Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 AIMP1P2-201ENST00000425294 312 ntBASIC2.88□□□□□ -1.95
CCDC28AQ8IWP9 MTCO2P12-201ENST00000427426 682 ntBASIC2.88□□□□□ -1.95
CCDC28AQ8IWP9 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC2.88□□□□□ -1.95
CCDC28AQ8IWP9 AL353997.1-201ENST00000432936 108 ntBASIC2.88□□□□□ -1.95
CCDC28AQ8IWP9 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC2.88□□□□□ -1.95
CCDC28AQ8IWP9 TPT1P12-201ENST00000448968 492 ntBASIC2.88□□□□□ -1.95
CCDC28AQ8IWP9 AL353705.4-201ENST00000449661 238 ntBASIC2.88□□□□□ -1.95
CCDC28AQ8IWP9 GSTA11P-201ENST00000452866 669 ntBASIC2.88□□□□□ -1.95
CCDC28AQ8IWP9 Y_RNA.639-201ENST00000458981 102 ntBASIC2.88□□□□□ -1.95
CCDC28AQ8IWP9 RPL21P39-201ENST00000463605 483 ntBASIC2.88□□□□□ -1.95
CCDC28AQ8IWP9 AL121594.1-201ENST00000475906 575 ntBASIC2.88□□□□□ -1.95
CCDC28AQ8IWP9 AC087190.1-201ENST00000484462 480 ntBASIC2.88□□□□□ -1.95
CCDC28AQ8IWP9 AC068781.1-201ENST00000488231 618 ntBASIC2.88□□□□□ -1.95
CCDC28AQ8IWP9 RPL17P19-201ENST00000489069 552 ntBASIC2.88□□□□□ -1.95
CCDC28AQ8IWP9 AC093591.1-201ENST00000491435 481 ntBASIC2.88□□□□□ -1.95
CCDC28AQ8IWP9 RPL21P129-201ENST00000491732 478 ntBASIC2.88□□□□□ -1.95
CCDC28AQ8IWP9 RPL21P16-201ENST00000495531 483 ntBASIC2.88□□□□□ -1.95
CCDC28AQ8IWP9 RNU5F-2P-201ENST00000516066 82 ntBASIC2.88□□□□□ -1.95
CCDC28AQ8IWP9 RNU2-53P-201ENST00000516257 147 ntBASIC2.88□□□□□ -1.95
CCDC28AQ8IWP9 SNORA70.19-201ENST00000516717 90 ntBASIC2.88□□□□□ -1.95
CCDC28AQ8IWP9 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC2.88□□□□□ -1.95
CCDC28AQ8IWP9 AP000889.1-201ENST00000530968 660 ntBASIC2.88□□□□□ -1.95
CCDC28AQ8IWP9 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
CCDC28AQ8IWP9 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC2.88□□□□□ -1.95
CCDC28AQ8IWP9 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC2.88□□□□□ -1.95
CCDC28AQ8IWP9 AL080274.1-201ENST00000605565 220 ntBASIC2.88□□□□□ -1.95
CCDC28AQ8IWP9 RNU1-30P-201ENST00000606575 163 ntBASIC2.88□□□□□ -1.95
CCDC28AQ8IWP9 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC2.88□□□□□ -1.95
CCDC28AQ8IWP9 SNORD98-201ENST00000636377 67 ntBASIC2.88□□□□□ -1.95
CCDC28AQ8IWP9 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC2.88□□□□□ -1.95
CCDC28AQ8IWP9 AC009487.2-201ENST00000420969 6821 ntBASIC2.88□□□□□ -1.95
CCDC28AQ8IWP9 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC2.88□□□□□ -1.95
CCDC28AQ8IWP9 MTCO1P12-201ENST00000414273 1543 ntBASIC2.88□□□□□ -1.95
CCDC28AQ8IWP9 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC2.88□□□□□ -1.95
CCDC28AQ8IWP9 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
CCDC28AQ8IWP9 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC2.87□□□□□ -1.95
CCDC28AQ8IWP9 RNU6-490P-201ENST00000362985 107 ntBASIC2.87□□□□□ -1.95
CCDC28AQ8IWP9 RNU4-9P-201ENST00000364951 139 ntBASIC2.87□□□□□ -1.95
CCDC28AQ8IWP9 SNORD42.2-201ENST00000365570 69 ntBASIC2.87□□□□□ -1.95
CCDC28AQ8IWP9 SNORA29-201ENST00000384183 140 ntBASIC2.87□□□□□ -1.95
CCDC28AQ8IWP9 RNU6-628P-201ENST00000410675 107 ntBASIC2.87□□□□□ -1.95
CCDC28AQ8IWP9 RNU4-6P-201ENST00000410804 122 ntBASIC2.87□□□□□ -1.95
CCDC28AQ8IWP9 AL358453.1-201ENST00000422522 250 ntBASIC2.87□□□□□ -1.95
CCDC28AQ8IWP9 C4BPAP2-201ENST00000428434 478 ntBASIC2.87□□□□□ -1.95
CCDC28AQ8IWP9 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC2.87□□□□□ -1.95
CCDC28AQ8IWP9 AL445584.1-201ENST00000431451 330 ntBASIC2.87□□□□□ -1.95
CCDC28AQ8IWP9 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC2.87□□□□□ -1.95
CCDC28AQ8IWP9 RN7SKP210-201ENST00000459176 261 ntBASIC2.87□□□□□ -1.95
CCDC28AQ8IWP9 MIR2053-201ENST00000459295 91 ntBASIC2.87□□□□□ -1.95
CCDC28AQ8IWP9 RPL23AP67-201ENST00000465341 474 ntBASIC2.87□□□□□ -1.95
CCDC28AQ8IWP9 RPS27AP9-201ENST00000477681 438 ntBASIC2.87□□□□□ -1.95
CCDC28AQ8IWP9 AC090525.1-201ENST00000479116 478 ntBASIC2.87□□□□□ -1.95
CCDC28AQ8IWP9 RPL30P10-201ENST00000488148 337 ntBASIC2.87□□□□□ -1.95
CCDC28AQ8IWP9 HMGB1P35-201ENST00000503360 598 ntBASIC2.87□□□□□ -1.95
CCDC28AQ8IWP9 RNU6-976P-201ENST00000516086 111 ntBASIC2.87□□□□□ -1.95
CCDC28AQ8IWP9 RNU6-567P-201ENST00000516746 107 ntBASIC2.87□□□□□ -1.95
CCDC28AQ8IWP9 SCARNA3-201ENST00000517097 143 ntBASIC2.87□□□□□ -1.95
CCDC28AQ8IWP9 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC2.87□□□□□ -1.95
CCDC28AQ8IWP9 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC2.87□□□□□ -1.95
CCDC28AQ8IWP9 AC007991.1-201ENST00000522680 631 ntBASIC2.87□□□□□ -1.95
CCDC28AQ8IWP9 COX6CP5-201ENST00000527162 228 ntBASIC2.87□□□□□ -1.95
CCDC28AQ8IWP9 AL590705.4-201ENST00000532209 134 ntBASIC2.87□□□□□ -1.95
CCDC28AQ8IWP9 AP000777.1-201ENST00000541495 355 ntTSL 3 BASIC2.87□□□□□ -1.95
CCDC28AQ8IWP9 MIR3199-1-201ENST00000582434 88 ntBASIC2.87□□□□□ -1.95
CCDC28AQ8IWP9 B3GNTL1P2-201ENST00000603673 288 ntBASIC2.87□□□□□ -1.95
CCDC28AQ8IWP9 SCARNA4-201ENST00000629045 128 ntBASIC2.87□□□□□ -1.95
CCDC28AQ8IWP9 AL450472.1-202ENST00000637286 180 ntBASIC2.87□□□□□ -1.95
CCDC28AQ8IWP9 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC2.87□□□□□ -1.95
CCDC28AQ8IWP9 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC2.87□□□□□ -1.95
CCDC28AQ8IWP9 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
CCDC28AQ8IWP9 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC2.86□□□□□ -1.95
CCDC28AQ8IWP9 Y_RNA.197-201ENST00000364004 102 ntBASIC2.86□□□□□ -1.95
CCDC28AQ8IWP9 RNA5SP130-201ENST00000364431 114 ntBASIC2.86□□□□□ -1.95
CCDC28AQ8IWP9 Y_RNA.394-201ENST00000383942 103 ntBASIC2.86□□□□□ -1.95
CCDC28AQ8IWP9 CBX3P9-201ENST00000402326 552 ntBASIC2.86□□□□□ -1.95
CCDC28AQ8IWP9 RPL19P1-201ENST00000411635 428 ntBASIC2.86□□□□□ -1.95
CCDC28AQ8IWP9 AL513477.1-202ENST00000417061 214 ntBASIC2.86□□□□□ -1.95
CCDC28AQ8IWP9 AC008267.5-201ENST00000424928 265 ntBASIC2.86□□□□□ -1.95
CCDC28AQ8IWP9 TBCAP1-201ENST00000436520 327 ntBASIC2.86□□□□□ -1.95
CCDC28AQ8IWP9 AC007677.1-201ENST00000445757 515 ntBASIC2.86□□□□□ -1.95
CCDC28AQ8IWP9 RNA5SP164-201ENST00000516533 110 ntBASIC2.86□□□□□ -1.95
CCDC28AQ8IWP9 SNORA31.16-201ENST00000516773 139 ntBASIC2.86□□□□□ -1.95
CCDC28AQ8IWP9 SCARNA20.6-201ENST00000517251 106 ntBASIC2.86□□□□□ -1.95
CCDC28AQ8IWP9 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC2.86□□□□□ -1.95
CCDC28AQ8IWP9 AC026333.2-201ENST00000542164 106 ntBASIC2.86□□□□□ -1.95
CCDC28AQ8IWP9 SUB1P3-201ENST00000564581 315 ntBASIC2.86□□□□□ -1.95
CCDC28AQ8IWP9 MIR5701-3-201ENST00000578890 82 ntBASIC2.86□□□□□ -1.95
CCDC28AQ8IWP9 MIR5701-1-201ENST00000585138 82 ntBASIC2.86□□□□□ -1.95
CCDC28AQ8IWP9 AC006130.2-201ENST00000586202 326 ntBASIC2.86□□□□□ -1.95
CCDC28AQ8IWP9 AL034555.1-201ENST00000604816 211 ntBASIC2.86□□□□□ -1.95
CCDC28AQ8IWP9 RPL23AP88-201ENST00000605759 454 ntBASIC2.86□□□□□ -1.95
CCDC28AQ8IWP9 SNORA62.6-201ENST00000606322 83 ntBASIC2.86□□□□□ -1.95
CCDC28AQ8IWP9 MIR5701-2-201ENST00000615634 82 ntBASIC2.86□□□□□ -1.95
CCDC28AQ8IWP9 YWHAEP7-201ENST00000617508 639 ntTSL 3 BASIC2.86□□□□□ -1.95
CCDC28AQ8IWP9 CCL14-203ENST00000620991 426 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
CCDC28AQ8IWP9 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC2.86□□□□□ -1.95
CCDC28AQ8IWP9 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC2.86□□□□□ -1.95
CCDC28AQ8IWP9 AC080128.1-201ENST00000474389 1917 ntBASIC2.85□□□□□ -1.95
CCDC28AQ8IWP9 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
CCDC28AQ8IWP9 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 107.9 ms