Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC3.98□□□□□ -1.77
HIF3AQ9Y2N7 KCNJ1-202ENST00000324036 2614 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
HIF3AQ9Y2N7 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC3.98□□□□□ -1.77
HIF3AQ9Y2N7 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
HIF3AQ9Y2N7 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC3.98□□□□□ -1.77
HIF3AQ9Y2N7 AC073073.2-201ENST00000609827 2578 ntBASIC3.98□□□□□ -1.77
HIF3AQ9Y2N7 AP001486.2-201ENST00000561652 5113 ntBASIC3.98□□□□□ -1.77
HIF3AQ9Y2N7 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
HIF3AQ9Y2N7 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
HIF3AQ9Y2N7 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC3.97□□□□□ -1.77
HIF3AQ9Y2N7 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC3.97□□□□□ -1.77
HIF3AQ9Y2N7 SLC10A2-201ENST00000245312 3779 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
HIF3AQ9Y2N7 ZNF705D-202ENST00000400085 3377 ntAPPRIS P1 TSL 5 BASIC3.97□□□□□ -1.77
HIF3AQ9Y2N7 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC3.97□□□□□ -1.77
HIF3AQ9Y2N7 RNU1-15P-201ENST00000353977 144 ntBASIC3.97□□□□□ -1.77
HIF3AQ9Y2N7 SNORA63.4-201ENST00000362763 126 ntBASIC3.97□□□□□ -1.77
HIF3AQ9Y2N7 RNU5F-3P-201ENST00000363767 117 ntBASIC3.97□□□□□ -1.77
HIF3AQ9Y2N7 RNU6-324P-201ENST00000363957 106 ntBASIC3.97□□□□□ -1.77
HIF3AQ9Y2N7 Y_RNA.420-201ENST00000384043 110 ntBASIC3.97□□□□□ -1.77
HIF3AQ9Y2N7 RPL21P17-201ENST00000397467 475 ntBASIC3.97□□□□□ -1.77
HIF3AQ9Y2N7 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC3.97□□□□□ -1.77
HIF3AQ9Y2N7 AL354726.1-201ENST00000411981 402 ntTSL 2 BASIC3.97□□□□□ -1.77
HIF3AQ9Y2N7 ELOCP21-201ENST00000412558 336 ntBASIC3.97□□□□□ -1.77
HIF3AQ9Y2N7 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC3.97□□□□□ -1.77
HIF3AQ9Y2N7 AC105940.1-201ENST00000434265 353 ntTSL 3 BASIC3.97□□□□□ -1.77
HIF3AQ9Y2N7 TBCAP1-201ENST00000436520 327 ntBASIC3.97□□□□□ -1.77
HIF3AQ9Y2N7 AC244670.1-201ENST00000436879 112 ntBASIC3.97□□□□□ -1.77
HIF3AQ9Y2N7 AC012308.1-201ENST00000451232 178 ntBASIC3.97□□□□□ -1.77
HIF3AQ9Y2N7 RPL30P12-201ENST00000474666 353 ntBASIC3.97□□□□□ -1.77
HIF3AQ9Y2N7 AC091179.3-201ENST00000474761 144 ntBASIC3.97□□□□□ -1.77
HIF3AQ9Y2N7 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC3.97□□□□□ -1.77
HIF3AQ9Y2N7 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
HIF3AQ9Y2N7 PPBPP1-201ENST00000510807 373 ntBASIC3.97□□□□□ -1.77
HIF3AQ9Y2N7 AC022616.8-201ENST00000533569 253 ntBASIC3.97□□□□□ -1.77
HIF3AQ9Y2N7 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
HIF3AQ9Y2N7 RN7SL176P-201ENST00000580352 264 ntBASIC3.97□□□□□ -1.77
HIF3AQ9Y2N7 MIR4270-201ENST00000581799 70 ntBASIC3.97□□□□□ -1.77
HIF3AQ9Y2N7 AC069294.1-201ENST00000608397 350 ntBASIC3.97□□□□□ -1.77
HIF3AQ9Y2N7 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC3.97□□□□□ -1.77
HIF3AQ9Y2N7 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC3.97□□□□□ -1.77
HIF3AQ9Y2N7 AC091953.3-201ENST00000623220 236 ntBASIC3.97□□□□□ -1.77
HIF3AQ9Y2N7 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC3.97□□□□□ -1.77
HIF3AQ9Y2N7 PARP8-201ENST00000281631 7177 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
HIF3AQ9Y2N7 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC3.97□□□□□ -1.77
HIF3AQ9Y2N7 ENOX2-202ENST00000370927 3788 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
HIF3AQ9Y2N7 PLAG1-201ENST00000316981 7322 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
HIF3AQ9Y2N7 AC007656.2-201ENST00000624902 4547 ntBASIC3.96□□□□□ -1.78
HIF3AQ9Y2N7 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC3.96□□□□□ -1.78
HIF3AQ9Y2N7 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC3.96□□□□□ -1.78
HIF3AQ9Y2N7 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC3.96□□□□□ -1.78
HIF3AQ9Y2N7 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC3.96□□□□□ -1.78
HIF3AQ9Y2N7 RNA5SP502-201ENST00000362694 119 ntBASIC3.96□□□□□ -1.78
HIF3AQ9Y2N7 Y_RNA.542-201ENST00000384641 111 ntBASIC3.96□□□□□ -1.78
HIF3AQ9Y2N7 MIR3065-201ENST00000390137 79 ntBASIC3.96□□□□□ -1.78
HIF3AQ9Y2N7 MIR1911-201ENST00000410783 80 ntBASIC3.96□□□□□ -1.78
HIF3AQ9Y2N7 RN7SKP53-201ENST00000411337 315 ntBASIC3.96□□□□□ -1.78
HIF3AQ9Y2N7 RPS26P42-201ENST00000413485 326 ntBASIC3.96□□□□□ -1.78
HIF3AQ9Y2N7 EBAG9P1-201ENST00000418955 543 ntBASIC3.96□□□□□ -1.78
HIF3AQ9Y2N7 HMGN2P10-201ENST00000448085 265 ntBASIC3.96□□□□□ -1.78
HIF3AQ9Y2N7 ABCF2P2-201ENST00000450549 296 ntBASIC3.96□□□□□ -1.78
HIF3AQ9Y2N7 RPL26P9-201ENST00000457466 433 ntBASIC3.96□□□□□ -1.78
HIF3AQ9Y2N7 AC084357.1-201ENST00000473404 255 ntBASIC3.96□□□□□ -1.78
HIF3AQ9Y2N7 RN7SL812P-201ENST00000493791 279 ntBASIC3.96□□□□□ -1.78
HIF3AQ9Y2N7 RPS27P26-201ENST00000494583 239 ntBASIC3.96□□□□□ -1.78
HIF3AQ9Y2N7 AC011396.2-202ENST00000511390 375 ntTSL 3 BASIC3.96□□□□□ -1.78
HIF3AQ9Y2N7 AC073429.1-201ENST00000511749 503 ntTSL 3 BASIC3.96□□□□□ -1.78
HIF3AQ9Y2N7 AC107027.2-201ENST00000512197 115 ntBASIC3.96□□□□□ -1.78
HIF3AQ9Y2N7 RNU7-121P-201ENST00000516604 62 ntBASIC3.96□□□□□ -1.78
HIF3AQ9Y2N7 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC3.96□□□□□ -1.78
HIF3AQ9Y2N7 MIR4431-201ENST00000579990 94 ntBASIC3.96□□□□□ -1.78
HIF3AQ9Y2N7 DNAJC19P2-201ENST00000593340 302 ntBASIC3.96□□□□□ -1.78
HIF3AQ9Y2N7 MIR6780A-201ENST00000615089 68 ntBASIC3.96□□□□□ -1.78
HIF3AQ9Y2N7 AL034408.1-202ENST00000636088 415 ntBASIC3.96□□□□□ -1.78
HIF3AQ9Y2N7 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC3.96□□□□□ -1.78
HIF3AQ9Y2N7 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
HIF3AQ9Y2N7 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.96□□□□□ -1.78
HIF3AQ9Y2N7 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC3.96□□□□□ -1.78
HIF3AQ9Y2N7 C9orf72-203ENST00000380003 3200 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
HIF3AQ9Y2N7 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC3.96□□□□□ -1.78
HIF3AQ9Y2N7 RAP1GDS1-205ENST00000408927 3681 ntAPPRIS P3 TSL 2 BASIC3.96□□□□□ -1.78
HIF3AQ9Y2N7 NCK1-204ENST00000469404 2403 ntTSL 2 BASIC3.95□□□□□ -1.78
HIF3AQ9Y2N7 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC3.95□□□□□ -1.78
HIF3AQ9Y2N7 RNU6-199P-201ENST00000362954 107 ntBASIC3.95□□□□□ -1.78
HIF3AQ9Y2N7 snoU2_19.4-201ENST00000364329 80 ntBASIC3.95□□□□□ -1.78
HIF3AQ9Y2N7 RNU6-578P-201ENST00000390980 103 ntBASIC3.95□□□□□ -1.78
HIF3AQ9Y2N7 RNA5SP390-201ENST00000410191 113 ntBASIC3.95□□□□□ -1.78
HIF3AQ9Y2N7 RNU2-54P-201ENST00000410299 190 ntBASIC3.95□□□□□ -1.78
HIF3AQ9Y2N7 AC009963.1-201ENST00000417265 157 ntBASIC3.95□□□□□ -1.78
HIF3AQ9Y2N7 AC004875.1-201ENST00000432702 378 ntTSL 3 BASIC3.95□□□□□ -1.78
HIF3AQ9Y2N7 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC3.95□□□□□ -1.78
HIF3AQ9Y2N7 AC091179.1-201ENST00000461606 579 ntBASIC3.95□□□□□ -1.78
HIF3AQ9Y2N7 AC006463.2-201ENST00000473326 348 ntBASIC3.95□□□□□ -1.78
HIF3AQ9Y2N7 RPS4XP13-201ENST00000483219 789 ntBASIC3.95□□□□□ -1.78
HIF3AQ9Y2N7 VWA8P1-201ENST00000510889 176 ntBASIC3.95□□□□□ -1.78
HIF3AQ9Y2N7 AC006499.6-201ENST00000511169 607 ntBASIC3.95□□□□□ -1.78
HIF3AQ9Y2N7 RNU6-581P-201ENST00000516214 105 ntBASIC3.95□□□□□ -1.78
HIF3AQ9Y2N7 RN7SKP289-201ENST00000517244 295 ntBASIC3.95□□□□□ -1.78
HIF3AQ9Y2N7 AC134698.5-201ENST00000519444 336 ntBASIC3.95□□□□□ -1.78
HIF3AQ9Y2N7 CYCSP23-201ENST00000519781 313 ntBASIC3.95□□□□□ -1.78
HIF3AQ9Y2N7 AC064807.2-201ENST00000521188 672 ntTSL 3 BASIC3.95□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 113.5 ms