Protein–RNA interactions for Protein: Q9ULD4

BRPF3, Bromodomain and PHD finger-containing protein 3, humanhuman

Predictions only

Length 1,205 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRPF3Q9ULD4 AC006445.2-201ENST00000510061 472 ntBASIC4.54□□□□□ -1.68
BRPF3Q9ULD4 Y_RNA.673-201ENST00000516306 88 ntBASIC4.54□□□□□ -1.68
BRPF3Q9ULD4 RNU4ATAC15P-201ENST00000516415 126 ntBASIC4.54□□□□□ -1.68
BRPF3Q9ULD4 SCARNA14-201ENST00000516903 136 ntBASIC4.54□□□□□ -1.68
BRPF3Q9ULD4 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC4.54□□□□□ -1.68
BRPF3Q9ULD4 CR383656.8-201ENST00000549046 145 ntBASIC4.54□□□□□ -1.68
BRPF3Q9ULD4 HIGD1AP1-201ENST00000550979 275 ntBASIC4.54□□□□□ -1.68
BRPF3Q9ULD4 AC012433.1-201ENST00000588916 398 ntBASIC4.54□□□□□ -1.68
BRPF3Q9ULD4 AC091903.1-201ENST00000624322 454 ntBASIC4.54□□□□□ -1.68
BRPF3Q9ULD4 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC4.53□□□□□ -1.68
BRPF3Q9ULD4 RNU6-858P-201ENST00000362436 107 ntBASIC4.53□□□□□ -1.68
BRPF3Q9ULD4 RNU6-222P-201ENST00000362438 107 ntBASIC4.53□□□□□ -1.68
BRPF3Q9ULD4 RNU6-270P-201ENST00000364131 105 ntBASIC4.53□□□□□ -1.68
BRPF3Q9ULD4 MIR32-201ENST00000384965 70 ntBASIC4.53□□□□□ -1.68
BRPF3Q9ULD4 MIR199A2-201ENST00000385289 110 ntBASIC4.53□□□□□ -1.68
BRPF3Q9ULD4 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC4.53□□□□□ -1.68
BRPF3Q9ULD4 RNU1-101P-201ENST00000391171 127 ntBASIC4.53□□□□□ -1.68
BRPF3Q9ULD4 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC4.53□□□□□ -1.68
BRPF3Q9ULD4 FTH1P15-201ENST00000406984 280 ntBASIC4.53□□□□□ -1.68
BRPF3Q9ULD4 AC074117.2-201ENST00000417130 397 ntBASIC4.53□□□□□ -1.68
BRPF3Q9ULD4 AC096920.1-201ENST00000423991 241 ntBASIC4.53□□□□□ -1.68
BRPF3Q9ULD4 RPL26P9-201ENST00000457466 433 ntBASIC4.53□□□□□ -1.68
BRPF3Q9ULD4 RPS26P21-201ENST00000475397 348 ntBASIC4.53□□□□□ -1.68
BRPF3Q9ULD4 MRPL42P6-201ENST00000486397 371 ntBASIC4.53□□□□□ -1.68
BRPF3Q9ULD4 TRBV12-2-201ENST00000489763 344 ntBASIC4.53□□□□□ -1.68
BRPF3Q9ULD4 HMGB1P35-201ENST00000503360 598 ntBASIC4.53□□□□□ -1.68
BRPF3Q9ULD4 AC022868.1-201ENST00000517767 391 ntBASIC4.53□□□□□ -1.68
BRPF3Q9ULD4 NACAP3-201ENST00000552100 481 ntBASIC4.53□□□□□ -1.68
BRPF3Q9ULD4 AC007375.1-201ENST00000554513 578 ntBASIC4.53□□□□□ -1.68
BRPF3Q9ULD4 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC4.53□□□□□ -1.68
BRPF3Q9ULD4 RMST_6.1-201ENST00000611980 203 ntBASIC4.53□□□□□ -1.68
BRPF3Q9ULD4 MIR376A1-201ENST00000616574 68 ntBASIC4.53□□□□□ -1.68
BRPF3Q9ULD4 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC4.52□□□□□ -1.69
BRPF3Q9ULD4 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
BRPF3Q9ULD4 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
BRPF3Q9ULD4 DLEU2_6.3-201ENST00000340052 136 ntBASIC4.52□□□□□ -1.69
BRPF3Q9ULD4 SNORD115-32-201ENST00000364079 82 ntBASIC4.52□□□□□ -1.69
BRPF3Q9ULD4 SNORD32A-201ENST00000364805 84 ntBASIC4.52□□□□□ -1.69
BRPF3Q9ULD4 RNA5SP479-201ENST00000364858 117 ntBASIC4.52□□□□□ -1.69
BRPF3Q9ULD4 RNU1-140P-201ENST00000365040 165 ntBASIC4.52□□□□□ -1.69
BRPF3Q9ULD4 RNU6-1280P-201ENST00000365211 107 ntBASIC4.52□□□□□ -1.69
BRPF3Q9ULD4 Y_RNA.478-201ENST00000384358 107 ntBASIC4.52□□□□□ -1.69
BRPF3Q9ULD4 MIR215-201ENST00000384858 110 ntBASIC4.52□□□□□ -1.69
BRPF3Q9ULD4 SNORD115-46-201ENST00000390982 71 ntBASIC4.52□□□□□ -1.69
BRPF3Q9ULD4 AC099548.1-201ENST00000421443 426 ntBASIC4.52□□□□□ -1.69
BRPF3Q9ULD4 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC4.52□□□□□ -1.69
BRPF3Q9ULD4 AC007969.2-201ENST00000441891 191 ntBASIC4.52□□□□□ -1.69
BRPF3Q9ULD4 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC4.52□□□□□ -1.69
BRPF3Q9ULD4 AF186996.7-201ENST00000492781 209 ntBASIC4.52□□□□□ -1.69
BRPF3Q9ULD4 AC097462.2-201ENST00000504623 481 ntBASIC4.52□□□□□ -1.69
BRPF3Q9ULD4 RNA5SP208-201ENST00000516156 78 ntBASIC4.52□□□□□ -1.69
BRPF3Q9ULD4 AC136932.1-201ENST00000574771 208 ntBASIC4.52□□□□□ -1.69
BRPF3Q9ULD4 MIR3160-1-201ENST00000577972 85 ntBASIC4.52□□□□□ -1.69
BRPF3Q9ULD4 AL606490.9-201ENST00000603331 271 ntBASIC4.52□□□□□ -1.69
BRPF3Q9ULD4 AC019159.1-201ENST00000605094 187 ntBASIC4.52□□□□□ -1.69
BRPF3Q9ULD4 Y_RNA.772-201ENST00000606692 102 ntBASIC4.52□□□□□ -1.69
BRPF3Q9ULD4 DLEU2_6.2-201ENST00000620994 136 ntBASIC4.52□□□□□ -1.69
BRPF3Q9ULD4 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC4.52□□□□□ -1.69
BRPF3Q9ULD4 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC4.52□□□□□ -1.69
BRPF3Q9ULD4 SNORA50A-202ENST00000629536 136 ntBASIC4.52□□□□□ -1.69
BRPF3Q9ULD4 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
BRPF3Q9ULD4 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
BRPF3Q9ULD4 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC4.52□□□□□ -1.69
BRPF3Q9ULD4 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC4.51□□□□□ -1.69
BRPF3Q9ULD4 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC4.51□□□□□ -1.69
BRPF3Q9ULD4 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC4.51□□□□□ -1.69
BRPF3Q9ULD4 RNU6-1301P-201ENST00000362724 104 ntBASIC4.51□□□□□ -1.69
BRPF3Q9ULD4 Y_RNA.143-201ENST00000363520 106 ntBASIC4.51□□□□□ -1.69
BRPF3Q9ULD4 Y_RNA.515-201ENST00000384535 112 ntBASIC4.51□□□□□ -1.69
BRPF3Q9ULD4 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC4.51□□□□□ -1.69
BRPF3Q9ULD4 AC087477.1-201ENST00000465747 340 ntBASIC4.51□□□□□ -1.69
BRPF3Q9ULD4 RAC1P2-201ENST00000511164 579 ntBASIC4.51□□□□□ -1.69
BRPF3Q9ULD4 AC008011.1-201ENST00000545989 227 ntBASIC4.51□□□□□ -1.69
BRPF3Q9ULD4 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC4.51□□□□□ -1.69
BRPF3Q9ULD4 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC4.51□□□□□ -1.69
BRPF3Q9ULD4 MIR4300-201ENST00000581016 96 ntBASIC4.51□□□□□ -1.69
BRPF3Q9ULD4 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC4.51□□□□□ -1.69
BRPF3Q9ULD4 AL356157.2-201ENST00000605122 111 ntBASIC4.51□□□□□ -1.69
BRPF3Q9ULD4 CENPF-206ENST00000614578 528 ntTSL 5 BASIC4.51□□□□□ -1.69
BRPF3Q9ULD4 AC240442.1-201ENST00000616055 283 ntBASIC4.51□□□□□ -1.69
BRPF3Q9ULD4 AP001282.2-201ENST00000616149 309 ntBASIC4.51□□□□□ -1.69
BRPF3Q9ULD4 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC4.51□□□□□ -1.69
BRPF3Q9ULD4 AL353743.1-202ENST00000431724 1695 ntBASIC4.51□□□□□ -1.69
BRPF3Q9ULD4 LINC02555-201ENST00000563933 1951 ntBASIC4.51□□□□□ -1.69
BRPF3Q9ULD4 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC4.51□□□□□ -1.69
BRPF3Q9ULD4 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
BRPF3Q9ULD4 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC4.5□□□□□ -1.69
BRPF3Q9ULD4 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC4.5□□□□□ -1.69
BRPF3Q9ULD4 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC4.5□□□□□ -1.69
BRPF3Q9ULD4 snoU2_19.2-201ENST00000363024 80 ntBASIC4.5□□□□□ -1.69
BRPF3Q9ULD4 SNORA29-201ENST00000384183 140 ntBASIC4.5□□□□□ -1.69
BRPF3Q9ULD4 MIR153-2-201ENST00000385225 87 ntBASIC4.5□□□□□ -1.69
BRPF3Q9ULD4 SNORD78.2-201ENST00000391076 69 ntBASIC4.5□□□□□ -1.69
BRPF3Q9ULD4 RPL23AP95-201ENST00000426806 265 ntBASIC4.5□□□□□ -1.69
BRPF3Q9ULD4 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC4.5□□□□□ -1.69
BRPF3Q9ULD4 HMGN2P10-201ENST00000448085 265 ntBASIC4.5□□□□□ -1.69
BRPF3Q9ULD4 RNU6-581P-201ENST00000516214 105 ntBASIC4.5□□□□□ -1.69
BRPF3Q9ULD4 RNU6-1012P-201ENST00000516606 109 ntBASIC4.5□□□□□ -1.69
BRPF3Q9ULD4 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
BRPF3Q9ULD4 AC073308.1-201ENST00000623696 305 ntBASIC4.5□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 104.6 ms