ENST00000622162 746 ntBASIC1.71□□□□□ -2.14
CLDN9O95484 Z69720.2-201ENST00000624755 279 ntBASIC1.71□□□□□ -2.14
CLDN9O95484 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC1.71□□□□□ -2.14
CLDN9O95484 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC1.71□□□□□ -2.14
CLDN9O95484 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC1.71□□□□□ -2.14
CLDN9O95484 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC1.7□□□□□ -2.14
CLDN9O95484 Y_RNA.116-201ENST00000363292 103 ntBASIC1.7□□□□□ -2.14
CLDN9O95484 RNU6-1303P-201ENST00000364841 107 ntBASIC1.7□□□□□ -2.14
CLDN9O95484 SNORA25.9-201ENST00000365087 128 ntBASIC1.7□□□□□ -2.14
CLDN9O95484 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.7□□□□□ -2.14
CLDN9O95484 RNU6-74P-201ENST00000384235 107 ntBASIC1.7□□□□□ -2.14
CLDN9O95484 MIR1-2-201ENST00000384961 85 ntBASIC1.7□□□□□ -2.14
CLDN9O95484 MIR597-201ENST00000384968 97 ntBASIC1.7□□□□□ -2.14
CLDN9O95484 MIR9-3-201ENST00000385084 90 ntBASIC1.7□□□□□ -2.14
CLDN9O95484 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.7□□□□□ -2.14
CLDN9O95484 AC105271.1-202ENST00000411417 445 ntTSL 3 BASIC1.7□□□□□ -2.14
CLDN9O95484 SRIP3-201ENST00000413200 219 ntBASIC1.7□□□□□ -2.14
CLDN9O95484 AL162254.1-202ENST00000419604 497 ntTSL 5 BASIC1.7□□□□□ -2.14
CLDN9O95484 CYCSP49-201ENST00000420810 319 ntBASIC1.7□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 110.1 ms