Protein–RNA interactions for Protein: Q9UJV9

DDX41, Probable ATP-dependent RNA helicase DDX41, humanhuman

Known RBP Predictions only

Length 622 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41Q9UJV9 7SK.10-201ENST00000621414 298 ntBASIC4.13□□□□□ -1.75
DDX41Q9UJV9 AC243829.7-201ENST00000633081 225 ntBASIC4.13□□□□□ -1.75
DDX41Q9UJV9 AP000553.6-201ENST00000641242 118 ntBASIC4.13□□□□□ -1.75
DDX41Q9UJV9 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC4.13□□□□□ -1.75
DDX41Q9UJV9 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC4.13□□□□□ -1.75
DDX41Q9UJV9 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
DDX41Q9UJV9 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
DDX41Q9UJV9 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
DDX41Q9UJV9 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC4.12□□□□□ -1.75
DDX41Q9UJV9 RNA5SP72-201ENST00000364442 117 ntBASIC4.12□□□□□ -1.75
DDX41Q9UJV9 RNU6-1141P-201ENST00000364520 107 ntBASIC4.12□□□□□ -1.75
DDX41Q9UJV9 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC4.12□□□□□ -1.75
DDX41Q9UJV9 RNU6-1286P-201ENST00000383871 107 ntBASIC4.12□□□□□ -1.75
DDX41Q9UJV9 Y_RNA.405-201ENST00000383979 100 ntBASIC4.12□□□□□ -1.75
DDX41Q9UJV9 Y_RNA.451-201ENST00000384200 100 ntBASIC4.12□□□□□ -1.75
DDX41Q9UJV9 Y_RNA.524-201ENST00000384564 100 ntBASIC4.12□□□□□ -1.75
DDX41Q9UJV9 Y_RNA.561-201ENST00000384694 100 ntBASIC4.12□□□□□ -1.75
DDX41Q9UJV9 SETP5-201ENST00000437270 562 ntBASIC4.12□□□□□ -1.75
DDX41Q9UJV9 MTCO3P8-201ENST00000453691 755 ntBASIC4.12□□□□□ -1.75
DDX41Q9UJV9 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC4.12□□□□□ -1.75
DDX41Q9UJV9 snoU13.30-201ENST00000458951 104 ntBASIC4.12□□□□□ -1.75
DDX41Q9UJV9 AC016632.1-201ENST00000503994 196 ntBASIC4.12□□□□□ -1.75
DDX41Q9UJV9 AC009812.2-201ENST00000517657 457 ntBASIC4.12□□□□□ -1.75
DDX41Q9UJV9 AC007458.1-201ENST00000542812 373 ntBASIC4.12□□□□□ -1.75
DDX41Q9UJV9 HSPE1P4-201ENST00000550617 308 ntBASIC4.12□□□□□ -1.75
DDX41Q9UJV9 RPL23AP78-201ENST00000599928 470 ntBASIC4.12□□□□□ -1.75
DDX41Q9UJV9 RPS29P30-201ENST00000600975 111 ntBASIC4.12□□□□□ -1.75
DDX41Q9UJV9 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC4.12□□□□□ -1.75
DDX41Q9UJV9 AC096577.2-201ENST00000611455 153 ntBASIC4.12□□□□□ -1.75
DDX41Q9UJV9 TEX41-280ENST00000629185 591 ntTSL 5 BASIC4.12□□□□□ -1.75
DDX41Q9UJV9 MIR7153-201ENST00000637758 57 ntBASIC4.12□□□□□ -1.75
DDX41Q9UJV9 AL353743.1-202ENST00000431724 1695 ntBASIC4.12□□□□□ -1.75
DDX41Q9UJV9 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC4.12□□□□□ -1.75
DDX41Q9UJV9 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
DDX41Q9UJV9 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC4.11□□□□□ -1.75
DDX41Q9UJV9 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
DDX41Q9UJV9 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC4.11□□□□□ -1.75
DDX41Q9UJV9 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
DDX41Q9UJV9 RNY3P11-201ENST00000364153 102 ntBASIC4.11□□□□□ -1.75
DDX41Q9UJV9 SNORD32A-201ENST00000364805 84 ntBASIC4.11□□□□□ -1.75
DDX41Q9UJV9 AP002088.1-201ENST00000382740 395 ntBASIC4.11□□□□□ -1.75
DDX41Q9UJV9 RNU6-748P-201ENST00000384648 107 ntBASIC4.11□□□□□ -1.75
DDX41Q9UJV9 MIR490-201ENST00000384865 128 ntBASIC4.11□□□□□ -1.75
DDX41Q9UJV9 MTHFD2P2-201ENST00000407725 247 ntBASIC4.11□□□□□ -1.75
DDX41Q9UJV9 RNU2-49P-201ENST00000410666 184 ntBASIC4.11□□□□□ -1.75
DDX41Q9UJV9 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC4.11□□□□□ -1.75
DDX41Q9UJV9 AC114482.1-201ENST00000418010 247 ntBASIC4.11□□□□□ -1.75
DDX41Q9UJV9 RPL23AP95-201ENST00000426806 265 ntBASIC4.11□□□□□ -1.75
DDX41Q9UJV9 ARF4P2-201ENST00000430209 526 ntBASIC4.11□□□□□ -1.75
DDX41Q9UJV9 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC4.11□□□□□ -1.75
DDX41Q9UJV9 CYCSP35-201ENST00000451978 304 ntBASIC4.11□□□□□ -1.75
DDX41Q9UJV9 AC006539.3-201ENST00000454258 129 ntBASIC4.11□□□□□ -1.75
DDX41Q9UJV9 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC4.11□□□□□ -1.75
DDX41Q9UJV9 AL031183.1-201ENST00000457667 207 ntBASIC4.11□□□□□ -1.75
DDX41Q9UJV9 AC010401.1-201ENST00000463867 348 ntBASIC4.11□□□□□ -1.75
DDX41Q9UJV9 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC4.11□□□□□ -1.75
DDX41Q9UJV9 AC074250.1-201ENST00000511117 192 ntBASIC4.11□□□□□ -1.75
DDX41Q9UJV9 RN7SKP209-201ENST00000516888 304 ntBASIC4.11□□□□□ -1.75
DDX41Q9UJV9 AC040926.1-201ENST00000530195 238 ntBASIC4.11□□□□□ -1.75
DDX41Q9UJV9 AC025281.1-201ENST00000567026 265 ntBASIC4.11□□□□□ -1.75
DDX41Q9UJV9 AC105137.2-201ENST00000569073 466 ntBASIC4.11□□□□□ -1.75
DDX41Q9UJV9 MIR3200-201ENST00000580767 85 ntBASIC4.11□□□□□ -1.75
DDX41Q9UJV9 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC4.11□□□□□ -1.75
DDX41Q9UJV9 AC091152.3-201ENST00000604227 325 ntBASIC4.11□□□□□ -1.75
DDX41Q9UJV9 AC087588.2-201ENST00000617667 426 ntBASIC4.11□□□□□ -1.75
DDX41Q9UJV9 AC137590.2-201ENST00000619709 240 ntBASIC4.11□□□□□ -1.75
DDX41Q9UJV9 AC007792.1-201ENST00000623023 402 ntBASIC4.11□□□□□ -1.75
DDX41Q9UJV9 SCARNA4-201ENST00000629045 128 ntBASIC4.11□□□□□ -1.75
DDX41Q9UJV9 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC4.11□□□□□ -1.75
DDX41Q9UJV9 RBBP8P1-201ENST00000449447 1844 ntBASIC4.11□□□□□ -1.75
DDX41Q9UJV9 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC4.11□□□□□ -1.75
DDX41Q9UJV9 AC073073.2-201ENST00000609827 2578 ntBASIC4.1□□□□□ -1.75
DDX41Q9UJV9 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC4.1□□□□□ -1.75
DDX41Q9UJV9 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
DDX41Q9UJV9 RNU1-105P-201ENST00000363470 161 ntBASIC4.1□□□□□ -1.75
DDX41Q9UJV9 RNU6-450P-201ENST00000364654 107 ntBASIC4.1□□□□□ -1.75
DDX41Q9UJV9 Y_RNA.504-201ENST00000384481 104 ntBASIC4.1□□□□□ -1.75
DDX41Q9UJV9 MIR147B-201ENST00000390185 80 ntBASIC4.1□□□□□ -1.75
DDX41Q9UJV9 Y_RNA.592-201ENST00000410274 109 ntBASIC4.1□□□□□ -1.75
DDX41Q9UJV9 IGKV1OR9-2-201ENST00000431378 277 ntBASIC4.1□□□□□ -1.75
DDX41Q9UJV9 MTCO3P29-201ENST00000432119 779 ntBASIC4.1□□□□□ -1.75
DDX41Q9UJV9 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC4.1□□□□□ -1.75
DDX41Q9UJV9 RPL39P29-201ENST00000447779 157 ntBASIC4.1□□□□□ -1.75
DDX41Q9UJV9 RBMY2UP-201ENST00000453474 324 ntBASIC4.1□□□□□ -1.75
DDX41Q9UJV9 RNU7-87P-201ENST00000459343 62 ntBASIC4.1□□□□□ -1.75
DDX41Q9UJV9 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC4.1□□□□□ -1.75
DDX41Q9UJV9 RPL23AP75-201ENST00000491601 451 ntBASIC4.1□□□□□ -1.75
DDX41Q9UJV9 SNORA70.18-201ENST00000516696 98 ntBASIC4.1□□□□□ -1.75
DDX41Q9UJV9 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC4.1□□□□□ -1.75
DDX41Q9UJV9 AP002404.1-201ENST00000532005 451 ntBASIC4.1□□□□□ -1.75
DDX41Q9UJV9 MRPS36P4-201ENST00000534436 298 ntBASIC4.1□□□□□ -1.75
DDX41Q9UJV9 AL355297.3-201ENST00000604082 446 ntBASIC4.1□□□□□ -1.75
DDX41Q9UJV9 PRR13P7-201ENST00000605538 430 ntBASIC4.1□□□□□ -1.75
DDX41Q9UJV9 RNU6-91P-201ENST00000607774 107 ntBASIC4.1□□□□□ -1.75
DDX41Q9UJV9 AC138305.3-201ENST00000624988 240 ntBASIC4.1□□□□□ -1.75
DDX41Q9UJV9 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC4.1□□□□□ -1.75
DDX41Q9UJV9 AC010889.1-201ENST00000566193 2666 ntBASIC4.1□□□□□ -1.75
DDX41Q9UJV9 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC4.1□□□□□ -1.75
DDX41Q9UJV9 AC073346.2-201ENST00000624724 2058 ntBASIC4.1□□□□□ -1.75
DDX41Q9UJV9 ZNF72P-201ENST00000425869 1908 ntBASIC4.09□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 161.2 ms