Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC4.38□□□□□ -1.71
TRAIPQ9BWF2 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
TRAIPQ9BWF2 RNU6-879P-201ENST00000364328 108 ntBASIC4.38□□□□□ -1.71
TRAIPQ9BWF2 SNORA63.7-201ENST00000365579 123 ntBASIC4.38□□□□□ -1.71
TRAIPQ9BWF2 DPH3P2-201ENST00000422618 250 ntBASIC4.38□□□□□ -1.71
TRAIPQ9BWF2 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC4.38□□□□□ -1.71
TRAIPQ9BWF2 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC4.38□□□□□ -1.71
TRAIPQ9BWF2 CHEK2P4-201ENST00000450340 246 ntBASIC4.38□□□□□ -1.71
TRAIPQ9BWF2 AP000870.1-201ENST00000472927 406 ntBASIC4.38□□□□□ -1.71
TRAIPQ9BWF2 RPS26P15-201ENST00000488067 348 ntBASIC4.38□□□□□ -1.71
TRAIPQ9BWF2 AC140059.1-201ENST00000489238 361 ntBASIC4.38□□□□□ -1.71
TRAIPQ9BWF2 AC074250.1-201ENST00000511117 192 ntBASIC4.38□□□□□ -1.71
TRAIPQ9BWF2 RNU6-1137P-201ENST00000517073 99 ntBASIC4.38□□□□□ -1.71
TRAIPQ9BWF2 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC4.38□□□□□ -1.71
TRAIPQ9BWF2 AC120057.2-201ENST00000571520 271 ntBASIC4.38□□□□□ -1.71
TRAIPQ9BWF2 MIR5047-201ENST00000579212 100 ntBASIC4.38□□□□□ -1.71
TRAIPQ9BWF2 AL390123.1-201ENST00000603216 237 ntBASIC4.38□□□□□ -1.71
TRAIPQ9BWF2 AC005296.1-201ENST00000616145 209 ntBASIC4.38□□□□□ -1.71
TRAIPQ9BWF2 AC090517.3-201ENST00000625170 141 ntBASIC4.38□□□□□ -1.71
TRAIPQ9BWF2 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
TRAIPQ9BWF2 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
TRAIPQ9BWF2 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
TRAIPQ9BWF2 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC4.37□□□□□ -1.71
TRAIPQ9BWF2 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC4.37□□□□□ -1.71
TRAIPQ9BWF2 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
TRAIPQ9BWF2 RNU6-222P-201ENST00000362438 107 ntBASIC4.37□□□□□ -1.71
TRAIPQ9BWF2 RNU6-823P-201ENST00000391042 103 ntBASIC4.37□□□□□ -1.71
TRAIPQ9BWF2 Y_RNA.645-201ENST00000391229 102 ntBASIC4.37□□□□□ -1.71
TRAIPQ9BWF2 RPL21P75-201ENST00000396599 483 ntBASIC4.37□□□□□ -1.71
TRAIPQ9BWF2 RPL21P28-201ENST00000401418 483 ntBASIC4.37□□□□□ -1.71
TRAIPQ9BWF2 RNU6ATAC-201ENST00000408749 126 ntBASIC4.37□□□□□ -1.71
TRAIPQ9BWF2 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC4.37□□□□□ -1.71
TRAIPQ9BWF2 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC4.37□□□□□ -1.71
TRAIPQ9BWF2 TBCAP1-201ENST00000436520 327 ntBASIC4.37□□□□□ -1.71
TRAIPQ9BWF2 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC4.37□□□□□ -1.71
TRAIPQ9BWF2 RPL21P11-201ENST00000461458 483 ntBASIC4.37□□□□□ -1.71
TRAIPQ9BWF2 RPL21P39-201ENST00000463605 483 ntBASIC4.37□□□□□ -1.71
TRAIPQ9BWF2 AC087190.1-201ENST00000484462 480 ntBASIC4.37□□□□□ -1.71
TRAIPQ9BWF2 AC107032.1-201ENST00000485945 480 ntBASIC4.37□□□□□ -1.71
TRAIPQ9BWF2 AC132942.1-201ENST00000486753 483 ntBASIC4.37□□□□□ -1.71
TRAIPQ9BWF2 AC093591.1-201ENST00000491435 481 ntBASIC4.37□□□□□ -1.71
TRAIPQ9BWF2 RPL21P16-201ENST00000495531 483 ntBASIC4.37□□□□□ -1.71
TRAIPQ9BWF2 MIR2114-201ENST00000516645 80 ntBASIC4.37□□□□□ -1.71
TRAIPQ9BWF2 SCARNA3-201ENST00000517097 143 ntBASIC4.37□□□□□ -1.71
TRAIPQ9BWF2 RNU6-58P-201ENST00000517143 103 ntBASIC4.37□□□□□ -1.71
TRAIPQ9BWF2 AC023632.4-201ENST00000517783 191 ntBASIC4.37□□□□□ -1.71
TRAIPQ9BWF2 CYCSP30-201ENST00000546447 172 ntBASIC4.37□□□□□ -1.71
TRAIPQ9BWF2 MIR4429-201ENST00000580105 73 ntBASIC4.37□□□□□ -1.71
TRAIPQ9BWF2 AC103858.2-201ENST00000621471 543 ntBASIC4.37□□□□□ -1.71
TRAIPQ9BWF2 AC039056.2-201ENST00000622261 511 ntBASIC4.37□□□□□ -1.71
TRAIPQ9BWF2 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC4.37□□□□□ -1.71
TRAIPQ9BWF2 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC4.37□□□□□ -1.71
TRAIPQ9BWF2 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
TRAIPQ9BWF2 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC4.37□□□□□ -1.71
TRAIPQ9BWF2 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC4.37□□□□□ -1.71
TRAIPQ9BWF2 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC4.37□□□□□ -1.71
TRAIPQ9BWF2 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC4.37□□□□□ -1.71
TRAIPQ9BWF2 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
TRAIPQ9BWF2 POSTN-202ENST00000379743 3196 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
TRAIPQ9BWF2 AC069528.2-201ENST00000624849 1991 ntBASIC4.36□□□□□ -1.71
TRAIPQ9BWF2 snoU2_19.1-201ENST00000362361 80 ntBASIC4.36□□□□□ -1.71
TRAIPQ9BWF2 Y_RNA.27-201ENST00000362540 103 ntBASIC4.36□□□□□ -1.71
TRAIPQ9BWF2 U3.9-201ENST00000363823 204 ntBASIC4.36□□□□□ -1.71
TRAIPQ9BWF2 RNU6-450P-201ENST00000364654 107 ntBASIC4.36□□□□□ -1.71
TRAIPQ9BWF2 U8.10-201ENST00000384260 133 ntBASIC4.36□□□□□ -1.71
TRAIPQ9BWF2 MIR23B-201ENST00000384832 97 ntBASIC4.36□□□□□ -1.71
TRAIPQ9BWF2 MIR29B2-201ENST00000385055 81 ntBASIC4.36□□□□□ -1.71
TRAIPQ9BWF2 PTMAP2-201ENST00000397627 327 ntBASIC4.36□□□□□ -1.71
TRAIPQ9BWF2 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC4.36□□□□□ -1.71
TRAIPQ9BWF2 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC4.36□□□□□ -1.71
TRAIPQ9BWF2 COX6CP5-201ENST00000527162 228 ntBASIC4.36□□□□□ -1.71
TRAIPQ9BWF2 AL442163.3-201ENST00000554110 156 ntBASIC4.36□□□□□ -1.71
TRAIPQ9BWF2 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC4.36□□□□□ -1.71
TRAIPQ9BWF2 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC4.36□□□□□ -1.71
TRAIPQ9BWF2 MIR3199-1-201ENST00000582434 88 ntBASIC4.36□□□□□ -1.71
TRAIPQ9BWF2 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC4.36□□□□□ -1.71
TRAIPQ9BWF2 SNRPGP20-201ENST00000604477 205 ntBASIC4.36□□□□□ -1.71
TRAIPQ9BWF2 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC4.36□□□□□ -1.71
TRAIPQ9BWF2 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC4.36□□□□□ -1.71
TRAIPQ9BWF2 ADGRG2-205ENST00000357991 4661 ntAPPRIS P3 TSL 1 (best) BASIC4.36□□□□□ -1.71
TRAIPQ9BWF2 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC4.36□□□□□ -1.71
TRAIPQ9BWF2 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC4.36□□□□□ -1.71
TRAIPQ9BWF2 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC4.35□□□□□ -1.71
TRAIPQ9BWF2 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC4.35□□□□□ -1.71
TRAIPQ9BWF2 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC4.35□□□□□ -1.71
TRAIPQ9BWF2 MIR218-1-201ENST00000384999 110 ntBASIC4.35□□□□□ -1.71
TRAIPQ9BWF2 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC4.35□□□□□ -1.71
TRAIPQ9BWF2 RPS12P18-201ENST00000442381 270 ntBASIC4.35□□□□□ -1.71
TRAIPQ9BWF2 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC4.35□□□□□ -1.71
TRAIPQ9BWF2 AL133547.1-201ENST00000448546 220 ntBASIC4.35□□□□□ -1.71
TRAIPQ9BWF2 AC145146.1-201ENST00000496370 254 ntBASIC4.35□□□□□ -1.71
TRAIPQ9BWF2 CKS1BP2-201ENST00000497342 240 ntBASIC4.35□□□□□ -1.71
TRAIPQ9BWF2 RNU1-45P-201ENST00000517191 141 ntBASIC4.35□□□□□ -1.71
TRAIPQ9BWF2 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC4.35□□□□□ -1.71
TRAIPQ9BWF2 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC4.35□□□□□ -1.71
TRAIPQ9BWF2 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC4.35□□□□□ -1.71
TRAIPQ9BWF2 MIR5695-201ENST00000579717 85 ntBASIC4.35□□□□□ -1.71
TRAIPQ9BWF2 AC113195.1-201ENST00000579952 141 ntBASIC4.35□□□□□ -1.71
TRAIPQ9BWF2 AL356575.1-201ENST00000603008 283 ntBASIC4.35□□□□□ -1.71
TRAIPQ9BWF2 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC4.35□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 114.5 ms