Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 U2.16-201ENST00000613119 191 ntBASIC2.05□□□□□ -2.08
HDDC3Q8N4P3 U2.12-201ENST00000613778 191 ntBASIC2.05□□□□□ -2.08
HDDC3Q8N4P3 U2.20-201ENST00000613956 192 ntBASIC2.05□□□□□ -2.08
HDDC3Q8N4P3 U2.9-201ENST00000615427 191 ntBASIC2.05□□□□□ -2.08
HDDC3Q8N4P3 AC005296.1-201ENST00000616145 209 ntBASIC2.05□□□□□ -2.08
HDDC3Q8N4P3 U2.11-201ENST00000616345 191 ntBASIC2.05□□□□□ -2.08
HDDC3Q8N4P3 U2.2-201ENST00000616535 191 ntBASIC2.05□□□□□ -2.08
HDDC3Q8N4P3 U2.3-201ENST00000617785 191 ntBASIC2.05□□□□□ -2.08
HDDC3Q8N4P3 U2.19-201ENST00000618602 191 ntBASIC2.05□□□□□ -2.08
HDDC3Q8N4P3 RNU2-1-201ENST00000618664 191 ntBASIC2.05□□□□□ -2.08
HDDC3Q8N4P3 U2.6-201ENST00000619225 191 ntBASIC2.05□□□□□ -2.08
HDDC3Q8N4P3 U2.5-201ENST00000619465 191 ntBASIC2.05□□□□□ -2.08
HDDC3Q8N4P3 AL603755.1-201ENST00000619504 163 ntBASIC2.05□□□□□ -2.08
HDDC3Q8N4P3 U2.10-201ENST00000620268 191 ntBASIC2.05□□□□□ -2.08
HDDC3Q8N4P3 AC011155.2-201ENST00000623202 216 ntBASIC2.05□□□□□ -2.08
HDDC3Q8N4P3 AC097372.5-201ENST00000623665 376 ntBASIC2.05□□□□□ -2.08
HDDC3Q8N4P3 IL2-201ENST00000226730 1029 ntAPPRIS P1 TSL 1 (best) BASIC2.04□□□□□ -2.08
HDDC3Q8N4P3 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC2.04□□□□□ -2.08
HDDC3Q8N4P3 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC2.04□□□□□ -2.08
HDDC3Q8N4P3 MIR337-201ENST00000362281 93 ntBASIC2.04□□□□□ -2.08
HDDC3Q8N4P3 RNU6-1097P-201ENST00000363586 107 ntBASIC2.04□□□□□ -2.08
HDDC3Q8N4P3 SNORD14D-201ENST00000384390 87 ntBASIC2.04□□□□□ -2.08
HDDC3Q8N4P3 FGF7P8-201ENST00000402994 292 ntBASIC2.04□□□□□ -2.08
HDDC3Q8N4P3 HMGB3P2-201ENST00000411913 584 ntBASIC2.04□□□□□ -2.08
HDDC3Q8N4P3 MTND1P23-201ENST00000416931 372 ntBASIC2.04□□□□□ -2.08
HDDC3Q8N4P3 AL445685.2-201ENST00000422551 342 ntBASIC2.04□□□□□ -2.08
HDDC3Q8N4P3 AC027124.2-201ENST00000428249 105 ntBASIC2.04□□□□□ -2.08
HDDC3Q8N4P3 LINC00354-202ENST00000440860 376 ntTSL 2 BASIC2.04□□□□□ -2.08
HDDC3Q8N4P3 SNRPGP9-201ENST00000456025 225 ntBASIC2.04□□□□□ -2.08
HDDC3Q8N4P3 AL162395.1-201ENST00000457882 422 ntBASIC2.04□□□□□ -2.08
HDDC3Q8N4P3 RPL30P1-201ENST00000488676 339 ntBASIC2.04□□□□□ -2.08
HDDC3Q8N4P3 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC2.04□□□□□ -2.08
HDDC3Q8N4P3 PTP4A1P4-201ENST00000512479 322 ntBASIC2.04□□□□□ -2.08
HDDC3Q8N4P3 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC2.04□□□□□ -2.08
HDDC3Q8N4P3 SNORA18.6-201ENST00000516792 115 ntBASIC2.04□□□□□ -2.08
HDDC3Q8N4P3 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC2.04□□□□□ -2.08
HDDC3Q8N4P3 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC2.04□□□□□ -2.08
HDDC3Q8N4P3 MIR4781-201ENST00000585250 76 ntBASIC2.04□□□□□ -2.08
HDDC3Q8N4P3 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC2.04□□□□□ -2.08
HDDC3Q8N4P3 AL109918.3-201ENST00000603072 338 ntBASIC2.04□□□□□ -2.08
HDDC3Q8N4P3 Z84480.1-201ENST00000605131 311 ntBASIC2.04□□□□□ -2.08
HDDC3Q8N4P3 AC091931.1-201ENST00000623488 728 ntBASIC2.04□□□□□ -2.08
HDDC3Q8N4P3 SEPT14P19-203ENST00000633205 211 ntBASIC2.04□□□□□ -2.08
HDDC3Q8N4P3 ATP8A2P2-201ENST00000437678 1568 ntBASIC2.03□□□□□ -2.08
HDDC3Q8N4P3 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC2.03□□□□□ -2.08
HDDC3Q8N4P3 SNORA51.11-201ENST00000384442 131 ntBASIC2.03□□□□□ -2.08
HDDC3Q8N4P3 RNY3P10-201ENST00000384764 102 ntBASIC2.03□□□□□ -2.08
HDDC3Q8N4P3 MIR544A-201ENST00000384855 91 ntBASIC2.03□□□□□ -2.08
HDDC3Q8N4P3 MIR454-201ENST00000390180 115 ntBASIC2.03□□□□□ -2.08
HDDC3Q8N4P3 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC2.03□□□□□ -2.08
HDDC3Q8N4P3 RNA5SP465-201ENST00000391195 109 ntBASIC2.03□□□□□ -2.08
HDDC3Q8N4P3 SNORA40.18-201ENST00000391200 128 ntBASIC2.03□□□□□ -2.08
HDDC3Q8N4P3 AL356432.1-201ENST00000405809 419 ntBASIC2.03□□□□□ -2.08
HDDC3Q8N4P3 RNU2-3P-201ENST00000410144 191 ntBASIC2.03□□□□□ -2.08
HDDC3Q8N4P3 Y_RNA.597-201ENST00000410463 100 ntBASIC2.03□□□□□ -2.08
HDDC3Q8N4P3 RNU2-48P-201ENST00000410694 191 ntBASIC2.03□□□□□ -2.08
HDDC3Q8N4P3 CYCSP49-201ENST00000420810 319 ntBASIC2.03□□□□□ -2.08
HDDC3Q8N4P3 OPA1-AS1-201ENST00000433105 492 ntTSL 3 BASIC2.03□□□□□ -2.08
HDDC3Q8N4P3 NFIA-AS1-201ENST00000442027 384 ntTSL 2 BASIC2.03□□□□□ -2.08
HDDC3Q8N4P3 AC079448.1-201ENST00000449377 373 ntBASIC2.03□□□□□ -2.08
HDDC3Q8N4P3 AL122001.1-201ENST00000457027 370 ntBASIC2.03□□□□□ -2.08
HDDC3Q8N4P3 MTCYBP35-201ENST00000503630 1137 ntBASIC2.03□□□□□ -2.08
HDDC3Q8N4P3 AC091996.1-201ENST00000522274 600 ntTSL 3 BASIC2.03□□□□□ -2.08
HDDC3Q8N4P3 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC2.03□□□□□ -2.08
HDDC3Q8N4P3 AL096840.1-201ENST00000603287 93 ntBASIC2.03□□□□□ -2.08
HDDC3Q8N4P3 AC245014.2-201ENST00000603689 287 ntBASIC2.03□□□□□ -2.08
HDDC3Q8N4P3 AC246785.4-201ENST00000605374 287 ntBASIC2.03□□□□□ -2.08
HDDC3Q8N4P3 AC063943.3-201ENST00000615562 356 ntBASIC2.03□□□□□ -2.08
HDDC3Q8N4P3 AL159153.1-201ENST00000619688 317 ntBASIC2.03□□□□□ -2.08
HDDC3Q8N4P3 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC2.03□□□□□ -2.08
HDDC3Q8N4P3 ZNF355P-201ENST00000427301 3216 ntBASIC2.03□□□□□ -2.08
HDDC3Q8N4P3 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC2.03□□□□□ -2.09
HDDC3Q8N4P3 KPNA2P1-201ENST00000458289 1591 ntBASIC2.02□□□□□ -2.09
HDDC3Q8N4P3 AC009487.4-201ENST00000624969 3585 ntBASIC2.02□□□□□ -2.09
HDDC3Q8N4P3 FGF7P2-201ENST00000332473 296 ntBASIC2.02□□□□□ -2.09
HDDC3Q8N4P3 RNU6-715P-201ENST00000365204 103 ntBASIC2.02□□□□□ -2.09
HDDC3Q8N4P3 RNU6-108P-201ENST00000365558 107 ntBASIC2.02□□□□□ -2.09
HDDC3Q8N4P3 C20orf187-201ENST00000378252 446 ntTSL 2 BASIC2.02□□□□□ -2.09
HDDC3Q8N4P3 RNU11-3P-201ENST00000391111 133 ntBASIC2.02□□□□□ -2.09
HDDC3Q8N4P3 ZNF705D-201ENST00000400078 925 ntAPPRIS P1 TSL 2 BASIC2.02□□□□□ -2.09
HDDC3Q8N4P3 MIR1262-201ENST00000408276 93 ntBASIC2.02□□□□□ -2.09
HDDC3Q8N4P3 AC105271.1-202ENST00000411417 445 ntTSL 3 BASIC2.02□□□□□ -2.09
HDDC3Q8N4P3 SRIP3-201ENST00000413200 219 ntBASIC2.02□□□□□ -2.09
HDDC3Q8N4P3 CYCSP33-201ENST00000414485 327 ntBASIC2.02□□□□□ -2.09
HDDC3Q8N4P3 MTND3P17-201ENST00000416968 344 ntBASIC2.02□□□□□ -2.09
HDDC3Q8N4P3 AC108667.1-201ENST00000428618 249 ntBASIC2.02□□□□□ -2.09
HDDC3Q8N4P3 RPS15AP10-201ENST00000432472 382 ntBASIC2.02□□□□□ -2.09
HDDC3Q8N4P3 MTND2P29-201ENST00000438595 412 ntBASIC2.02□□□□□ -2.09
HDDC3Q8N4P3 AC007969.2-201ENST00000441891 191 ntBASIC2.02□□□□□ -2.09
HDDC3Q8N4P3 AL022238.1-201ENST00000442557 355 ntBASIC2.02□□□□□ -2.09
HDDC3Q8N4P3 MTND2P4-201ENST00000445034 1004 ntBASIC2.02□□□□□ -2.09
HDDC3Q8N4P3 AP000431.2-201ENST00000450653 790 ntTSL 2 BASIC2.02□□□□□ -2.09
HDDC3Q8N4P3 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC2.02□□□□□ -2.09
HDDC3Q8N4P3 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC2.02□□□□□ -2.09
HDDC3Q8N4P3 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC2.02□□□□□ -2.09
HDDC3Q8N4P3 AP005660.1-201ENST00000522972 293 ntBASIC2.02□□□□□ -2.09
HDDC3Q8N4P3 AC018630.3-201ENST00000542637 96 ntBASIC2.02□□□□□ -2.09
HDDC3Q8N4P3 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC2.02□□□□□ -2.09
HDDC3Q8N4P3 LINC01491-201ENST00000558434 505 ntTSL 3 BASIC2.02□□□□□ -2.09
HDDC3Q8N4P3 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC2.02□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 105.5 ms