Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 snoU13.30-201ENST00000458951 104 ntBASIC3.17□□□□□ -1.9
VSX1Q9NZR4 U8.18-201ENST00000459285 133 ntBASIC3.17□□□□□ -1.9
VSX1Q9NZR4 MED28P2-201ENST00000475771 317 ntBASIC3.17□□□□□ -1.9
VSX1Q9NZR4 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC3.17□□□□□ -1.9
VSX1Q9NZR4 RNU5F-8P-201ENST00000515941 111 ntBASIC3.17□□□□□ -1.9
VSX1Q9NZR4 Y_RNA.713-201ENST00000517013 96 ntBASIC3.17□□□□□ -1.9
VSX1Q9NZR4 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC3.17□□□□□ -1.9
VSX1Q9NZR4 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC3.17□□□□□ -1.9
VSX1Q9NZR4 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC3.17□□□□□ -1.9
VSX1Q9NZR4 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC3.17□□□□□ -1.9
VSX1Q9NZR4 AC106785.1-201ENST00000565935 262 ntBASIC3.17□□□□□ -1.9
VSX1Q9NZR4 AL390123.1-201ENST00000603216 237 ntBASIC3.17□□□□□ -1.9
VSX1Q9NZR4 AL133393.1-201ENST00000603277 287 ntBASIC3.17□□□□□ -1.9
VSX1Q9NZR4 RNU6-91P-201ENST00000607774 107 ntBASIC3.17□□□□□ -1.9
VSX1Q9NZR4 RMST_8.1-201ENST00000610287 165 ntBASIC3.17□□□□□ -1.9
VSX1Q9NZR4 RMST_6.1-201ENST00000611980 203 ntBASIC3.17□□□□□ -1.9
VSX1Q9NZR4 MIR1244-1-201ENST00000612829 85 ntBASIC3.17□□□□□ -1.9
VSX1Q9NZR4 AC006111.3-201ENST00000622137 383 ntBASIC3.17□□□□□ -1.9
VSX1Q9NZR4 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC3.17□□□□□ -1.9
VSX1Q9NZR4 MIR1244-3-201ENST00000635744 85 ntBASIC3.17□□□□□ -1.9
VSX1Q9NZR4 MIR1244-2-201ENST00000636449 85 ntBASIC3.17□□□□□ -1.9
VSX1Q9NZR4 MIR1244-4-202ENST00000636813 85 ntBASIC3.17□□□□□ -1.9
VSX1Q9NZR4 U6.104-201ENST00000637979 90 ntBASIC3.17□□□□□ -1.9
VSX1Q9NZR4 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
VSX1Q9NZR4 AMY2A-201ENST00000414303 1634 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
VSX1Q9NZR4 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC3.16□□□□□ -1.9
VSX1Q9NZR4 AC032011.1-201ENST00000611703 1549 ntBASIC3.16□□□□□ -1.9
VSX1Q9NZR4 RNU6-858P-201ENST00000362436 107 ntBASIC3.16□□□□□ -1.9
VSX1Q9NZR4 RNU6-1141P-201ENST00000364520 107 ntBASIC3.16□□□□□ -1.9
VSX1Q9NZR4 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC3.16□□□□□ -1.9
VSX1Q9NZR4 RNU6-968P-201ENST00000384076 107 ntBASIC3.16□□□□□ -1.9
VSX1Q9NZR4 RNU6-1222P-201ENST00000384615 107 ntBASIC3.16□□□□□ -1.9
VSX1Q9NZR4 PVALB-202ENST00000404171 422 ntTSL 2 BASIC3.16□□□□□ -1.9
VSX1Q9NZR4 FTH1P15-201ENST00000406984 280 ntBASIC3.16□□□□□ -1.9
VSX1Q9NZR4 AC114482.1-201ENST00000418010 247 ntBASIC3.16□□□□□ -1.9
VSX1Q9NZR4 RPL23AP95-201ENST00000426806 265 ntBASIC3.16□□□□□ -1.9
VSX1Q9NZR4 AL714022.1-201ENST00000439897 151 ntBASIC3.16□□□□□ -1.9
VSX1Q9NZR4 AC007969.2-201ENST00000441891 191 ntBASIC3.16□□□□□ -1.9
VSX1Q9NZR4 RPS3AP12-201ENST00000443616 753 ntBASIC3.16□□□□□ -1.9
VSX1Q9NZR4 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC3.16□□□□□ -1.9
VSX1Q9NZR4 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC3.16□□□□□ -1.9
VSX1Q9NZR4 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC3.16□□□□□ -1.9
VSX1Q9NZR4 MTATP8P1-201ENST00000467115 207 ntBASIC3.16□□□□□ -1.9
VSX1Q9NZR4 AC104564.1-201ENST00000493028 407 ntBASIC3.16□□□□□ -1.9
VSX1Q9NZR4 RPL22P13-201ENST00000493291 347 ntBASIC3.16□□□□□ -1.9
VSX1Q9NZR4 AC006199.1-201ENST00000548728 219 ntBASIC3.16□□□□□ -1.9
VSX1Q9NZR4 TGIF1P1-201ENST00000558095 802 ntBASIC3.16□□□□□ -1.9
VSX1Q9NZR4 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC3.16□□□□□ -1.9
VSX1Q9NZR4 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC3.16□□□□□ -1.9
VSX1Q9NZR4 AC020895.1-201ENST00000595362 272 ntBASIC3.16□□□□□ -1.9
VSX1Q9NZR4 AC010205.1-201ENST00000616668 449 ntBASIC3.16□□□□□ -1.9
VSX1Q9NZR4 TTK-211ENST00000627129 240 ntTSL 5 BASIC3.16□□□□□ -1.9
VSX1Q9NZR4 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC3.16□□□□□ -1.9
VSX1Q9NZR4 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
VSX1Q9NZR4 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC3.16□□□□□ -1.9
VSX1Q9NZR4 POSTN-203ENST00000379747 3373 ntAPPRIS P3 TSL 1 (best) BASIC3.15□□□□□ -1.9
VSX1Q9NZR4 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC3.15□□□□□ -1.91
VSX1Q9NZR4 Y_RNA.106-201ENST00000363189 100 ntBASIC3.15□□□□□ -1.91
VSX1Q9NZR4 RNU6-137P-201ENST00000363680 108 ntBASIC3.15□□□□□ -1.91
VSX1Q9NZR4 DYNLT3P1-201ENST00000378574 347 ntBASIC3.15□□□□□ -1.91
VSX1Q9NZR4 ATP5A1P2-201ENST00000412323 255 ntBASIC3.15□□□□□ -1.91
VSX1Q9NZR4 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC3.15□□□□□ -1.91
VSX1Q9NZR4 AC096649.2-201ENST00000416186 393 ntBASIC3.15□□□□□ -1.91
VSX1Q9NZR4 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC3.15□□□□□ -1.91
VSX1Q9NZR4 AL357552.1-201ENST00000445254 415 ntBASIC3.15□□□□□ -1.91
VSX1Q9NZR4 FCF1P4-201ENST00000448326 183 ntBASIC3.15□□□□□ -1.91
VSX1Q9NZR4 snoU13.28-201ENST00000459235 104 ntBASIC3.15□□□□□ -1.91
VSX1Q9NZR4 AC016632.1-201ENST00000503994 196 ntBASIC3.15□□□□□ -1.91
VSX1Q9NZR4 AC108043.1-201ENST00000512696 574 ntBASIC3.15□□□□□ -1.91
VSX1Q9NZR4 RNU6-1198P-201ENST00000516904 67 ntBASIC3.15□□□□□ -1.91
VSX1Q9NZR4 AC131281.1-201ENST00000522984 164 ntBASIC3.15□□□□□ -1.91
VSX1Q9NZR4 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC3.15□□□□□ -1.91
VSX1Q9NZR4 MTND4LP5-201ENST00000605152 292 ntBASIC3.15□□□□□ -1.91
VSX1Q9NZR4 AC004832.5-201ENST00000608677 401 ntBASIC3.15□□□□□ -1.91
VSX1Q9NZR4 Clostridiales-1.2-201ENST00000636724 160 ntBASIC3.15□□□□□ -1.91
VSX1Q9NZR4 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC3.15□□□□□ -1.91
VSX1Q9NZR4 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
VSX1Q9NZR4 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
VSX1Q9NZR4 AP000560.1-201ENST00000624150 1937 ntBASIC3.15□□□□□ -1.91
VSX1Q9NZR4 PWAR6-201ENST00000552334 4618 ntBASIC3.15□□□□□ -1.91
VSX1Q9NZR4 AC233263.6-201ENST00000631132 1963 ntBASIC3.14□□□□□ -1.91
VSX1Q9NZR4 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
VSX1Q9NZR4 AC103988.1-201ENST00000566382 2177 ntBASIC3.14□□□□□ -1.91
VSX1Q9NZR4 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC3.14□□□□□ -1.91
VSX1Q9NZR4 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC3.14□□□□□ -1.91
VSX1Q9NZR4 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC3.14□□□□□ -1.91
VSX1Q9NZR4 AC092268.1-201ENST00000342691 405 ntBASIC3.14□□□□□ -1.91
VSX1Q9NZR4 Y_RNA.27-201ENST00000362540 103 ntBASIC3.14□□□□□ -1.91
VSX1Q9NZR4 RNU1-76P-201ENST00000362903 159 ntBASIC3.14□□□□□ -1.91
VSX1Q9NZR4 SNORD56.1-201ENST00000362913 68 ntBASIC3.14□□□□□ -1.91
VSX1Q9NZR4 RNA5SP51-201ENST00000364750 119 ntBASIC3.14□□□□□ -1.91
VSX1Q9NZR4 Y_RNA.405-201ENST00000383979 100 ntBASIC3.14□□□□□ -1.91
VSX1Q9NZR4 Y_RNA.451-201ENST00000384200 100 ntBASIC3.14□□□□□ -1.91
VSX1Q9NZR4 Y_RNA.471-201ENST00000384312 102 ntBASIC3.14□□□□□ -1.91
VSX1Q9NZR4 Y_RNA.524-201ENST00000384564 100 ntBASIC3.14□□□□□ -1.91
VSX1Q9NZR4 Y_RNA.561-201ENST00000384694 100 ntBASIC3.14□□□□□ -1.91
VSX1Q9NZR4 SNORA57.1-201ENST00000391227 145 ntBASIC3.14□□□□□ -1.91
VSX1Q9NZR4 RNA5SP44-201ENST00000410446 133 ntBASIC3.14□□□□□ -1.91
VSX1Q9NZR4 RNU6-1077P-201ENST00000410506 102 ntBASIC3.14□□□□□ -1.91
VSX1Q9NZR4 RN7SKP61-201ENST00000410642 295 ntBASIC3.14□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 101.6 ms