Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 AP003033.1-201ENST00000527244 415 ntBASIC1.29□□□□□ -2.2
SHOX2O60902 AP003122.4-201ENST00000530980 758 ntBASIC1.29□□□□□ -2.2
SHOX2O60902 CCDC7-209ENST00000539197 581 ntAPPRIS ALT2 TSL 1 (best) BASIC1.29□□□□□ -2.2
SHOX2O60902 AC123904.2-201ENST00000548059 300 ntBASIC1.29□□□□□ -2.2
SHOX2O60902 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC1.29□□□□□ -2.2
SHOX2O60902 AC012404.2-201ENST00000558572 481 ntTSL 3 BASIC1.29□□□□□ -2.2
SHOX2O60902 AC137800.2-201ENST00000574375 120 ntBASIC1.29□□□□□ -2.2
SHOX2O60902 MIR548AC-201ENST00000585049 88 ntBASIC1.29□□□□□ -2.2
SHOX2O60902 PRKCQ-AS1-208ENST00000608453 587 ntTSL 5 BASIC1.29□□□□□ -2.2
SHOX2O60902 AC021755.4-201ENST00000616620 456 ntBASIC1.29□□□□□ -2.2
SHOX2O60902 AP000484.1-201ENST00000620067 1252 ntBASIC1.29□□□□□ -2.2
SHOX2O60902 AL445523.1-201ENST00000451184 1362 ntBASIC1.29□□□□□ -2.2
SHOX2O60902 SNORD3E-201ENST00000362899 217 ntBASIC1.28□□□□□ -2.2
SHOX2O60902 RNU6-23P-201ENST00000363283 107 ntBASIC1.28□□□□□ -2.2
SHOX2O60902 SNORA7.1-201ENST00000363750 139 ntBASIC1.28□□□□□ -2.2
SHOX2O60902 RNU6-931P-201ENST00000363850 107 ntBASIC1.28□□□□□ -2.2
SHOX2O60902 RNU1-93P-201ENST00000364704 169 ntBASIC1.28□□□□□ -2.2
SHOX2O60902 RNU6-160P-201ENST00000384591 107 ntBASIC1.28□□□□□ -2.2
SHOX2O60902 RNY1P4-201ENST00000384595 115 ntBASIC1.28□□□□□ -2.2
SHOX2O60902 RNU6-636P-201ENST00000384598 107 ntBASIC1.28□□□□□ -2.2
SHOX2O60902 RPS20P2-201ENST00000402520 389 ntBASIC1.28□□□□□ -2.2
SHOX2O60902 MIR1285-1-201ENST00000408593 84 ntBASIC1.28□□□□□ -2.2
SHOX2O60902 RNA5SP100-201ENST00000410903 110 ntBASIC1.28□□□□□ -2.2
SHOX2O60902 RNA5SP59-201ENST00000410922 110 ntBASIC1.28□□□□□ -2.2
SHOX2O60902 NCOR1P3-201ENST00000420479 303 ntBASIC1.28□□□□□ -2.2
SHOX2O60902 LINC01427-201ENST00000420928 504 ntTSL 3 BASIC1.28□□□□□ -2.2
SHOX2O60902 RPS15AP10-201ENST00000432472 382 ntBASIC1.28□□□□□ -2.2
SHOX2O60902 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC1.28□□□□□ -2.2
SHOX2O60902 AC244505.5-201ENST00000443639 207 ntBASIC1.28□□□□□ -2.2
SHOX2O60902 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC1.28□□□□□ -2.2
SHOX2O60902 RPL30P6-201ENST00000475925 342 ntBASIC1.28□□□□□ -2.2
SHOX2O60902 AF131216.2-201ENST00000512316 564 ntBASIC1.28□□□□□ -2.2
SHOX2O60902 FABP5P5-201ENST00000515537 406 ntBASIC1.28□□□□□ -2.2
SHOX2O60902 5S_rRNA.3-201ENST00000517021 110 ntBASIC1.28□□□□□ -2.2
SHOX2O60902 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC1.28□□□□□ -2.2
SHOX2O60902 AC026904.2-201ENST00000521359 537 ntTSL 3 BASIC1.28□□□□□ -2.2
SHOX2O60902 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC1.28□□□□□ -2.2
SHOX2O60902 MIR4422-201ENST00000581938 83 ntBASIC1.28□□□□□ -2.2
SHOX2O60902 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC1.28□□□□□ -2.2
SHOX2O60902 5S_rRNA.19-201ENST00000612131 110 ntBASIC1.28□□□□□ -2.2
SHOX2O60902 MIR8074-201ENST00000615081 81 ntBASIC1.28□□□□□ -2.2
SHOX2O60902 5S_rRNA.18-201ENST00000621941 110 ntBASIC1.28□□□□□ -2.2
SHOX2O60902 AC073343.1-201ENST00000328239 651 ntBASIC1.27□□□□□ -2.21
SHOX2O60902 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.27□□□□□ -2.21
SHOX2O60902 RNU6-757P-201ENST00000410334 100 ntBASIC1.27□□□□□ -2.21
SHOX2O60902 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC1.27□□□□□ -2.21
SHOX2O60902 AC095032.2-201ENST00000414923 418 ntTSL 2 BASIC1.27□□□□□ -2.21
SHOX2O60902 MTCYBP5-201ENST00000423752 1135 ntBASIC1.27□□□□□ -2.21
SHOX2O60902 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC1.27□□□□□ -2.21
SHOX2O60902 AL353752.1-201ENST00000454946 260 ntBASIC1.27□□□□□ -2.21
SHOX2O60902 snoU109.3-201ENST00000459477 145 ntBASIC1.27□□□□□ -2.21
SHOX2O60902 RPL30P1-201ENST00000488676 339 ntBASIC1.27□□□□□ -2.21
SHOX2O60902 AC134050.1-201ENST00000495088 933 ntBASIC1.27□□□□□ -2.21
SHOX2O60902 AC025465.3-201ENST00000510570 311 ntBASIC1.27□□□□□ -2.21
SHOX2O60902 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC1.27□□□□□ -2.21
SHOX2O60902 CARD18-203ENST00000532895 422 ntTSL 2 BASIC1.27□□□□□ -2.21
SHOX2O60902 DLGAP1-AS4-201ENST00000582054 757 ntTSL 5 BASIC1.27□□□□□ -2.21
SHOX2O60902 AC022022.2-201ENST00000602989 360 ntBASIC1.27□□□□□ -2.21
SHOX2O60902 AP001485.1-201ENST00000604799 199 ntBASIC1.27□□□□□ -2.21
SHOX2O60902 PRR13P7-201ENST00000605538 430 ntBASIC1.27□□□□□ -2.21
SHOX2O60902 AL159153.1-201ENST00000619688 317 ntBASIC1.27□□□□□ -2.21
SHOX2O60902 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC1.27□□□□□ -2.21
SHOX2O60902 AC103706.2-201ENST00000638080 240 ntBASIC1.27□□□□□ -2.21
SHOX2O60902 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.27□□□□□ -2.21
SHOX2O60902 TLR6-205ENST00000610323 1443 ntTSL 5 BASIC1.26□□□□□ -2.21
SHOX2O60902 RNU6-743P-201ENST00000364151 106 ntBASIC1.26□□□□□ -2.21
SHOX2O60902 RNY4P16-201ENST00000364768 94 ntBASIC1.26□□□□□ -2.21
SHOX2O60902 Y_RNA.471-201ENST00000384312 102 ntBASIC1.26□□□□□ -2.21
SHOX2O60902 Y_RNA.597-201ENST00000410463 100 ntBASIC1.26□□□□□ -2.21
SHOX2O60902 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC1.26□□□□□ -2.21
SHOX2O60902 BTF3L4P1-201ENST00000413813 468 ntBASIC1.26□□□□□ -2.21
SHOX2O60902 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC1.26□□□□□ -2.21
SHOX2O60902 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC1.26□□□□□ -2.21
SHOX2O60902 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC1.26□□□□□ -2.21
SHOX2O60902 AC104653.2-201ENST00000435407 416 ntTSL 3 BASIC1.26□□□□□ -2.21
SHOX2O60902 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC1.26□□□□□ -2.21
SHOX2O60902 MTND2P33-201ENST00000506452 1031 ntBASIC1.26□□□□□ -2.21
SHOX2O60902 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC1.26□□□□□ -2.21
SHOX2O60902 Y_RNA.687-201ENST00000516558 91 ntBASIC1.26□□□□□ -2.21
SHOX2O60902 SNORA43.2-201ENST00000516652 128 ntBASIC1.26□□□□□ -2.21
SHOX2O60902 AC036111.3-201ENST00000526389 112 ntBASIC1.26□□□□□ -2.21
SHOX2O60902 RRN3P3-201ENST00000549207 578 ntBASIC1.26□□□□□ -2.21
SHOX2O60902 AL157955.1-201ENST00000554433 331 ntTSL 3 BASIC1.26□□□□□ -2.21
SHOX2O60902 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC1.26□□□□□ -2.21
SHOX2O60902 AC008015.1-201ENST00000555505 465 ntBASIC1.26□□□□□ -2.21
SHOX2O60902 AC009269.3-201ENST00000558429 472 ntTSL 5 BASIC1.26□□□□□ -2.21
SHOX2O60902 LINC01893-201ENST00000581750 479 ntTSL 3 BASIC1.26□□□□□ -2.21
SHOX2O60902 AL136363.2-201ENST00000604173 851 ntBASIC1.26□□□□□ -2.21
SHOX2O60902 AC130454.1-201ENST00000622948 401 ntBASIC1.26□□□□□ -2.21
SHOX2O60902 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC1.26□□□□□ -2.21
SHOX2O60902 AC008993.2-201ENST00000631744 806 ntBASIC1.26□□□□□ -2.21
SHOX2O60902 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC1.26□□□□□ -2.21
SHOX2O60902 MTND4P16-201ENST00000466108 1367 ntBASIC1.25□□□□□ -2.21
SHOX2O60902 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.25□□□□□ -2.21
SHOX2O60902 snoU2_19.1-201ENST00000362361 80 ntBASIC1.25□□□□□ -2.21
SHOX2O60902 Y_RNA.67-201ENST00000362870 100 ntBASIC1.25□□□□□ -2.21
SHOX2O60902 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.25□□□□□ -2.21
SHOX2O60902 RNU1-78P-201ENST00000391248 165 ntBASIC1.25□□□□□ -2.21
SHOX2O60902 RAP1BP3-201ENST00000407180 549 ntBASIC1.25□□□□□ -2.21
SHOX2O60902 AL357139.1-201ENST00000407792 426 ntBASIC1.25□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 101.1 ms