Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
TRIM39Q9HCM9 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
TRIM39Q9HCM9 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
TRIM39Q9HCM9 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
TRIM39Q9HCM9 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
TRIM39Q9HCM9 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
TRIM39Q9HCM9 ZBTB8OSP1-201ENST00000342688 498 ntBASIC3.6□□□□□ -1.83
TRIM39Q9HCM9 RNU6-1309P-201ENST00000363305 108 ntBASIC3.6□□□□□ -1.83
TRIM39Q9HCM9 Y_RNA.144-201ENST00000363521 113 ntBASIC3.6□□□□□ -1.83
TRIM39Q9HCM9 SNORD115-32-201ENST00000364079 82 ntBASIC3.6□□□□□ -1.83
TRIM39Q9HCM9 RNA5SP139-201ENST00000364340 117 ntBASIC3.6□□□□□ -1.83
TRIM39Q9HCM9 U3.13-201ENST00000364804 214 ntBASIC3.6□□□□□ -1.83
TRIM39Q9HCM9 MTHFD2P2-201ENST00000407725 247 ntBASIC3.6□□□□□ -1.83
TRIM39Q9HCM9 Y_RNA.592-201ENST00000410274 109 ntBASIC3.6□□□□□ -1.83
TRIM39Q9HCM9 AC114482.1-201ENST00000418010 247 ntBASIC3.6□□□□□ -1.83
TRIM39Q9HCM9 AP000907.1-201ENST00000428428 510 ntBASIC3.6□□□□□ -1.83
TRIM39Q9HCM9 RPL21P40-201ENST00000428586 483 ntBASIC3.6□□□□□ -1.83
TRIM39Q9HCM9 OR2AQ1P-201ENST00000451972 200 ntBASIC3.6□□□□□ -1.83
TRIM39Q9HCM9 MTCO3P8-201ENST00000453691 755 ntBASIC3.6□□□□□ -1.83
TRIM39Q9HCM9 RNU7-87P-201ENST00000459343 62 ntBASIC3.6□□□□□ -1.83
TRIM39Q9HCM9 AL049830.2-201ENST00000480072 201 ntBASIC3.6□□□□□ -1.83
TRIM39Q9HCM9 RPS4XP22-201ENST00000480755 780 ntBASIC3.6□□□□□ -1.83
TRIM39Q9HCM9 AC106707.2-201ENST00000484182 374 ntBASIC3.6□□□□□ -1.83
TRIM39Q9HCM9 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC3.6□□□□□ -1.83
TRIM39Q9HCM9 AC091874.1-201ENST00000511402 339 ntBASIC3.6□□□□□ -1.83
TRIM39Q9HCM9 RN7SKP272-201ENST00000516988 232 ntBASIC3.6□□□□□ -1.83
TRIM39Q9HCM9 MIR2355-201ENST00000517199 87 ntBASIC3.6□□□□□ -1.83
TRIM39Q9HCM9 AC026403.1-201ENST00000518938 295 ntBASIC3.6□□□□□ -1.83
TRIM39Q9HCM9 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC3.6□□□□□ -1.83
TRIM39Q9HCM9 AC113195.1-201ENST00000579952 141 ntBASIC3.6□□□□□ -1.83
TRIM39Q9HCM9 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC3.6□□□□□ -1.83
TRIM39Q9HCM9 SNORA51-201ENST00000606420 132 ntBASIC3.6□□□□□ -1.83
TRIM39Q9HCM9 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.6□□□□□ -1.83
TRIM39Q9HCM9 MIR7153-201ENST00000637758 57 ntBASIC3.6□□□□□ -1.83
TRIM39Q9HCM9 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
TRIM39Q9HCM9 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
TRIM39Q9HCM9 ZNF826P-207ENST00000622273 1910 ntBASIC3.6□□□□□ -1.83
TRIM39Q9HCM9 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC3.6□□□□□ -1.83
TRIM39Q9HCM9 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC3.59□□□□□ -1.83
TRIM39Q9HCM9 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.59□□□□□ -1.83
TRIM39Q9HCM9 RNY3P11-201ENST00000364153 102 ntBASIC3.59□□□□□ -1.83
TRIM39Q9HCM9 RNU4-56P-201ENST00000364700 142 ntBASIC3.59□□□□□ -1.83
TRIM39Q9HCM9 SNORA63.7-201ENST00000365579 123 ntBASIC3.59□□□□□ -1.83
TRIM39Q9HCM9 MIR153-2-201ENST00000385225 87 ntBASIC3.59□□□□□ -1.83
TRIM39Q9HCM9 RNU6-823P-201ENST00000391042 103 ntBASIC3.59□□□□□ -1.83
TRIM39Q9HCM9 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
TRIM39Q9HCM9 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC3.59□□□□□ -1.83
TRIM39Q9HCM9 DPH3P2-201ENST00000422618 250 ntBASIC3.59□□□□□ -1.83
TRIM39Q9HCM9 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC3.59□□□□□ -1.83
TRIM39Q9HCM9 NDUFB1P1-201ENST00000435191 180 ntBASIC3.59□□□□□ -1.83
TRIM39Q9HCM9 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC3.59□□□□□ -1.83
TRIM39Q9HCM9 AC087477.1-201ENST00000465747 340 ntBASIC3.59□□□□□ -1.83
TRIM39Q9HCM9 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC3.59□□□□□ -1.83
TRIM39Q9HCM9 TAF8-207ENST00000482432 556 ntTSL 2 BASIC3.59□□□□□ -1.83
TRIM39Q9HCM9 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC3.59□□□□□ -1.83
TRIM39Q9HCM9 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC3.59□□□□□ -1.83
TRIM39Q9HCM9 RNU6-567P-201ENST00000516746 107 ntBASIC3.59□□□□□ -1.83
TRIM39Q9HCM9 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC3.59□□□□□ -1.83
TRIM39Q9HCM9 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
TRIM39Q9HCM9 AC040926.1-201ENST00000530195 238 ntBASIC3.59□□□□□ -1.83
TRIM39Q9HCM9 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC3.59□□□□□ -1.83
TRIM39Q9HCM9 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC3.59□□□□□ -1.83
TRIM39Q9HCM9 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC3.59□□□□□ -1.83
TRIM39Q9HCM9 RPS15AP11-201ENST00000594193 385 ntBASIC3.59□□□□□ -1.83
TRIM39Q9HCM9 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC3.59□□□□□ -1.83
TRIM39Q9HCM9 AC006557.5-201ENST00000603126 811 ntBASIC3.59□□□□□ -1.83
TRIM39Q9HCM9 AL355297.3-201ENST00000604082 446 ntBASIC3.59□□□□□ -1.83
TRIM39Q9HCM9 AL359198.2-201ENST00000611836 194 ntBASIC3.59□□□□□ -1.83
TRIM39Q9HCM9 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC3.59□□□□□ -1.83
TRIM39Q9HCM9 AC138305.3-201ENST00000624988 240 ntBASIC3.59□□□□□ -1.83
TRIM39Q9HCM9 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC3.59□□□□□ -1.83
TRIM39Q9HCM9 AC009093.8-201ENST00000641769 292 ntBASIC3.59□□□□□ -1.83
TRIM39Q9HCM9 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
TRIM39Q9HCM9 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.59□□□□□ -1.83
TRIM39Q9HCM9 POSTN-203ENST00000379747 3373 ntAPPRIS P3 TSL 1 (best) BASIC3.59□□□□□ -1.83
TRIM39Q9HCM9 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.84
TRIM39Q9HCM9 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
TRIM39Q9HCM9 RNU6-1159P-201ENST00000362933 107 ntBASIC3.58□□□□□ -1.84
TRIM39Q9HCM9 SNORD114-19-201ENST00000363072 75 ntBASIC3.58□□□□□ -1.84
TRIM39Q9HCM9 Y_RNA.149-201ENST00000363558 117 ntBASIC3.58□□□□□ -1.84
TRIM39Q9HCM9 RNU4-50P-201ENST00000364361 141 ntBASIC3.58□□□□□ -1.84
TRIM39Q9HCM9 SNORA29-201ENST00000384183 140 ntBASIC3.58□□□□□ -1.84
TRIM39Q9HCM9 RNU1-101P-201ENST00000391171 127 ntBASIC3.58□□□□□ -1.84
TRIM39Q9HCM9 MIR1302-3-201ENST00000408128 138 ntBASIC3.58□□□□□ -1.84
TRIM39Q9HCM9 RPS3AP12-201ENST00000443616 753 ntBASIC3.58□□□□□ -1.84
TRIM39Q9HCM9 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC3.58□□□□□ -1.84
TRIM39Q9HCM9 RPL30P1-201ENST00000488676 339 ntBASIC3.58□□□□□ -1.84
TRIM39Q9HCM9 AC104619.4-201ENST00000510773 249 ntBASIC3.58□□□□□ -1.84
TRIM39Q9HCM9 MIR5571-201ENST00000577998 113 ntBASIC3.58□□□□□ -1.84
TRIM39Q9HCM9 AC012493.2-201ENST00000595083 291 ntBASIC3.58□□□□□ -1.84
TRIM39Q9HCM9 uc_338.14-201ENST00000613162 166 ntBASIC3.58□□□□□ -1.84
TRIM39Q9HCM9 XIST_intron.1-201ENST00000619444 68 ntBASIC3.58□□□□□ -1.84
TRIM39Q9HCM9 U6.98-201ENST00000637157 84 ntBASIC3.58□□□□□ -1.84
TRIM39Q9HCM9 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC3.58□□□□□ -1.84
TRIM39Q9HCM9 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC3.58□□□□□ -1.84
TRIM39Q9HCM9 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
TRIM39Q9HCM9 SNORD9-201ENST00000362566 104 ntBASIC3.57□□□□□ -1.84
TRIM39Q9HCM9 Y_RNA.133-201ENST00000363428 110 ntBASIC3.57□□□□□ -1.84
TRIM39Q9HCM9 RNU6-450P-201ENST00000364654 107 ntBASIC3.57□□□□□ -1.84
TRIM39Q9HCM9 Y_RNA.557-201ENST00000384680 107 ntBASIC3.57□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 104.4 ms