Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC-0.18□□□□□ -2.44
CCDC88BA6NC98 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC-0.18□□□□□ -2.44
CCDC88BA6NC98 MIR103A1-201ENST00000362165 78 ntBASIC-0.18□□□□□ -2.44
CCDC88BA6NC98 RNA5SP264-201ENST00000363115 107 ntBASIC-0.18□□□□□ -2.44
CCDC88BA6NC98 Y_RNA.571-201ENST00000384753 98 ntBASIC-0.18□□□□□ -2.44
CCDC88BA6NC98 SNORD12-201ENST00000391002 90 ntBASIC-0.18□□□□□ -2.44
CCDC88BA6NC98 INTS6L-AS1-201ENST00000430820 398 ntTSL 3 BASIC-0.18□□□□□ -2.44
CCDC88BA6NC98 AL392003.1-201ENST00000434394 243 ntBASIC-0.18□□□□□ -2.44
CCDC88BA6NC98 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC-0.18□□□□□ -2.44
CCDC88BA6NC98 RAD1P2-201ENST00000446414 663 ntBASIC-0.18□□□□□ -2.44
CCDC88BA6NC98 COX7A2P2-201ENST00000505291 250 ntBASIC-0.18□□□□□ -2.44
CCDC88BA6NC98 AKIRIN2P1-201ENST00000505898 352 ntBASIC-0.18□□□□□ -2.44
CCDC88BA6NC98 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC-0.18□□□□□ -2.44
CCDC88BA6NC98 SNORD79.1-201ENST00000516069 84 ntBASIC-0.18□□□□□ -2.44
CCDC88BA6NC98 AC104417.1-201ENST00000523974 751 ntBASIC-0.18□□□□□ -2.44
CCDC88BA6NC98 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC-0.18□□□□□ -2.44
CCDC88BA6NC98 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC-0.18□□□□□ -2.44
CCDC88BA6NC98 EIF1P4-201ENST00000572664 335 ntBASIC-0.18□□□□□ -2.44
CCDC88BA6NC98 AC005951.2-201ENST00000576282 495 ntBASIC-0.18□□□□□ -2.44
CCDC88BA6NC98 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC-0.18□□□□□ -2.44
CCDC88BA6NC98 AC092354.1-201ENST00000606057 376 ntBASIC-0.18□□□□□ -2.44
CCDC88BA6NC98 AC018926.1-201ENST00000616335 435 ntBASIC-0.18□□□□□ -2.44
CCDC88BA6NC98 SMIM18-202ENST00000626298 114 ntTSL 5 BASIC-0.18□□□□□ -2.44
CCDC88BA6NC98 MTND2P4-201ENST00000445034 1004 ntBASIC-0.19□□□□□ -2.44
CCDC88BA6NC98 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC-0.19□□□□□ -2.44
CCDC88BA6NC98 AC010587.2-201ENST00000511727 448 ntBASIC-0.19□□□□□ -2.44
CCDC88BA6NC98 AC093027.1-201ENST00000546698 429 ntBASIC-0.19□□□□□ -2.44
CCDC88BA6NC98 AC012065.4-201ENST00000602445 679 ntBASIC-0.19□□□□□ -2.44
CCDC88BA6NC98 AC107304.1-201ENST00000604229 296 ntBASIC-0.19□□□□□ -2.44
CCDC88BA6NC98 AL590240.4-201ENST00000616908 390 ntBASIC-0.19□□□□□ -2.44
CCDC88BA6NC98 AC009269.6-201ENST00000621778 588 ntBASIC-0.19□□□□□ -2.44
CCDC88BA6NC98 AC080188.3-201ENST00000624842 748 ntBASIC-0.19□□□□□ -2.44
CCDC88BA6NC98 Y_RNA.99-201ENST00000363138 105 ntBASIC-0.2□□□□□ -2.44
CCDC88BA6NC98 RNU6-1335P-201ENST00000365426 107 ntBASIC-0.2□□□□□ -2.44
CCDC88BA6NC98 RNA5SP259-201ENST00000365541 109 ntBASIC-0.2□□□□□ -2.44
CCDC88BA6NC98 RNU6-160P-201ENST00000384591 107 ntBASIC-0.2□□□□□ -2.44
CCDC88BA6NC98 MRPL30-202ENST00000409145 562 ntTSL 2 BASIC-0.2□□□□□ -2.44
CCDC88BA6NC98 BRK1P2-201ENST00000442875 223 ntBASIC-0.2□□□□□ -2.44
CCDC88BA6NC98 MTND1P3-201ENST00000484956 952 ntBASIC-0.2□□□□□ -2.44
CCDC88BA6NC98 AC131211.1-201ENST00000497285 483 ntTSL 5 BASIC-0.2□□□□□ -2.44
CCDC88BA6NC98 SUMO1P1-201ENST00000497904 306 ntBASIC-0.2□□□□□ -2.44
CCDC88BA6NC98 SUMO2P16-201ENST00000519475 264 ntBASIC-0.2□□□□□ -2.44
CCDC88BA6NC98 ZNF705CP-201ENST00000530515 889 ntBASIC-0.2□□□□□ -2.44
CCDC88BA6NC98 AC079416.3-201ENST00000624479 549 ntBASIC-0.2□□□□□ -2.44
CCDC88BA6NC98 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC-0.2□□□□□ -2.44
CCDC88BA6NC98 RNU6V-201ENST00000384105 107 ntBASIC-0.21□□□□□ -2.44
CCDC88BA6NC98 MIR520A-201ENST00000384862 85 ntBASIC-0.21□□□□□ -2.44
CCDC88BA6NC98 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC-0.21□□□□□ -2.44
CCDC88BA6NC98 AC068135.1-201ENST00000446164 246 ntBASIC-0.21□□□□□ -2.44
CCDC88BA6NC98 AC025947.1-201ENST00000447943 299 ntTSL 5 BASIC-0.21□□□□□ -2.44
CCDC88BA6NC98 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC-0.21□□□□□ -2.44
CCDC88BA6NC98 MTCO2P15-201ENST00000532655 656 ntBASIC-0.21□□□□□ -2.44
CCDC88BA6NC98 AC005695.2-201ENST00000579641 259 ntTSL 3 BASIC-0.21□□□□□ -2.44
CCDC88BA6NC98 uc_338.6-201ENST00000613544 171 ntBASIC-0.21□□□□□ -2.44
CCDC88BA6NC98 MIR194-1-201ENST00000384892 85 ntBASIC-0.22□□□□□ -2.44
CCDC88BA6NC98 RNA5SP222-201ENST00000411039 105 ntBASIC-0.22□□□□□ -2.44
CCDC88BA6NC98 AL512658.1-201ENST00000449072 533 ntTSL 3 BASIC-0.22□□□□□ -2.44
CCDC88BA6NC98 NDUFB4P10-201ENST00000452541 359 ntBASIC-0.22□□□□□ -2.44
CCDC88BA6NC98 MTCYBP43-201ENST00000513621 740 ntBASIC-0.22□□□□□ -2.44
CCDC88BA6NC98 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC-0.22□□□□□ -2.44
CCDC88BA6NC98 AC010261.1-201ENST00000514411 457 ntTSL 5 BASIC-0.22□□□□□ -2.44
CCDC88BA6NC98 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC-0.22□□□□□ -2.44
CCDC88BA6NC98 HIGD1AP6-201ENST00000521833 279 ntBASIC-0.22□□□□□ -2.44
CCDC88BA6NC98 AC004217.3-201ENST00000551552 878 ntBASIC-0.22□□□□□ -2.44
CCDC88BA6NC98 SUMO2P14-201ENST00000604488 293 ntBASIC-0.22□□□□□ -2.44
CCDC88BA6NC98 AL356157.2-201ENST00000605122 111 ntBASIC-0.22□□□□□ -2.44
CCDC88BA6NC98 AC100812.1-201ENST00000607622 580 ntBASIC-0.22□□□□□ -2.44
CCDC88BA6NC98 AC034229.4-201ENST00000607861 441 ntBASIC-0.22□□□□□ -2.44
CCDC88BA6NC98 AC100810.6-201ENST00000638068 285 ntBASIC-0.22□□□□□ -2.44
CCDC88BA6NC98 RNA5SP214-201ENST00000363378 118 ntBASIC-0.22□□□□□ -2.45
CCDC88BA6NC98 RNU6-833P-201ENST00000363486 107 ntBASIC-0.22□□□□□ -2.45
CCDC88BA6NC98 RNU6-969P-201ENST00000383900 105 ntBASIC-0.22□□□□□ -2.45
CCDC88BA6NC98 RNU6-152P-201ENST00000384037 107 ntBASIC-0.22□□□□□ -2.45
CCDC88BA6NC98 RNU6-514P-201ENST00000384208 107 ntBASIC-0.22□□□□□ -2.45
CCDC88BA6NC98 Y_RNA.488-201ENST00000384403 102 ntBASIC-0.22□□□□□ -2.45
CCDC88BA6NC98 PCDH9-AS3-201ENST00000434073 479 ntTSL 2 BASIC-0.22□□□□□ -2.45
CCDC88BA6NC98 AC092001.1-201ENST00000453012 261 ntBASIC-0.22□□□□□ -2.45
CCDC88BA6NC98 AL160314.1-201ENST00000490836 438 ntBASIC-0.22□□□□□ -2.45
CCDC88BA6NC98 MTCYBP40-201ENST00000509390 1135 ntBASIC-0.22□□□□□ -2.45
CCDC88BA6NC98 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC-0.22□□□□□ -2.45
CCDC88BA6NC98 RNA5SP227-201ENST00000516184 113 ntBASIC-0.22□□□□□ -2.45
CCDC88BA6NC98 AP000756.1-201ENST00000532606 679 ntTSL 2 BASIC-0.22□□□□□ -2.45
CCDC88BA6NC98 MTND5P16-201ENST00000460269 1703 ntBASIC-0.23□□□□□ -2.45
CCDC88BA6NC98 ZNF849P-201ENST00000594711 1566 ntBASIC-0.23□□□□□ -2.45
CCDC88BA6NC98 BX664727.1-201ENST00000416024 466 ntBASIC-0.23□□□□□ -2.45
CCDC88BA6NC98 AC113331.1-201ENST00000428160 869 ntTSL 2 BASIC-0.23□□□□□ -2.45
CCDC88BA6NC98 DAP3P1-201ENST00000441522 278 ntBASIC-0.23□□□□□ -2.45
CCDC88BA6NC98 AC016717.1-201ENST00000448918 286 ntBASIC-0.23□□□□□ -2.45
CCDC88BA6NC98 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC-0.23□□□□□ -2.45
CCDC88BA6NC98 CECR9-201ENST00000453421 199 ntBASIC-0.23□□□□□ -2.45
CCDC88BA6NC98 HMGN1P12-201ENST00000499125 195 ntBASIC-0.23□□□□□ -2.45
CCDC88BA6NC98 AC090857.2-201ENST00000526362 723 ntTSL 2 BASIC-0.23□□□□□ -2.45
CCDC88BA6NC98 AL356057.1-201ENST00000533798 831 ntBASIC-0.23□□□□□ -2.45
CCDC88BA6NC98 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC-0.23□□□□□ -2.45
CCDC88BA6NC98 AL590229.1-201ENST00000603497 542 ntBASIC-0.23□□□□□ -2.45
CCDC88BA6NC98 BNIP3P31-201ENST00000604515 566 ntBASIC-0.23□□□□□ -2.45
CCDC88BA6NC98 AC098614.4-201ENST00000607601 462 ntBASIC-0.23□□□□□ -2.45
CCDC88BA6NC98 AC239868.4-201ENST00000608318 671 ntBASIC-0.23□□□□□ -2.45
CCDC88BA6NC98 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC-0.23□□□□□ -2.45
CCDC88BA6NC98 AC104820.1-201ENST00000624183 307 ntBASIC-0.23□□□□□ -2.45
Retrieved 100 of 98,524 protein–RNA pairs in 169.4 ms