Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 AC009318.2-201ENST00000610917 651 ntBASIC3.36□□□□□ -1.87
TDP1Q9NUW8 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC3.36□□□□□ -1.87
TDP1Q9NUW8 RNVU1-4-201ENST00000612985 164 ntBASIC3.36□□□□□ -1.87
TDP1Q9NUW8 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC3.36□□□□□ -1.87
TDP1Q9NUW8 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC3.36□□□□□ -1.87
TDP1Q9NUW8 AC233263.6-201ENST00000631132 1963 ntBASIC3.36□□□□□ -1.87
TDP1Q9NUW8 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC3.36□□□□□ -1.87
TDP1Q9NUW8 GABRG2-229ENST00000641017 3628 ntBASIC3.36□□□□□ -1.87
TDP1Q9NUW8 ZNF299P-201ENST00000406845 1804 ntBASIC3.35□□□□□ -1.87
TDP1Q9NUW8 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC3.35□□□□□ -1.87
TDP1Q9NUW8 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
TDP1Q9NUW8 IQCG-205ENST00000455191 1981 ntAPPRIS P1 TSL 2 BASIC3.35□□□□□ -1.87
TDP1Q9NUW8 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC3.35□□□□□ -1.87
TDP1Q9NUW8 Y_RNA.123-201ENST00000363338 102 ntBASIC3.35□□□□□ -1.87
TDP1Q9NUW8 RNU6-784P-201ENST00000384330 106 ntBASIC3.35□□□□□ -1.87
TDP1Q9NUW8 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC3.35□□□□□ -1.87
TDP1Q9NUW8 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC3.35□□□□□ -1.87
TDP1Q9NUW8 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC3.35□□□□□ -1.87
TDP1Q9NUW8 MRPS18CP6-201ENST00000423587 223 ntBASIC3.35□□□□□ -1.87
TDP1Q9NUW8 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC3.35□□□□□ -1.87
TDP1Q9NUW8 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC3.35□□□□□ -1.87
TDP1Q9NUW8 HMGN2P20-201ENST00000437531 273 ntBASIC3.35□□□□□ -1.87
TDP1Q9NUW8 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC3.35□□□□□ -1.87
TDP1Q9NUW8 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC3.35□□□□□ -1.87
TDP1Q9NUW8 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC3.35□□□□□ -1.87
TDP1Q9NUW8 GSTA11P-201ENST00000452866 669 ntBASIC3.35□□□□□ -1.87
TDP1Q9NUW8 AC079354.2-201ENST00000453523 154 ntBASIC3.35□□□□□ -1.87
TDP1Q9NUW8 AP001486.1-201ENST00000463339 476 ntBASIC3.35□□□□□ -1.87
TDP1Q9NUW8 HMGN1P10-201ENST00000474557 553 ntBASIC3.35□□□□□ -1.87
TDP1Q9NUW8 SNORD116.3-201ENST00000517176 78 ntBASIC3.35□□□□□ -1.87
TDP1Q9NUW8 AC009812.2-201ENST00000517657 457 ntBASIC3.35□□□□□ -1.87
TDP1Q9NUW8 AL355802.3-201ENST00000607571 545 ntBASIC3.35□□□□□ -1.87
TDP1Q9NUW8 AC006157.1-201ENST00000611750 366 ntBASIC3.35□□□□□ -1.87
TDP1Q9NUW8 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.35□□□□□ -1.87
TDP1Q9NUW8 AC024581.2-201ENST00000619986 252 ntBASIC3.35□□□□□ -1.87
TDP1Q9NUW8 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC3.35□□□□□ -1.87
TDP1Q9NUW8 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC3.35□□□□□ -1.87
TDP1Q9NUW8 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC3.35□□□□□ -1.87
TDP1Q9NUW8 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC3.35□□□□□ -1.87
TDP1Q9NUW8 MTND4P1-201ENST00000457501 1466 ntBASIC3.35□□□□□ -1.87
TDP1Q9NUW8 ZNF826P-207ENST00000622273 1910 ntBASIC3.34□□□□□ -1.87
TDP1Q9NUW8 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC3.34□□□□□ -1.87
TDP1Q9NUW8 MAPK10-362ENST00000641864 4484 ntBASIC3.34□□□□□ -1.87
TDP1Q9NUW8 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
TDP1Q9NUW8 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC3.34□□□□□ -1.87
TDP1Q9NUW8 OFD1P6Y-202ENST00000451061 2724 ntBASIC3.34□□□□□ -1.87
TDP1Q9NUW8 RNU6-99P-201ENST00000364721 107 ntBASIC3.34□□□□□ -1.87
TDP1Q9NUW8 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC3.34□□□□□ -1.87
TDP1Q9NUW8 RNU6-639P-201ENST00000384074 107 ntBASIC3.34□□□□□ -1.87
TDP1Q9NUW8 RNU6-1032P-201ENST00000384100 107 ntBASIC3.34□□□□□ -1.87
TDP1Q9NUW8 BTF3L4P2-201ENST00000392798 346 ntBASIC3.34□□□□□ -1.87
TDP1Q9NUW8 AL138885.1-201ENST00000405921 675 ntBASIC3.34□□□□□ -1.87
TDP1Q9NUW8 RNU6-1245P-201ENST00000411130 106 ntBASIC3.34□□□□□ -1.87
TDP1Q9NUW8 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC3.34□□□□□ -1.87
TDP1Q9NUW8 AL160004.2-201ENST00000432935 350 ntBASIC3.34□□□□□ -1.87
TDP1Q9NUW8 AC007969.2-201ENST00000441891 191 ntBASIC3.34□□□□□ -1.87
TDP1Q9NUW8 AL031659.1-201ENST00000447075 539 ntBASIC3.34□□□□□ -1.87
TDP1Q9NUW8 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
TDP1Q9NUW8 CENPBD1P1-201ENST00000464061 469 ntBASIC3.34□□□□□ -1.87
TDP1Q9NUW8 AL049873.1-201ENST00000480540 376 ntBASIC3.34□□□□□ -1.87
TDP1Q9NUW8 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC3.34□□□□□ -1.87
TDP1Q9NUW8 AKIRIN2P1-201ENST00000505898 352 ntBASIC3.34□□□□□ -1.87
TDP1Q9NUW8 AC105758.1-201ENST00000506038 399 ntBASIC3.34□□□□□ -1.87
TDP1Q9NUW8 RNU6-1045P-201ENST00000516321 107 ntBASIC3.34□□□□□ -1.87
TDP1Q9NUW8 MIR2682-201ENST00000580305 110 ntBASIC3.34□□□□□ -1.87
TDP1Q9NUW8 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC3.34□□□□□ -1.87
TDP1Q9NUW8 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC3.34□□□□□ -1.87
TDP1Q9NUW8 AC019159.1-201ENST00000605094 187 ntBASIC3.34□□□□□ -1.87
TDP1Q9NUW8 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC3.34□□□□□ -1.87
TDP1Q9NUW8 AC116312.1-201ENST00000606841 314 ntBASIC3.34□□□□□ -1.87
TDP1Q9NUW8 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC3.34□□□□□ -1.87
TDP1Q9NUW8 MIR3529-201ENST00000637713 78 ntBASIC3.34□□□□□ -1.87
TDP1Q9NUW8 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC3.34□□□□□ -1.87
TDP1Q9NUW8 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC3.34□□□□□ -1.88
TDP1Q9NUW8 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC3.33□□□□□ -1.88
TDP1Q9NUW8 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
TDP1Q9NUW8 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC3.33□□□□□ -1.88
TDP1Q9NUW8 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC3.33□□□□□ -1.88
TDP1Q9NUW8 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
TDP1Q9NUW8 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
TDP1Q9NUW8 RNU6-595P-201ENST00000363944 107 ntBASIC3.33□□□□□ -1.88
TDP1Q9NUW8 RNU6-843P-201ENST00000384454 104 ntBASIC3.33□□□□□ -1.88
TDP1Q9NUW8 U3.26-201ENST00000391236 204 ntBASIC3.33□□□□□ -1.88
TDP1Q9NUW8 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC3.33□□□□□ -1.88
TDP1Q9NUW8 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC3.33□□□□□ -1.88
TDP1Q9NUW8 AC099799.1-201ENST00000439809 192 ntBASIC3.33□□□□□ -1.88
TDP1Q9NUW8 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC3.33□□□□□ -1.88
TDP1Q9NUW8 SNORA59A-201ENST00000459326 152 ntBASIC3.33□□□□□ -1.88
TDP1Q9NUW8 AP001025.1-201ENST00000486139 332 ntBASIC3.33□□□□□ -1.88
TDP1Q9NUW8 AC097462.2-201ENST00000504623 481 ntBASIC3.33□□□□□ -1.88
TDP1Q9NUW8 RNU6-711P-201ENST00000517255 106 ntBASIC3.33□□□□□ -1.88
TDP1Q9NUW8 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC3.33□□□□□ -1.88
TDP1Q9NUW8 AC091152.3-201ENST00000604227 325 ntBASIC3.33□□□□□ -1.88
TDP1Q9NUW8 SCARNA15.3-201ENST00000626315 122 ntBASIC3.33□□□□□ -1.88
TDP1Q9NUW8 SCARNA4.1-201ENST00000628597 123 ntBASIC3.33□□□□□ -1.88
TDP1Q9NUW8 AC004944.1-201ENST00000517807 3059 ntBASIC3.33□□□□□ -1.88
TDP1Q9NUW8 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
TDP1Q9NUW8 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC3.33□□□□□ -1.88
TDP1Q9NUW8 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.33□□□□□ -1.88
TDP1Q9NUW8 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC3.32□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 147.4 ms