Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC2.23□□□□□ -2.05
CCDC28BQ9BUN5 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC2.23□□□□□ -2.05
CCDC28BQ9BUN5 AL161651.1-201ENST00000440882 223 ntBASIC2.23□□□□□ -2.05
CCDC28BQ9BUN5 RNU7-26P-201ENST00000458980 63 ntBASIC2.23□□□□□ -2.05
CCDC28BQ9BUN5 RNU6-717P-201ENST00000459076 104 ntBASIC2.23□□□□□ -2.05
CCDC28BQ9BUN5 SRI-210ENST00000490437 570 ntTSL 2 BASIC2.23□□□□□ -2.05
CCDC28BQ9BUN5 AC116655.1-201ENST00000508324 901 ntBASIC2.23□□□□□ -2.05
CCDC28BQ9BUN5 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC2.23□□□□□ -2.05
CCDC28BQ9BUN5 Y_RNA.687-201ENST00000516558 91 ntBASIC2.23□□□□□ -2.05
CCDC28BQ9BUN5 AC087854.1-201ENST00000519706 414 ntBASIC2.23□□□□□ -2.05
CCDC28BQ9BUN5 COX6CP5-201ENST00000527162 228 ntBASIC2.23□□□□□ -2.05
CCDC28BQ9BUN5 AL121821.2-201ENST00000556081 394 ntBASIC2.23□□□□□ -2.05
CCDC28BQ9BUN5 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC2.23□□□□□ -2.05
CCDC28BQ9BUN5 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC2.23□□□□□ -2.05
CCDC28BQ9BUN5 MIR5007-201ENST00000583098 95 ntBASIC2.23□□□□□ -2.05
CCDC28BQ9BUN5 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC2.23□□□□□ -2.05
CCDC28BQ9BUN5 MIR3616-201ENST00000584070 92 ntBASIC2.23□□□□□ -2.05
CCDC28BQ9BUN5 MIR92B-201ENST00000607575 96 ntBASIC2.23□□□□□ -2.05
CCDC28BQ9BUN5 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC2.23□□□□□ -2.05
CCDC28BQ9BUN5 DLEU2_6.2-201ENST00000620994 136 ntBASIC2.23□□□□□ -2.05
CCDC28BQ9BUN5 RMST_7.1-201ENST00000621935 268 ntBASIC2.23□□□□□ -2.05
CCDC28BQ9BUN5 AC090617.10-201ENST00000624308 134 ntBASIC2.23□□□□□ -2.05
CCDC28BQ9BUN5 PCNP-208ENST00000627393 136 ntTSL 2 BASIC2.23□□□□□ -2.05
CCDC28BQ9BUN5 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC2.23□□□□□ -2.05
CCDC28BQ9BUN5 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC2.23□□□□□ -2.05
CCDC28BQ9BUN5 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC2.23□□□□□ -2.05
CCDC28BQ9BUN5 CASC19-280ENST00000642102 1351 ntBASIC2.23□□□□□ -2.05
CCDC28BQ9BUN5 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC2.22□□□□□ -2.05
CCDC28BQ9BUN5 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC2.22□□□□□ -2.05
CCDC28BQ9BUN5 RNA5SP138-201ENST00000365098 114 ntBASIC2.22□□□□□ -2.05
CCDC28BQ9BUN5 RNU2-49P-201ENST00000410666 184 ntBASIC2.22□□□□□ -2.05
CCDC28BQ9BUN5 AL358075.3-201ENST00000426289 226 ntBASIC2.22□□□□□ -2.05
CCDC28BQ9BUN5 RPS15AP28-201ENST00000435088 386 ntBASIC2.22□□□□□ -2.05
CCDC28BQ9BUN5 AC107083.1-201ENST00000439643 279 ntBASIC2.22□□□□□ -2.05
CCDC28BQ9BUN5 AC092001.1-201ENST00000453012 261 ntBASIC2.22□□□□□ -2.05
CCDC28BQ9BUN5 AC090515.1-201ENST00000465295 476 ntBASIC2.22□□□□□ -2.05
CCDC28BQ9BUN5 AC083904.1-201ENST00000487828 231 ntBASIC2.22□□□□□ -2.05
CCDC28BQ9BUN5 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC2.22□□□□□ -2.05
CCDC28BQ9BUN5 AC008413.1-201ENST00000511864 177 ntBASIC2.22□□□□□ -2.05
CCDC28BQ9BUN5 RNU6-1314P-201ENST00000517139 104 ntBASIC2.22□□□□□ -2.05
CCDC28BQ9BUN5 RNU4ATAC17P-201ENST00000517272 120 ntBASIC2.22□□□□□ -2.05
CCDC28BQ9BUN5 AC109479.2-201ENST00000517842 174 ntBASIC2.22□□□□□ -2.05
CCDC28BQ9BUN5 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC2.22□□□□□ -2.05
CCDC28BQ9BUN5 IGHVII-62-1-201ENST00000519283 235 ntBASIC2.22□□□□□ -2.05
CCDC28BQ9BUN5 BTF3P12-201ENST00000519620 469 ntBASIC2.22□□□□□ -2.05
CCDC28BQ9BUN5 COPS8P3-201ENST00000526024 482 ntBASIC2.22□□□□□ -2.05
CCDC28BQ9BUN5 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC2.22□□□□□ -2.05
CCDC28BQ9BUN5 MIR5692C1-201ENST00000585309 91 ntBASIC2.22□□□□□ -2.05
CCDC28BQ9BUN5 AL391813.1-201ENST00000603098 260 ntBASIC2.22□□□□□ -2.05
CCDC28BQ9BUN5 AC091152.3-201ENST00000604227 325 ntBASIC2.22□□□□□ -2.05
CCDC28BQ9BUN5 AL137790.1-201ENST00000634283 177 ntBASIC2.22□□□□□ -2.05
CCDC28BQ9BUN5 AC100810.6-201ENST00000638068 285 ntBASIC2.22□□□□□ -2.05
CCDC28BQ9BUN5 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC2.21□□□□□ -2.06
CCDC28BQ9BUN5 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC2.21□□□□□ -2.06
CCDC28BQ9BUN5 AL359851.1-201ENST00000569460 4997 ntBASIC2.21□□□□□ -2.06
CCDC28BQ9BUN5 RNU6-942P-201ENST00000363002 107 ntBASIC2.21□□□□□ -2.06
CCDC28BQ9BUN5 Y_RNA.86-201ENST00000363020 111 ntBASIC2.21□□□□□ -2.06
CCDC28BQ9BUN5 RNU6-254P-201ENST00000363377 107 ntBASIC2.21□□□□□ -2.06
CCDC28BQ9BUN5 RNU6-748P-201ENST00000384648 107 ntBASIC2.21□□□□□ -2.06
CCDC28BQ9BUN5 RNU6-19P-201ENST00000384718 107 ntBASIC2.21□□□□□ -2.06
CCDC28BQ9BUN5 MT-TL1-201ENST00000386347 75 ntBASIC2.21□□□□□ -2.06
CCDC28BQ9BUN5 RNU6-510P-201ENST00000391239 108 ntBASIC2.21□□□□□ -2.06
CCDC28BQ9BUN5 AL355497.1-201ENST00000406262 551 ntBASIC2.21□□□□□ -2.06
CCDC28BQ9BUN5 SNORA11-201ENST00000408789 128 ntBASIC2.21□□□□□ -2.06
CCDC28BQ9BUN5 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC2.21□□□□□ -2.06
CCDC28BQ9BUN5 PTGES3P4-201ENST00000426243 356 ntBASIC2.21□□□□□ -2.06
CCDC28BQ9BUN5 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC2.21□□□□□ -2.06
CCDC28BQ9BUN5 AL365400.1-201ENST00000431854 640 ntBASIC2.21□□□□□ -2.06
CCDC28BQ9BUN5 OSTCP8-201ENST00000445117 448 ntBASIC2.21□□□□□ -2.06
CCDC28BQ9BUN5 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC2.21□□□□□ -2.06
CCDC28BQ9BUN5 snoU109.2-201ENST00000459316 135 ntBASIC2.21□□□□□ -2.06
CCDC28BQ9BUN5 AC087884.1-201ENST00000469738 328 ntBASIC2.21□□□□□ -2.06
CCDC28BQ9BUN5 AC117503.1-201ENST00000472241 394 ntBASIC2.21□□□□□ -2.06
CCDC28BQ9BUN5 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC2.21□□□□□ -2.06
CCDC28BQ9BUN5 AC018710.1-201ENST00000506509 158 ntBASIC2.21□□□□□ -2.06
CCDC28BQ9BUN5 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC2.21□□□□□ -2.06
CCDC28BQ9BUN5 AC010486.1-201ENST00000511793 424 ntBASIC2.21□□□□□ -2.06
CCDC28BQ9BUN5 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC2.21□□□□□ -2.06
CCDC28BQ9BUN5 RNU6ATAC13P-201ENST00000516152 131 ntBASIC2.21□□□□□ -2.06
CCDC28BQ9BUN5 SNORA31.18-201ENST00000517043 134 ntBASIC2.21□□□□□ -2.06
CCDC28BQ9BUN5 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC2.21□□□□□ -2.06
CCDC28BQ9BUN5 CR383656.8-201ENST00000549046 145 ntBASIC2.21□□□□□ -2.06
CCDC28BQ9BUN5 RPS3AP23-202ENST00000574601 686 ntBASIC2.21□□□□□ -2.06
CCDC28BQ9BUN5 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC2.21□□□□□ -2.06
CCDC28BQ9BUN5 MIR3944-201ENST00000581277 108 ntBASIC2.21□□□□□ -2.06
CCDC28BQ9BUN5 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC2.21□□□□□ -2.06
CCDC28BQ9BUN5 AC008121.1-201ENST00000603244 268 ntBASIC2.21□□□□□ -2.06
CCDC28BQ9BUN5 AL355877.2-201ENST00000603670 358 ntBASIC2.21□□□□□ -2.06
CCDC28BQ9BUN5 AC007179.3-201ENST00000604976 235 ntBASIC2.21□□□□□ -2.06
CCDC28BQ9BUN5 AC096577.2-201ENST00000611455 153 ntBASIC2.21□□□□□ -2.06
CCDC28BQ9BUN5 AC010378.1-201ENST00000619270 362 ntBASIC2.21□□□□□ -2.06
CCDC28BQ9BUN5 uc_338.20-201ENST00000621563 178 ntBASIC2.21□□□□□ -2.06
CCDC28BQ9BUN5 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC2.21□□□□□ -2.06
CCDC28BQ9BUN5 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC2.21□□□□□ -2.06
CCDC28BQ9BUN5 AC073346.2-201ENST00000624724 2058 ntBASIC2.21□□□□□ -2.06
CCDC28BQ9BUN5 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC2.21□□□□□ -2.06
CCDC28BQ9BUN5 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC2.2□□□□□ -2.06
CCDC28BQ9BUN5 HAUS6P2-201ENST00000433254 2404 ntBASIC2.2□□□□□ -2.06
CCDC28BQ9BUN5 Y_RNA.88-201ENST00000363029 99 ntBASIC2.2□□□□□ -2.06
CCDC28BQ9BUN5 RNA5SP68-201ENST00000363885 119 ntBASIC2.2□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 99 ms