Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 Y_RNA.245-201ENST00000364493 95 ntBASIC4.18□□□□□ -1.74
USHBP1Q8N6Y0 MTCYBP2-201ENST00000407745 171 ntBASIC4.18□□□□□ -1.74
USHBP1Q8N6Y0 RNA5SP494-201ENST00000410653 129 ntBASIC4.18□□□□□ -1.74
USHBP1Q8N6Y0 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC4.18□□□□□ -1.74
USHBP1Q8N6Y0 RPS20P22-201ENST00000473700 357 ntBASIC4.18□□□□□ -1.74
USHBP1Q8N6Y0 RPL30P10-201ENST00000488148 337 ntBASIC4.18□□□□□ -1.74
USHBP1Q8N6Y0 AC078918.1-201ENST00000498515 228 ntBASIC4.18□□□□□ -1.74
USHBP1Q8N6Y0 HMGB3P17-201ENST00000504195 649 ntBASIC4.18□□□□□ -1.74
USHBP1Q8N6Y0 AL359273.1-201ENST00000510918 627 ntBASIC4.18□□□□□ -1.74
USHBP1Q8N6Y0 SNORA31.20-201ENST00000517111 133 ntBASIC4.18□□□□□ -1.74
USHBP1Q8N6Y0 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
USHBP1Q8N6Y0 MIR3921-201ENST00000577308 85 ntBASIC4.18□□□□□ -1.74
USHBP1Q8N6Y0 AC012433.1-201ENST00000588916 398 ntBASIC4.18□□□□□ -1.74
USHBP1Q8N6Y0 AL645944.1-201ENST00000603857 493 ntBASIC4.18□□□□□ -1.74
USHBP1Q8N6Y0 AC243829.7-201ENST00000633081 225 ntBASIC4.18□□□□□ -1.74
USHBP1Q8N6Y0 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC4.18□□□□□ -1.74
USHBP1Q8N6Y0 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
USHBP1Q8N6Y0 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
USHBP1Q8N6Y0 MAPK10-373ENST00000641983 6772 ntBASIC4.18□□□□□ -1.74
USHBP1Q8N6Y0 SLCO1B1-201ENST00000256958 2229 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
USHBP1Q8N6Y0 AC017071.1-201ENST00000564407 2204 ntBASIC4.18□□□□□ -1.74
USHBP1Q8N6Y0 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC4.17□□□□□ -1.74
USHBP1Q8N6Y0 AP000560.1-201ENST00000624150 1937 ntBASIC4.17□□□□□ -1.74
USHBP1Q8N6Y0 SNORD50.1-201ENST00000362987 71 ntBASIC4.17□□□□□ -1.74
USHBP1Q8N6Y0 Y_RNA.117-201ENST00000363294 101 ntBASIC4.17□□□□□ -1.74
USHBP1Q8N6Y0 SNORD14B-201ENST00000364533 90 ntBASIC4.17□□□□□ -1.74
USHBP1Q8N6Y0 RNU6-200P-201ENST00000364743 107 ntBASIC4.17□□□□□ -1.74
USHBP1Q8N6Y0 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC4.17□□□□□ -1.74
USHBP1Q8N6Y0 AL590135.1-201ENST00000422215 156 ntBASIC4.17□□□□□ -1.74
USHBP1Q8N6Y0 AL356867.1-201ENST00000429623 299 ntBASIC4.17□□□□□ -1.74
USHBP1Q8N6Y0 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC4.17□□□□□ -1.74
USHBP1Q8N6Y0 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC4.17□□□□□ -1.74
USHBP1Q8N6Y0 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC4.17□□□□□ -1.74
USHBP1Q8N6Y0 RPEP5-201ENST00000441137 268 ntBASIC4.17□□□□□ -1.74
USHBP1Q8N6Y0 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
USHBP1Q8N6Y0 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC4.17□□□□□ -1.74
USHBP1Q8N6Y0 RN7SKP210-201ENST00000459176 261 ntBASIC4.17□□□□□ -1.74
USHBP1Q8N6Y0 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC4.17□□□□□ -1.74
USHBP1Q8N6Y0 HMGB1P22-201ENST00000505315 124 ntBASIC4.17□□□□□ -1.74
USHBP1Q8N6Y0 RNU6-111P-201ENST00000517179 105 ntBASIC4.17□□□□□ -1.74
USHBP1Q8N6Y0 RNU4ATAC17P-201ENST00000517272 120 ntBASIC4.17□□□□□ -1.74
USHBP1Q8N6Y0 AC025755.1-201ENST00000521306 278 ntBASIC4.17□□□□□ -1.74
USHBP1Q8N6Y0 AL590705.4-201ENST00000532209 134 ntBASIC4.17□□□□□ -1.74
USHBP1Q8N6Y0 AC103996.1-201ENST00000555468 102 ntBASIC4.17□□□□□ -1.74
USHBP1Q8N6Y0 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC4.17□□□□□ -1.74
USHBP1Q8N6Y0 MIR4672-201ENST00000583126 81 ntBASIC4.17□□□□□ -1.74
USHBP1Q8N6Y0 AC008121.1-201ENST00000603244 268 ntBASIC4.17□□□□□ -1.74
USHBP1Q8N6Y0 AC098479.1-201ENST00000609225 154 ntBASIC4.17□□□□□ -1.74
USHBP1Q8N6Y0 AC099506.2-201ENST00000623074 221 ntBASIC4.17□□□□□ -1.74
USHBP1Q8N6Y0 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC4.17□□□□□ -1.74
USHBP1Q8N6Y0 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC4.17□□□□□ -1.74
USHBP1Q8N6Y0 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC4.17□□□□□ -1.74
USHBP1Q8N6Y0 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC4.17□□□□□ -1.74
USHBP1Q8N6Y0 SYT14-208ENST00000637265 13567 ntTSL 5 BASIC4.16□□□□□ -1.74
USHBP1Q8N6Y0 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC4.16□□□□□ -1.74
USHBP1Q8N6Y0 Y_RNA.20-201ENST00000362479 113 ntBASIC4.16□□□□□ -1.74
USHBP1Q8N6Y0 U3.13-201ENST00000364804 214 ntBASIC4.16□□□□□ -1.74
USHBP1Q8N6Y0 RNU6-708P-201ENST00000384217 107 ntBASIC4.16□□□□□ -1.74
USHBP1Q8N6Y0 RNA5SP239-201ENST00000410218 129 ntBASIC4.16□□□□□ -1.74
USHBP1Q8N6Y0 AL117339.3-201ENST00000418733 162 ntBASIC4.16□□□□□ -1.74
USHBP1Q8N6Y0 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC4.16□□□□□ -1.74
USHBP1Q8N6Y0 MTND5P15-201ENST00000434246 349 ntBASIC4.16□□□□□ -1.74
USHBP1Q8N6Y0 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC4.16□□□□□ -1.74
USHBP1Q8N6Y0 AK3P2-201ENST00000507976 429 ntBASIC4.16□□□□□ -1.74
USHBP1Q8N6Y0 RNU6-612P-201ENST00000516909 102 ntBASIC4.16□□□□□ -1.74
USHBP1Q8N6Y0 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC4.16□□□□□ -1.74
USHBP1Q8N6Y0 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC4.16□□□□□ -1.74
USHBP1Q8N6Y0 MIR4513-201ENST00000581077 86 ntBASIC4.16□□□□□ -1.74
USHBP1Q8N6Y0 AC009318.2-201ENST00000610917 651 ntBASIC4.16□□□□□ -1.74
USHBP1Q8N6Y0 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC4.16□□□□□ -1.74
USHBP1Q8N6Y0 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC4.16□□□□□ -1.74
USHBP1Q8N6Y0 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC4.15□□□□□ -1.74
USHBP1Q8N6Y0 CPD-202ENST00000543464 4007 ntTSL 2 BASIC4.15□□□□□ -1.74
USHBP1Q8N6Y0 ADGRL2-210ENST00000370728 6302 ntAPPRIS ALT2 TSL 5 BASIC4.15□□□□□ -1.74
USHBP1Q8N6Y0 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.74
USHBP1Q8N6Y0 LINC01505-206ENST00000637046 4266 ntTSL 5 BASIC4.15□□□□□ -1.74
USHBP1Q8N6Y0 MIR30E-201ENST00000362104 92 ntBASIC4.15□□□□□ -1.75
USHBP1Q8N6Y0 Y_RNA.27-201ENST00000362540 103 ntBASIC4.15□□□□□ -1.75
USHBP1Q8N6Y0 Y_RNA.105-201ENST00000363182 111 ntBASIC4.15□□□□□ -1.75
USHBP1Q8N6Y0 Y_RNA.416-201ENST00000384014 113 ntBASIC4.15□□□□□ -1.75
USHBP1Q8N6Y0 MIR548H3-201ENST00000408771 118 ntBASIC4.15□□□□□ -1.75
USHBP1Q8N6Y0 RNU6-121P-201ENST00000410525 99 ntBASIC4.15□□□□□ -1.75
USHBP1Q8N6Y0 RNU2-25P-201ENST00000411041 191 ntBASIC4.15□□□□□ -1.75
USHBP1Q8N6Y0 RNU6-130P-201ENST00000411112 103 ntBASIC4.15□□□□□ -1.75
USHBP1Q8N6Y0 Z85995.1-201ENST00000415547 335 ntBASIC4.15□□□□□ -1.75
USHBP1Q8N6Y0 AC096920.1-201ENST00000423991 241 ntBASIC4.15□□□□□ -1.75
USHBP1Q8N6Y0 FTH1P6-201ENST00000430768 320 ntBASIC4.15□□□□□ -1.75
USHBP1Q8N6Y0 AC004383.1-201ENST00000438135 289 ntBASIC4.15□□□□□ -1.75
USHBP1Q8N6Y0 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC4.15□□□□□ -1.75
USHBP1Q8N6Y0 AC098869.1-201ENST00000481627 292 ntBASIC4.15□□□□□ -1.75
USHBP1Q8N6Y0 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC4.15□□□□□ -1.75
USHBP1Q8N6Y0 RNU6-182P-201ENST00000516970 105 ntBASIC4.15□□□□□ -1.75
USHBP1Q8N6Y0 RNA5SP290-201ENST00000517133 127 ntBASIC4.15□□□□□ -1.75
USHBP1Q8N6Y0 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC4.15□□□□□ -1.75
USHBP1Q8N6Y0 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC4.15□□□□□ -1.75
USHBP1Q8N6Y0 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC4.15□□□□□ -1.75
USHBP1Q8N6Y0 AL590235.2-201ENST00000602641 632 ntTSL 5 BASIC4.15□□□□□ -1.75
USHBP1Q8N6Y0 AL161629.2-201ENST00000615347 275 ntBASIC4.15□□□□□ -1.75
USHBP1Q8N6Y0 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC4.15□□□□□ -1.75
USHBP1Q8N6Y0 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC4.14□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 102.6 ms