Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 RNU7-180P-201ENST00000459240 63 ntBASIC2.66□□□□□ -1.98
ZNF541Q9H0D2 MRPL42P6-201ENST00000486397 371 ntBASIC2.66□□□□□ -1.98
ZNF541Q9H0D2 MTCO3P9-201ENST00000506989 781 ntBASIC2.66□□□□□ -1.98
ZNF541Q9H0D2 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC2.66□□□□□ -1.98
ZNF541Q9H0D2 RNU6-826P-201ENST00000516827 104 ntBASIC2.66□□□□□ -1.98
ZNF541Q9H0D2 AC069113.1-201ENST00000517763 267 ntBASIC2.66□□□□□ -1.98
ZNF541Q9H0D2 AL157687.1-201ENST00000554853 619 ntBASIC2.66□□□□□ -1.98
ZNF541Q9H0D2 AC105137.2-201ENST00000569073 466 ntBASIC2.66□□□□□ -1.98
ZNF541Q9H0D2 MIR5583-1-201ENST00000580941 59 ntBASIC2.66□□□□□ -1.98
ZNF541Q9H0D2 MIR3941-201ENST00000582572 103 ntBASIC2.66□□□□□ -1.98
ZNF541Q9H0D2 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC2.66□□□□□ -1.98
ZNF541Q9H0D2 BNIP3P30-201ENST00000601184 574 ntBASIC2.66□□□□□ -1.98
ZNF541Q9H0D2 AC122108.2-201ENST00000611946 526 ntBASIC2.66□□□□□ -1.98
ZNF541Q9H0D2 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC2.66□□□□□ -1.98
ZNF541Q9H0D2 MIR1321-201ENST00000637766 79 ntBASIC2.66□□□□□ -1.98
ZNF541Q9H0D2 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC2.65□□□□□ -1.98
ZNF541Q9H0D2 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC2.65□□□□□ -1.98
ZNF541Q9H0D2 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC2.65□□□□□ -1.99
ZNF541Q9H0D2 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC2.65□□□□□ -1.99
ZNF541Q9H0D2 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC2.65□□□□□ -1.99
ZNF541Q9H0D2 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC2.65□□□□□ -1.99
ZNF541Q9H0D2 MIR21-201ENST00000362134 72 ntBASIC2.65□□□□□ -1.99
ZNF541Q9H0D2 RNU6-37P-201ENST00000362692 107 ntBASIC2.65□□□□□ -1.99
ZNF541Q9H0D2 RNU6-1090P-201ENST00000364065 94 ntBASIC2.65□□□□□ -1.99
ZNF541Q9H0D2 RNU6-11P-201ENST00000364234 107 ntBASIC2.65□□□□□ -1.99
ZNF541Q9H0D2 RNU5E-7P-201ENST00000365290 117 ntBASIC2.65□□□□□ -1.99
ZNF541Q9H0D2 RNU6-25P-201ENST00000383873 107 ntBASIC2.65□□□□□ -1.99
ZNF541Q9H0D2 RNU6-1-201ENST00000383898 107 ntBASIC2.65□□□□□ -1.99
ZNF541Q9H0D2 RNU6-1083P-201ENST00000384022 107 ntBASIC2.65□□□□□ -1.99
ZNF541Q9H0D2 RNU6-48P-201ENST00000384161 107 ntBASIC2.65□□□□□ -1.99
ZNF541Q9H0D2 RNU6-36P-201ENST00000384172 107 ntBASIC2.65□□□□□ -1.99
ZNF541Q9H0D2 RNU6-4P-201ENST00000384205 107 ntBASIC2.65□□□□□ -1.99
ZNF541Q9H0D2 RNU6-5P-201ENST00000384238 107 ntBASIC2.65□□□□□ -1.99
ZNF541Q9H0D2 RNU6-3P-201ENST00000384314 107 ntBASIC2.65□□□□□ -1.99
ZNF541Q9H0D2 RNU6-16P-201ENST00000384385 107 ntBASIC2.65□□□□□ -1.99
ZNF541Q9H0D2 RNU6-15P-201ENST00000384534 107 ntBASIC2.65□□□□□ -1.99
ZNF541Q9H0D2 RNU6-2-201ENST00000384627 107 ntBASIC2.65□□□□□ -1.99
ZNF541Q9H0D2 RNU6-29P-201ENST00000384637 107 ntBASIC2.65□□□□□ -1.99
ZNF541Q9H0D2 RNU6-9-201ENST00000384776 107 ntBASIC2.65□□□□□ -1.99
ZNF541Q9H0D2 RNU6-33P-201ENST00000384793 107 ntBASIC2.65□□□□□ -1.99
ZNF541Q9H0D2 MIR518D-201ENST00000385014 87 ntBASIC2.65□□□□□ -1.99
ZNF541Q9H0D2 SNORD115-47-201ENST00000391226 86 ntBASIC2.65□□□□□ -1.99
ZNF541Q9H0D2 RNU6-1068P-201ENST00000410958 103 ntBASIC2.65□□□□□ -1.99
ZNF541Q9H0D2 RNU2-25P-201ENST00000411041 191 ntBASIC2.65□□□□□ -1.99
ZNF541Q9H0D2 BX682237.1-201ENST00000415016 335 ntBASIC2.65□□□□□ -1.99
ZNF541Q9H0D2 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC2.65□□□□□ -1.99
ZNF541Q9H0D2 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC2.65□□□□□ -1.99
ZNF541Q9H0D2 C8orf59P1-201ENST00000429930 303 ntBASIC2.65□□□□□ -1.99
ZNF541Q9H0D2 MTND3P16-201ENST00000452205 344 ntBASIC2.65□□□□□ -1.99
ZNF541Q9H0D2 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC2.65□□□□□ -1.99
ZNF541Q9H0D2 AC092989.1-201ENST00000481235 277 ntBASIC2.65□□□□□ -1.99
ZNF541Q9H0D2 RPL36AP48-201ENST00000485521 314 ntBASIC2.65□□□□□ -1.99
ZNF541Q9H0D2 AC011005.2-201ENST00000487324 359 ntBASIC2.65□□□□□ -1.99
ZNF541Q9H0D2 RPL22P13-201ENST00000493291 347 ntBASIC2.65□□□□□ -1.99
ZNF541Q9H0D2 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC2.65□□□□□ -1.99
ZNF541Q9H0D2 RNA5SP445-201ENST00000515889 115 ntBASIC2.65□□□□□ -1.99
ZNF541Q9H0D2 RNU6-718P-201ENST00000516166 105 ntBASIC2.65□□□□□ -1.99
ZNF541Q9H0D2 SCARNA16.3-201ENST00000516595 184 ntBASIC2.65□□□□□ -1.99
ZNF541Q9H0D2 SNORD60.2-201ENST00000516883 86 ntBASIC2.65□□□□□ -1.99
ZNF541Q9H0D2 SNORA31.18-201ENST00000517043 134 ntBASIC2.65□□□□□ -1.99
ZNF541Q9H0D2 AC109635.3-201ENST00000529536 185 ntBASIC2.65□□□□□ -1.99
ZNF541Q9H0D2 AC080078.2-201ENST00000603766 501 ntBASIC2.65□□□□□ -1.99
ZNF541Q9H0D2 AL670379.10-201ENST00000604330 253 ntBASIC2.65□□□□□ -1.99
ZNF541Q9H0D2 AL670379.9-201ENST00000605428 253 ntBASIC2.65□□□□□ -1.99
ZNF541Q9H0D2 RNU6-6P-201ENST00000606623 107 ntBASIC2.65□□□□□ -1.99
ZNF541Q9H0D2 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC2.65□□□□□ -1.99
ZNF541Q9H0D2 AL359198.2-201ENST00000611836 194 ntBASIC2.65□□□□□ -1.99
ZNF541Q9H0D2 AP003400.5-201ENST00000624827 617 ntBASIC2.65□□□□□ -1.99
ZNF541Q9H0D2 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC2.64□□□□□ -1.99
ZNF541Q9H0D2 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
ZNF541Q9H0D2 MTND5P30-201ENST00000452896 1731 ntBASIC2.64□□□□□ -1.99
ZNF541Q9H0D2 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
ZNF541Q9H0D2 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
ZNF541Q9H0D2 RNU6-877P-201ENST00000383868 107 ntBASIC2.64□□□□□ -1.99
ZNF541Q9H0D2 SNORD116-20-201ENST00000384529 92 ntBASIC2.64□□□□□ -1.99
ZNF541Q9H0D2 RNU6-748P-201ENST00000384648 107 ntBASIC2.64□□□□□ -1.99
ZNF541Q9H0D2 Y_RNA.599-201ENST00000410489 109 ntBASIC2.64□□□□□ -1.99
ZNF541Q9H0D2 CALM1P1-201ENST00000442082 433 ntBASIC2.64□□□□□ -1.99
ZNF541Q9H0D2 RNU7-167P-201ENST00000459160 62 ntBASIC2.64□□□□□ -1.99
ZNF541Q9H0D2 AP001324.2-201ENST00000461163 319 ntBASIC2.64□□□□□ -1.99
ZNF541Q9H0D2 AL121769.1-201ENST00000469473 401 ntBASIC2.64□□□□□ -1.99
ZNF541Q9H0D2 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC2.64□□□□□ -1.99
ZNF541Q9H0D2 AC098799.2-201ENST00000509466 868 ntBASIC2.64□□□□□ -1.99
ZNF541Q9H0D2 RNU6-835P-201ENST00000516974 104 ntBASIC2.64□□□□□ -1.99
ZNF541Q9H0D2 AP003033.1-201ENST00000527244 415 ntBASIC2.64□□□□□ -1.99
ZNF541Q9H0D2 AC010186.2-204ENST00000537668 439 ntBASIC2.64□□□□□ -1.99
ZNF541Q9H0D2 TPRKBP2-201ENST00000565969 475 ntBASIC2.64□□□□□ -1.99
ZNF541Q9H0D2 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC2.64□□□□□ -1.99
ZNF541Q9H0D2 AC002044.1-201ENST00000606707 158 ntBASIC2.64□□□□□ -1.99
ZNF541Q9H0D2 uc_338.14-201ENST00000613162 166 ntBASIC2.64□□□□□ -1.99
ZNF541Q9H0D2 AC090517.2-201ENST00000614966 680 ntBASIC2.64□□□□□ -1.99
ZNF541Q9H0D2 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.64□□□□□ -1.99
ZNF541Q9H0D2 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC2.64□□□□□ -1.99
ZNF541Q9H0D2 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
ZNF541Q9H0D2 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC2.63□□□□□ -1.99
ZNF541Q9H0D2 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
ZNF541Q9H0D2 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC2.63□□□□□ -1.99
ZNF541Q9H0D2 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC2.63□□□□□ -1.99
ZNF541Q9H0D2 Y_RNA.373-201ENST00000365600 103 ntBASIC2.63□□□□□ -1.99
ZNF541Q9H0D2 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC2.63□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 117.5 ms