Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 RNU6-628P-201ENST00000410675 107 ntBASIC4.56□□□□□ -1.68
NPAS3Q8IXF0 RNU6-1245P-201ENST00000411130 106 ntBASIC4.56□□□□□ -1.68
NPAS3Q8IXF0 CYCSP10-201ENST00000417973 294 ntBASIC4.56□□□□□ -1.68
NPAS3Q8IXF0 AL591623.2-201ENST00000449978 222 ntBASIC4.56□□□□□ -1.68
NPAS3Q8IXF0 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC4.56□□□□□ -1.68
NPAS3Q8IXF0 AL132838.2-201ENST00000492041 314 ntBASIC4.56□□□□□ -1.68
NPAS3Q8IXF0 RNA5SP49-201ENST00000516450 115 ntBASIC4.56□□□□□ -1.68
NPAS3Q8IXF0 AL355922.1-201ENST00000555624 337 ntTSL 3 BASIC4.56□□□□□ -1.68
NPAS3Q8IXF0 TVP23BP1-201ENST00000557500 617 ntBASIC4.56□□□□□ -1.68
NPAS3Q8IXF0 RN7SL600P-201ENST00000581811 299 ntBASIC4.56□□□□□ -1.68
NPAS3Q8IXF0 AC006130.2-201ENST00000586202 326 ntBASIC4.56□□□□□ -1.68
NPAS3Q8IXF0 SNORD115-40-201ENST00000606510 82 ntBASIC4.56□□□□□ -1.68
NPAS3Q8IXF0 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC4.56□□□□□ -1.68
NPAS3Q8IXF0 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC4.56□□□□□ -1.68
NPAS3Q8IXF0 AL596275.2-206ENST00000641957 626 ntBASIC4.56□□□□□ -1.68
NPAS3Q8IXF0 CEP192-203ENST00000506447 7960 ntAPPRIS P2 TSL 5 BASIC4.56□□□□□ -1.68
NPAS3Q8IXF0 AC015813.6-201ENST00000624409 5808 ntBASIC4.56□□□□□ -1.68
NPAS3Q8IXF0 GHR-209ENST00000612626 4524 ntAPPRIS P1 TSL 5 BASIC4.56□□□□□ -1.68
NPAS3Q8IXF0 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC4.56□□□□□ -1.68
NPAS3Q8IXF0 PCDH15-211ENST00000395440 3177 ntTSL 5 BASIC4.56□□□□□ -1.68
NPAS3Q8IXF0 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
NPAS3Q8IXF0 ASB5-201ENST00000296525 3031 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
NPAS3Q8IXF0 SLC44A5-201ENST00000370855 4406 ntAPPRIS P3 TSL 1 (best) BASIC4.56□□□□□ -1.68
NPAS3Q8IXF0 GHR-202ENST00000357703 4316 ntTSL 5 BASIC4.55□□□□□ -1.68
NPAS3Q8IXF0 GHR-213ENST00000622294 4312 ntTSL 5 BASIC4.55□□□□□ -1.68
NPAS3Q8IXF0 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC4.55□□□□□ -1.68
NPAS3Q8IXF0 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC4.55□□□□□ -1.68
NPAS3Q8IXF0 GABRG2-214ENST00000639111 11735 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
NPAS3Q8IXF0 SYT16-205ENST00000568344 13978 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
NPAS3Q8IXF0 ZZZ3-202ENST00000370801 4328 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
NPAS3Q8IXF0 RNU6-1249P-201ENST00000363237 111 ntBASIC4.55□□□□□ -1.68
NPAS3Q8IXF0 RNU1-83P-201ENST00000363426 164 ntBASIC4.55□□□□□ -1.68
NPAS3Q8IXF0 SNORD32A-201ENST00000364805 84 ntBASIC4.55□□□□□ -1.68
NPAS3Q8IXF0 Y_RNA.341-201ENST00000365341 102 ntBASIC4.55□□□□□ -1.68
NPAS3Q8IXF0 RNA5SP283-201ENST00000365604 119 ntBASIC4.55□□□□□ -1.68
NPAS3Q8IXF0 RNU6-1014P-201ENST00000383940 103 ntBASIC4.55□□□□□ -1.68
NPAS3Q8IXF0 RNU6-1113P-201ENST00000384348 107 ntBASIC4.55□□□□□ -1.68
NPAS3Q8IXF0 RNU6-136P-201ENST00000384663 107 ntBASIC4.55□□□□□ -1.68
NPAS3Q8IXF0 AL031003.1-201ENST00000404229 172 ntBASIC4.55□□□□□ -1.68
NPAS3Q8IXF0 AL356095.1-201ENST00000417217 199 ntBASIC4.55□□□□□ -1.68
NPAS3Q8IXF0 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC4.55□□□□□ -1.68
NPAS3Q8IXF0 RPS26P2-201ENST00000440331 348 ntBASIC4.55□□□□□ -1.68
NPAS3Q8IXF0 PGBD4P5-201ENST00000445958 426 ntBASIC4.55□□□□□ -1.68
NPAS3Q8IXF0 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC4.55□□□□□ -1.68
NPAS3Q8IXF0 MIR6867-201ENST00000610636 67 ntBASIC4.55□□□□□ -1.68
NPAS3Q8IXF0 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC4.55□□□□□ -1.68
NPAS3Q8IXF0 ADCY10-202ENST00000367851 5051 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
NPAS3Q8IXF0 OR10K1-203ENST00000641432 3775 ntAPPRIS P1 BASIC4.55□□□□□ -1.68
NPAS3Q8IXF0 IQGAP2-204ENST00000502745 3404 ntTSL 2 BASIC4.55□□□□□ -1.68
NPAS3Q8IXF0 FSBP-203ENST00000611249 2181 ntAPPRIS P1 TSL 5 BASIC4.55□□□□□ -1.68
NPAS3Q8IXF0 MAPK10-349ENST00000641767 3661 ntBASIC4.55□□□□□ -1.68
NPAS3Q8IXF0 AC019197.1-201ENST00000638199 3611 ntTSL 5 BASIC4.55□□□□□ -1.68
NPAS3Q8IXF0 INPP4B-220ENST00000513000 8831 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
NPAS3Q8IXF0 CAST-207ENST00000395813 4356 ntAPPRIS ALT2 TSL 5 BASIC4.55□□□□□ -1.68
NPAS3Q8IXF0 AC022336.2-201ENST00000568966 2538 ntBASIC4.54□□□□□ -1.68
NPAS3Q8IXF0 RIMS1-206ENST00000425662 2799 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
NPAS3Q8IXF0 CSPP1-203ENST00000519668 3715 ntAPPRIS ALT2 TSL 1 (best) BASIC4.54□□□□□ -1.68
NPAS3Q8IXF0 ZNF12-203ENST00000404360 4474 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
NPAS3Q8IXF0 MYO9A-209ENST00000564571 8111 ntAPPRIS ALT2 TSL 1 (best) BASIC4.54□□□□□ -1.68
NPAS3Q8IXF0 Y_RNA.466-201ENST00000384294 113 ntBASIC4.54□□□□□ -1.68
NPAS3Q8IXF0 MIR590-201ENST00000385008 97 ntBASIC4.54□□□□□ -1.68
NPAS3Q8IXF0 AL603914.1-201ENST00000401964 204 ntBASIC4.54□□□□□ -1.68
NPAS3Q8IXF0 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC4.54□□□□□ -1.68
NPAS3Q8IXF0 AL117339.2-201ENST00000430475 180 ntBASIC4.54□□□□□ -1.68
NPAS3Q8IXF0 TDGF1P1-201ENST00000445734 527 ntBASIC4.54□□□□□ -1.68
NPAS3Q8IXF0 ANP32BP2-201ENST00000454525 545 ntBASIC4.54□□□□□ -1.68
NPAS3Q8IXF0 AP000705.1-201ENST00000454567 350 ntBASIC4.54□□□□□ -1.68
NPAS3Q8IXF0 AC139453.2-201ENST00000487255 133 ntBASIC4.54□□□□□ -1.68
NPAS3Q8IXF0 SNORA43.2-201ENST00000516652 128 ntBASIC4.54□□□□□ -1.68
NPAS3Q8IXF0 RNA5SP54-201ENST00000516951 92 ntBASIC4.54□□□□□ -1.68
NPAS3Q8IXF0 AC026421.1-201ENST00000519101 163 ntBASIC4.54□□□□□ -1.68
NPAS3Q8IXF0 AC131055.1-201ENST00000584626 316 ntBASIC4.54□□□□□ -1.68
NPAS3Q8IXF0 C2orf91-203ENST00000615044 393 ntAPPRIS ALT2 TSL 5 BASIC4.54□□□□□ -1.68
NPAS3Q8IXF0 MALAT1.1-201ENST00000618249 95 ntBASIC4.54□□□□□ -1.68
NPAS3Q8IXF0 AC112484.5-201ENST00000624189 228 ntBASIC4.54□□□□□ -1.68
NPAS3Q8IXF0 LINC01355-201ENST00000566551 5444 ntBASIC4.54□□□□□ -1.68
NPAS3Q8IXF0 AL359693.1-201ENST00000614959 2407 ntBASIC4.54□□□□□ -1.68
NPAS3Q8IXF0 HMBOX1-202ENST00000355231 1694 ntTSL 5 BASIC4.54□□□□□ -1.68
NPAS3Q8IXF0 RNF111-212ENST00000561186 4536 ntTSL 2 BASIC4.54□□□□□ -1.68
NPAS3Q8IXF0 ANKRD34C-201ENST00000421388 4951 ntAPPRIS P1 BASIC4.54□□□□□ -1.68
NPAS3Q8IXF0 RAP1B-201ENST00000250559 13438 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
NPAS3Q8IXF0 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC4.54□□□□□ -1.68
NPAS3Q8IXF0 LARP4-202ENST00000347328 3621 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
NPAS3Q8IXF0 IQGAP2-203ENST00000396234 3376 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
NPAS3Q8IXF0 DCX-202ENST00000358070 9405 ntAPPRIS ALT1 TSL 1 (best) BASIC4.53□□□□□ -1.68
NPAS3Q8IXF0 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC4.53□□□□□ -1.68
NPAS3Q8IXF0 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC4.53□□□□□ -1.68
NPAS3Q8IXF0 AC000123.3-201ENST00000624029 4975 ntBASIC4.53□□□□□ -1.68
NPAS3Q8IXF0 RNU5F-3P-201ENST00000363767 117 ntBASIC4.53□□□□□ -1.68
NPAS3Q8IXF0 Y_RNA.245-201ENST00000364493 95 ntBASIC4.53□□□□□ -1.68
NPAS3Q8IXF0 CYP1B1-AS1-202ENST00000427168 484 ntTSL 4 BASIC4.53□□□□□ -1.68
NPAS3Q8IXF0 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC4.53□□□□□ -1.68
NPAS3Q8IXF0 SNRPGP8-201ENST00000454064 226 ntBASIC4.53□□□□□ -1.68
NPAS3Q8IXF0 RN7SL812P-201ENST00000493791 279 ntBASIC4.53□□□□□ -1.68
NPAS3Q8IXF0 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC4.53□□□□□ -1.68
NPAS3Q8IXF0 IGKV1-22-201ENST00000524313 326 ntBASIC4.53□□□□□ -1.68
NPAS3Q8IXF0 AC016256.1-201ENST00000547971 354 ntBASIC4.53□□□□□ -1.68
NPAS3Q8IXF0 MIR4429-201ENST00000580105 73 ntBASIC4.53□□□□□ -1.68
NPAS3Q8IXF0 POLR3GP1-201ENST00000594073 261 ntBASIC4.53□□□□□ -1.68
NPAS3Q8IXF0 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC4.53□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 108.4 ms