Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC2.55□□□□□ -2
NPHP3Q7Z494 RNU7-63P-201ENST00000459054 62 ntBASIC2.55□□□□□ -2
NPHP3Q7Z494 AC009646.1-201ENST00000510455 318 ntBASIC2.55□□□□□ -2
NPHP3Q7Z494 AC107393.1-201ENST00000512403 346 ntBASIC2.55□□□□□ -2
NPHP3Q7Z494 AC112206.3-201ENST00000514578 389 ntBASIC2.55□□□□□ -2
NPHP3Q7Z494 AP005435.4-201ENST00000529514 284 ntBASIC2.55□□□□□ -2
NPHP3Q7Z494 AC016957.1-201ENST00000534895 309 ntBASIC2.55□□□□□ -2
NPHP3Q7Z494 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC2.55□□□□□ -2
NPHP3Q7Z494 AC091152.3-201ENST00000604227 325 ntBASIC2.55□□□□□ -2
NPHP3Q7Z494 AL354950.2-201ENST00000617939 290 ntBASIC2.55□□□□□ -2
NPHP3Q7Z494 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
NPHP3Q7Z494 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
NPHP3Q7Z494 RNA5SP37-201ENST00000365420 130 ntBASIC2.54□□□□□ -2
NPHP3Q7Z494 Y_RNA.372-201ENST00000365599 102 ntBASIC2.54□□□□□ -2
NPHP3Q7Z494 RNU6-395P-201ENST00000365662 106 ntBASIC2.54□□□□□ -2
NPHP3Q7Z494 Y_RNA.466-201ENST00000384294 113 ntBASIC2.54□□□□□ -2
NPHP3Q7Z494 RNU6-166P-201ENST00000384371 107 ntBASIC2.54□□□□□ -2
NPHP3Q7Z494 Y_RNA.516-201ENST00000384541 124 ntBASIC2.54□□□□□ -2
NPHP3Q7Z494 RNU6-19P-201ENST00000384718 107 ntBASIC2.54□□□□□ -2
NPHP3Q7Z494 RNU6-220P-201ENST00000390919 107 ntBASIC2.54□□□□□ -2
NPHP3Q7Z494 SNORA40C-201ENST00000391285 128 ntBASIC2.54□□□□□ -2
NPHP3Q7Z494 MIR1294-201ENST00000408503 142 ntBASIC2.54□□□□□ -2
NPHP3Q7Z494 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC2.54□□□□□ -2
NPHP3Q7Z494 AC092001.1-201ENST00000453012 261 ntBASIC2.54□□□□□ -2
NPHP3Q7Z494 AL583843.1-201ENST00000456070 346 ntBASIC2.54□□□□□ -2
NPHP3Q7Z494 AL356010.1-201ENST00000456364 102 ntBASIC2.54□□□□□ -2
NPHP3Q7Z494 SRRM1P2-201ENST00000464531 1192 ntBASIC2.54□□□□□ -2
NPHP3Q7Z494 AC082651.2-201ENST00000496833 166 ntBASIC2.54□□□□□ -2
NPHP3Q7Z494 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC2.54□□□□□ -2
NPHP3Q7Z494 RNU6-581P-201ENST00000516214 105 ntBASIC2.54□□□□□ -2
NPHP3Q7Z494 RNU6-506P-201ENST00000516553 94 ntBASIC2.54□□□□□ -2
NPHP3Q7Z494 RNU6-314P-201ENST00000516574 104 ntBASIC2.54□□□□□ -2
NPHP3Q7Z494 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC2.54□□□□□ -2
NPHP3Q7Z494 AC022360.2-201ENST00000522390 456 ntTSL 3 BASIC2.54□□□□□ -2
NPHP3Q7Z494 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC2.54□□□□□ -2
NPHP3Q7Z494 AC023824.2-201ENST00000566185 400 ntBASIC2.54□□□□□ -2
NPHP3Q7Z494 EIF1P4-201ENST00000572664 335 ntBASIC2.54□□□□□ -2
NPHP3Q7Z494 MIR4782-201ENST00000577987 79 ntBASIC2.54□□□□□ -2
NPHP3Q7Z494 MIR4446-201ENST00000578505 67 ntBASIC2.54□□□□□ -2
NPHP3Q7Z494 MIR548AC-201ENST00000585049 88 ntBASIC2.54□□□□□ -2
NPHP3Q7Z494 AC090227.2-201ENST00000591105 340 ntTSL 5 BASIC2.54□□□□□ -2
NPHP3Q7Z494 AC008121.1-201ENST00000603244 268 ntBASIC2.54□□□□□ -2
NPHP3Q7Z494 AL138889.2-201ENST00000603883 242 ntBASIC2.54□□□□□ -2
NPHP3Q7Z494 AC008945.2-201ENST00000606056 604 ntBASIC2.54□□□□□ -2
NPHP3Q7Z494 MIR8081-201ENST00000611533 95 ntBASIC2.54□□□□□ -2
NPHP3Q7Z494 HMGB1P24-202ENST00000615653 685 ntBASIC2.54□□□□□ -2
NPHP3Q7Z494 AL359880.1-201ENST00000621879 266 ntBASIC2.54□□□□□ -2
NPHP3Q7Z494 AC005609.4-201ENST00000625071 447 ntBASIC2.54□□□□□ -2
NPHP3Q7Z494 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC2.54□□□□□ -2
NPHP3Q7Z494 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC2.54□□□□□ -2
NPHP3Q7Z494 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.54□□□□□ -2
NPHP3Q7Z494 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
NPHP3Q7Z494 AC093536.2-201ENST00000565257 1406 ntBASIC2.53□□□□□ -2
NPHP3Q7Z494 RNU6-996P-201ENST00000365438 107 ntBASIC2.53□□□□□ -2
NPHP3Q7Z494 RNU6-1179P-201ENST00000384667 107 ntBASIC2.53□□□□□ -2
NPHP3Q7Z494 RNU6-903P-201ENST00000391270 109 ntBASIC2.53□□□□□ -2
NPHP3Q7Z494 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC2.53□□□□□ -2
NPHP3Q7Z494 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC2.53□□□□□ -2
NPHP3Q7Z494 PTGES3P4-201ENST00000426243 356 ntBASIC2.53□□□□□ -2
NPHP3Q7Z494 PSPHP1-201ENST00000450062 261 ntBASIC2.53□□□□□ -2
NPHP3Q7Z494 LINC01691-201ENST00000450546 426 ntTSL 5 BASIC2.53□□□□□ -2
NPHP3Q7Z494 AC105417.1-201ENST00000514691 285 ntBASIC2.53□□□□□ -2
NPHP3Q7Z494 RNU6-1178P-201ENST00000516674 107 ntBASIC2.53□□□□□ -2
NPHP3Q7Z494 AP001893.2-201ENST00000526949 202 ntBASIC2.53□□□□□ -2
NPHP3Q7Z494 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC2.53□□□□□ -2
NPHP3Q7Z494 AC025678.1-201ENST00000567861 338 ntBASIC2.53□□□□□ -2
NPHP3Q7Z494 MIR4765-201ENST00000585007 77 ntBASIC2.53□□□□□ -2
NPHP3Q7Z494 AL121917.1-203ENST00000605534 577 ntBASIC2.53□□□□□ -2
NPHP3Q7Z494 AL021997.1-201ENST00000605757 193 ntBASIC2.53□□□□□ -2
NPHP3Q7Z494 AC098679.4-201ENST00000624241 654 ntBASIC2.53□□□□□ -2
NPHP3Q7Z494 MIR7157-201ENST00000635801 60 ntBASIC2.53□□□□□ -2
NPHP3Q7Z494 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC2.53□□□□□ -2
NPHP3Q7Z494 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC2.53□□□□□ -2.01
NPHP3Q7Z494 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC2.53□□□□□ -2.01
NPHP3Q7Z494 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC2.53□□□□□ -2.01
NPHP3Q7Z494 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.52□□□□□ -2.01
NPHP3Q7Z494 RNU6-898P-201ENST00000365627 104 ntBASIC2.52□□□□□ -2.01
NPHP3Q7Z494 RNU6-1215P-201ENST00000384441 102 ntBASIC2.52□□□□□ -2.01
NPHP3Q7Z494 EIF1AXP1-201ENST00000419267 435 ntBASIC2.52□□□□□ -2.01
NPHP3Q7Z494 FABP5P14-201ENST00000437273 393 ntBASIC2.52□□□□□ -2.01
NPHP3Q7Z494 AL078601.1-201ENST00000444542 271 ntBASIC2.52□□□□□ -2.01
NPHP3Q7Z494 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC2.52□□□□□ -2.01
NPHP3Q7Z494 OARD1-209ENST00000471367 401 ntTSL 2 BASIC2.52□□□□□ -2.01
NPHP3Q7Z494 AC019235.1-201ENST00000503847 207 ntBASIC2.52□□□□□ -2.01
NPHP3Q7Z494 LINC02377-202ENST00000505436 523 ntTSL 5 BASIC2.52□□□□□ -2.01
NPHP3Q7Z494 MTND3P25-201ENST00000509243 135 ntBASIC2.52□□□□□ -2.01
NPHP3Q7Z494 Y_RNA.704-201ENST00000516851 102 ntBASIC2.52□□□□□ -2.01
NPHP3Q7Z494 SCARNA3-201ENST00000517097 143 ntBASIC2.52□□□□□ -2.01
NPHP3Q7Z494 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC2.52□□□□□ -2.01
NPHP3Q7Z494 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC2.52□□□□□ -2.01
NPHP3Q7Z494 AC104383.1-201ENST00000530297 370 ntBASIC2.52□□□□□ -2.01
NPHP3Q7Z494 MIR5583-1-201ENST00000580941 59 ntBASIC2.52□□□□□ -2.01
NPHP3Q7Z494 MIR5194-201ENST00000582634 120 ntBASIC2.52□□□□□ -2.01
NPHP3Q7Z494 AC073539.2-201ENST00000597113 165 ntBASIC2.52□□□□□ -2.01
NPHP3Q7Z494 AP001330.5-201ENST00000607176 411 ntBASIC2.52□□□□□ -2.01
NPHP3Q7Z494 AC073534.2-201ENST00000620377 381 ntBASIC2.52□□□□□ -2.01
NPHP3Q7Z494 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC2.52□□□□□ -2.01
NPHP3Q7Z494 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.52□□□□□ -2.01
NPHP3Q7Z494 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC2.51□□□□□ -2.01
NPHP3Q7Z494 RNU6-552P-201ENST00000362869 119 ntBASIC2.51□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 113.4 ms