Protein–RNA interactions for Protein: Q9H4Z3

PCIF1, Phosphorylated CTD-interacting factor 1, humanhuman

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCIF1Q9H4Z3 SNORA40.14-201ENST00000516543 86 ntBASIC3.59□□□□□ -1.83
PCIF1Q9H4Z3 ACA59.2-201ENST00000517061 156 ntBASIC3.59□□□□□ -1.83
PCIF1Q9H4Z3 COX6CP5-201ENST00000527162 228 ntBASIC3.59□□□□□ -1.83
PCIF1Q9H4Z3 MRPS36P4-201ENST00000534436 298 ntBASIC3.59□□□□□ -1.83
PCIF1Q9H4Z3 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC3.59□□□□□ -1.83
PCIF1Q9H4Z3 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC3.59□□□□□ -1.83
PCIF1Q9H4Z3 AC009163.5-201ENST00000575421 637 ntBASIC3.59□□□□□ -1.83
PCIF1Q9H4Z3 AC019159.1-201ENST00000605094 187 ntBASIC3.59□□□□□ -1.83
PCIF1Q9H4Z3 AC024581.2-201ENST00000619986 252 ntBASIC3.59□□□□□ -1.83
PCIF1Q9H4Z3 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC3.59□□□□□ -1.83
PCIF1Q9H4Z3 MTND5P1-201ENST00000445440 1375 ntBASIC3.59□□□□□ -1.83
PCIF1Q9H4Z3 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC3.59□□□□□ -1.84
PCIF1Q9H4Z3 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC3.59□□□□□ -1.84
PCIF1Q9H4Z3 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC3.59□□□□□ -1.84
PCIF1Q9H4Z3 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC3.59□□□□□ -1.84
PCIF1Q9H4Z3 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.59□□□□□ -1.84
PCIF1Q9H4Z3 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.58□□□□□ -1.84
PCIF1Q9H4Z3 MTND5P27-201ENST00000428871 1720 ntBASIC3.58□□□□□ -1.84
PCIF1Q9H4Z3 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC3.58□□□□□ -1.84
PCIF1Q9H4Z3 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
PCIF1Q9H4Z3 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
PCIF1Q9H4Z3 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
PCIF1Q9H4Z3 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC3.58□□□□□ -1.84
PCIF1Q9H4Z3 SNORD32A-201ENST00000364805 84 ntBASIC3.58□□□□□ -1.84
PCIF1Q9H4Z3 CRP-203ENST00000368111 512 ntTSL 3 BASIC3.58□□□□□ -1.84
PCIF1Q9H4Z3 Y_RNA.424-201ENST00000384063 103 ntBASIC3.58□□□□□ -1.84
PCIF1Q9H4Z3 SNORA12.2-201ENST00000391040 156 ntBASIC3.58□□□□□ -1.84
PCIF1Q9H4Z3 RNU6-1245P-201ENST00000411130 106 ntBASIC3.58□□□□□ -1.84
PCIF1Q9H4Z3 AL358453.1-201ENST00000422522 250 ntBASIC3.58□□□□□ -1.84
PCIF1Q9H4Z3 RPS15AP5-201ENST00000436276 388 ntBASIC3.58□□□□□ -1.84
PCIF1Q9H4Z3 AL513124.1-201ENST00000450410 614 ntBASIC3.58□□□□□ -1.84
PCIF1Q9H4Z3 TEX41-209ENST00000451478 452 ntTSL 2 BASIC3.58□□□□□ -1.84
PCIF1Q9H4Z3 HMGN2P7-201ENST00000456186 273 ntBASIC3.58□□□□□ -1.84
PCIF1Q9H4Z3 AC010401.1-201ENST00000463867 348 ntBASIC3.58□□□□□ -1.84
PCIF1Q9H4Z3 AC010655.3-201ENST00000478818 450 ntBASIC3.58□□□□□ -1.84
PCIF1Q9H4Z3 AC110794.1-201ENST00000505816 425 ntBASIC3.58□□□□□ -1.84
PCIF1Q9H4Z3 SNORA70.14-201ENST00000516205 110 ntBASIC3.58□□□□□ -1.84
PCIF1Q9H4Z3 AC022616.4-201ENST00000522985 181 ntBASIC3.58□□□□□ -1.84
PCIF1Q9H4Z3 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC3.58□□□□□ -1.84
PCIF1Q9H4Z3 AC124312.5-201ENST00000604451 268 ntBASIC3.58□□□□□ -1.84
PCIF1Q9H4Z3 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC3.58□□□□□ -1.84
PCIF1Q9H4Z3 RMST_8.1-201ENST00000610287 165 ntBASIC3.58□□□□□ -1.84
PCIF1Q9H4Z3 MIR8058-201ENST00000615737 89 ntBASIC3.58□□□□□ -1.84
PCIF1Q9H4Z3 AC084757.4-201ENST00000616350 526 ntBASIC3.58□□□□□ -1.84
PCIF1Q9H4Z3 MIR3199-2-201ENST00000636243 86 ntBASIC3.58□□□□□ -1.84
PCIF1Q9H4Z3 AC007496.3-201ENST00000624987 3443 ntBASIC3.58□□□□□ -1.84
PCIF1Q9H4Z3 AC010680.1-201ENST00000590024 3590 ntBASIC3.58□□□□□ -1.84
PCIF1Q9H4Z3 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
PCIF1Q9H4Z3 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.57□□□□□ -1.84
PCIF1Q9H4Z3 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.57□□□□□ -1.84
PCIF1Q9H4Z3 SNORA63.1-201ENST00000362493 131 ntBASIC3.57□□□□□ -1.84
PCIF1Q9H4Z3 SNORD14.1-201ENST00000365609 90 ntBASIC3.57□□□□□ -1.84
PCIF1Q9H4Z3 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC3.57□□□□□ -1.84
PCIF1Q9H4Z3 Z82188.1-201ENST00000436709 154 ntBASIC3.57□□□□□ -1.84
PCIF1Q9H4Z3 AL161651.1-201ENST00000440882 223 ntBASIC3.57□□□□□ -1.84
PCIF1Q9H4Z3 IPO7P1-201ENST00000442031 636 ntBASIC3.57□□□□□ -1.84
PCIF1Q9H4Z3 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC3.57□□□□□ -1.84
PCIF1Q9H4Z3 RN7SKP210-201ENST00000459176 261 ntBASIC3.57□□□□□ -1.84
PCIF1Q9H4Z3 AP001025.1-201ENST00000486139 332 ntBASIC3.57□□□□□ -1.84
PCIF1Q9H4Z3 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC3.57□□□□□ -1.84
PCIF1Q9H4Z3 AC097462.2-201ENST00000504623 481 ntBASIC3.57□□□□□ -1.84
PCIF1Q9H4Z3 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC3.57□□□□□ -1.84
PCIF1Q9H4Z3 AC144568.1-201ENST00000520139 137 ntBASIC3.57□□□□□ -1.84
PCIF1Q9H4Z3 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC3.57□□□□□ -1.84
PCIF1Q9H4Z3 AC040926.1-201ENST00000530195 238 ntBASIC3.57□□□□□ -1.84
PCIF1Q9H4Z3 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC3.57□□□□□ -1.84
PCIF1Q9H4Z3 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC3.57□□□□□ -1.84
PCIF1Q9H4Z3 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC3.57□□□□□ -1.84
PCIF1Q9H4Z3 MIR3944-201ENST00000581277 108 ntBASIC3.57□□□□□ -1.84
PCIF1Q9H4Z3 MIR4503-201ENST00000582187 83 ntBASIC3.57□□□□□ -1.84
PCIF1Q9H4Z3 VN1R91P-201ENST00000594377 169 ntBASIC3.57□□□□□ -1.84
PCIF1Q9H4Z3 Z98751.3-201ENST00000604447 521 ntBASIC3.57□□□□□ -1.84
PCIF1Q9H4Z3 U2.1-201ENST00000618978 145 ntBASIC3.57□□□□□ -1.84
PCIF1Q9H4Z3 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
PCIF1Q9H4Z3 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC3.57□□□□□ -1.84
PCIF1Q9H4Z3 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC3.56□□□□□ -1.84
PCIF1Q9H4Z3 AC233981.2-201ENST00000611524 1614 ntBASIC3.56□□□□□ -1.84
PCIF1Q9H4Z3 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC3.56□□□□□ -1.84
PCIF1Q9H4Z3 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.56□□□□□ -1.84
PCIF1Q9H4Z3 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC3.56□□□□□ -1.84
PCIF1Q9H4Z3 Y_RNA.47-201ENST00000362697 108 ntBASIC3.56□□□□□ -1.84
PCIF1Q9H4Z3 Y_RNA.149-201ENST00000363558 117 ntBASIC3.56□□□□□ -1.84
PCIF1Q9H4Z3 RNA5SP267-201ENST00000364893 126 ntBASIC3.56□□□□□ -1.84
PCIF1Q9H4Z3 Y_RNA.405-201ENST00000383979 100 ntBASIC3.56□□□□□ -1.84
PCIF1Q9H4Z3 RNU6-968P-201ENST00000384076 107 ntBASIC3.56□□□□□ -1.84
PCIF1Q9H4Z3 Y_RNA.451-201ENST00000384200 100 ntBASIC3.56□□□□□ -1.84
PCIF1Q9H4Z3 Y_RNA.524-201ENST00000384564 100 ntBASIC3.56□□□□□ -1.84
PCIF1Q9H4Z3 Y_RNA.561-201ENST00000384694 100 ntBASIC3.56□□□□□ -1.84
PCIF1Q9H4Z3 SAR1AP2-201ENST00000392696 594 ntBASIC3.56□□□□□ -1.84
PCIF1Q9H4Z3 RNU2-49P-201ENST00000410666 184 ntBASIC3.56□□□□□ -1.84
PCIF1Q9H4Z3 RPL23AP95-201ENST00000426806 265 ntBASIC3.56□□□□□ -1.84
PCIF1Q9H4Z3 CST9LP2-201ENST00000437612 320 ntBASIC3.56□□□□□ -1.84
PCIF1Q9H4Z3 Z75741.1-201ENST00000446793 314 ntBASIC3.56□□□□□ -1.84
PCIF1Q9H4Z3 HMGN1P18-201ENST00000457642 277 ntBASIC3.56□□□□□ -1.84
PCIF1Q9H4Z3 RNU7-23P-201ENST00000459465 62 ntBASIC3.56□□□□□ -1.84
PCIF1Q9H4Z3 AKIRIN2P1-201ENST00000505898 352 ntBASIC3.56□□□□□ -1.84
PCIF1Q9H4Z3 MRPS35P2-201ENST00000508242 191 ntBASIC3.56□□□□□ -1.84
PCIF1Q9H4Z3 RNU6-635P-201ENST00000516651 102 ntBASIC3.56□□□□□ -1.84
PCIF1Q9H4Z3 IGHVII-53-1-201ENST00000519538 255 ntBASIC3.56□□□□□ -1.84
PCIF1Q9H4Z3 AC104581.2-201ENST00000572227 430 ntBASIC3.56□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 146 ms