Protein–RNA interactions for Protein: Q53F19

NCBP3, Nuclear cap-binding protein subunit 3, humanhuman

Known RBP Predictions only

Length 620 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NCBP3Q53F19 RNASEL-202ENST00000539397 4046 ntTSL 2 BASIC7.14□□□□□ -1.27
NCBP3Q53F19 HSPA13-201ENST00000285667 3986 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
NCBP3Q53F19 CPSF2-201ENST00000298875 13035 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
NCBP3Q53F19 ACADSB-201ENST00000358776 5859 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
NCBP3Q53F19 RNU1-22P-201ENST00000363334 158 ntBASIC7.13□□□□□ -1.27
NCBP3Q53F19 Y_RNA.298-201ENST00000364960 107 ntBASIC7.13□□□□□ -1.27
NCBP3Q53F19 SNORD56.6-201ENST00000384569 71 ntBASIC7.13□□□□□ -1.27
NCBP3Q53F19 RNU6-816P-201ENST00000390914 107 ntBASIC7.13□□□□□ -1.27
NCBP3Q53F19 RNU6-1268P-201ENST00000391214 107 ntBASIC7.13□□□□□ -1.27
NCBP3Q53F19 RNU6-1239P-201ENST00000391310 107 ntBASIC7.13□□□□□ -1.27
NCBP3Q53F19 RNU2-37P-201ENST00000410695 177 ntBASIC7.13□□□□□ -1.27
NCBP3Q53F19 AL592431.1-201ENST00000451090 317 ntTSL 3 BASIC7.13□□□□□ -1.27
NCBP3Q53F19 BX546450.1-201ENST00000454307 482 ntTSL 2 BASIC7.13□□□□□ -1.27
NCBP3Q53F19 RNU6-857P-201ENST00000515893 110 ntBASIC7.13□□□□□ -1.27
NCBP3Q53F19 IGKV2OR2-8-201ENST00000558710 300 ntBASIC7.13□□□□□ -1.27
NCBP3Q53F19 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC7.13□□□□□ -1.27
NCBP3Q53F19 AC233702.9-201ENST00000581528 203 ntBASIC7.13□□□□□ -1.27
NCBP3Q53F19 IGKV2OR2-2-201ENST00000605025 300 ntBASIC7.13□□□□□ -1.27
NCBP3Q53F19 MIR6768-201ENST00000610734 72 ntBASIC7.13□□□□□ -1.27
NCBP3Q53F19 AC244107.2-201ENST00000611773 76 ntBASIC7.13□□□□□ -1.27
NCBP3Q53F19 MIR6826-201ENST00000617808 98 ntBASIC7.13□□□□□ -1.27
NCBP3Q53F19 MIR376A2-201ENST00000636782 80 ntBASIC7.13□□□□□ -1.27
NCBP3Q53F19 PRR14L-201ENST00000327423 10826 ntAPPRIS P2 TSL 5 BASIC7.13□□□□□ -1.27
NCBP3Q53F19 SCARNA15-201ENST00000607520 4325 ntBASIC7.13□□□□□ -1.27
NCBP3Q53F19 ZMAT1-201ENST00000372782 3185 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
NCBP3Q53F19 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC7.13□□□□□ -1.27
NCBP3Q53F19 VCAN-201ENST00000265077 12625 ntAPPRIS P3 TSL 1 (best) BASIC7.13□□□□□ -1.27
NCBP3Q53F19 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC7.13□□□□□ -1.27
NCBP3Q53F19 CKAP5-202ENST00000354558 6428 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
NCBP3Q53F19 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
NCBP3Q53F19 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC7.12□□□□□ -1.27
NCBP3Q53F19 GABRG2-203ENST00000414552 3927 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
NCBP3Q53F19 PCGF5-205ENST00000614189 7037 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
NCBP3Q53F19 STON1-GTF2A1L-203ENST00000402114 3790 ntTSL 2 BASIC7.12□□□□□ -1.27
NCBP3Q53F19 FAM196B-201ENST00000377365 2999 ntAPPRIS P1 TSL 2 BASIC7.12□□□□□ -1.27
NCBP3Q53F19 A2MP1-204ENST00000566278 4130 ntBASIC7.12□□□□□ -1.27
NCBP3Q53F19 DCX-202ENST00000358070 9405 ntAPPRIS ALT1 TSL 1 (best) BASIC7.12□□□□□ -1.27
NCBP3Q53F19 SLMAP-208ENST00000449503 4027 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
NCBP3Q53F19 U8.17-201ENST00000391292 132 ntBASIC7.12□□□□□ -1.27
NCBP3Q53F19 Y_RNA.621-201ENST00000411065 96 ntBASIC7.12□□□□□ -1.27
NCBP3Q53F19 SPRY4-AS1-205ENST00000514303 152 ntTSL 3 BASIC7.12□□□□□ -1.27
NCBP3Q53F19 RNU6ATAC12P-201ENST00000516542 115 ntBASIC7.12□□□□□ -1.27
NCBP3Q53F19 AC011444.3-201ENST00000588342 325 ntTSL 3 BASIC7.12□□□□□ -1.27
NCBP3Q53F19 HOTTIP_4.1-201ENST00000618195 165 ntBASIC7.12□□□□□ -1.27
NCBP3Q53F19 AC005005.4-201ENST00000623789 16698 ntBASIC7.12□□□□□ -1.27
NCBP3Q53F19 PRRC1-201ENST00000296666 4699 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
NCBP3Q53F19 ZEB1-205ENST00000446923 6267 ntAPPRIS ALT2 TSL 5 BASIC7.12□□□□□ -1.27
NCBP3Q53F19 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
NCBP3Q53F19 TLR2-201ENST00000260010 4200 ntAPPRIS P1 BASIC7.12□□□□□ -1.27
NCBP3Q53F19 SLC1A3-202ENST00000381918 3652 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
NCBP3Q53F19 PDE5A-203ENST00000394439 6770 ntAPPRIS ALT2 TSL 5 BASIC7.12□□□□□ -1.27
NCBP3Q53F19 SYNJ2BP-201ENST00000256366 7015 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
NCBP3Q53F19 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
NCBP3Q53F19 DDX58-201ENST00000379868 4089 ntTSL 5 BASIC7.11□□□□□ -1.27
NCBP3Q53F19 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
NCBP3Q53F19 OR6B1-202ENST00000641698 5153 ntAPPRIS P1 BASIC7.11□□□□□ -1.27
NCBP3Q53F19 RNA5SP335-201ENST00000363817 110 ntBASIC7.11□□□□□ -1.27
NCBP3Q53F19 RPS29P21-201ENST00000496272 170 ntBASIC7.11□□□□□ -1.27
NCBP3Q53F19 AC011389.1-203ENST00000513790 573 ntTSL 4 BASIC7.11□□□□□ -1.27
NCBP3Q53F19 RNU7-172P-201ENST00000517125 64 ntBASIC7.11□□□□□ -1.27
NCBP3Q53F19 AC068657.1-201ENST00000520807 306 ntBASIC7.11□□□□□ -1.27
NCBP3Q53F19 MIR8080-201ENST00000622224 89 ntBASIC7.11□□□□□ -1.27
NCBP3Q53F19 AC011944.2-201ENST00000624440 683 ntBASIC7.11□□□□□ -1.27
NCBP3Q53F19 AL049767.1-202ENST00000637826 242 ntBASIC7.11□□□□□ -1.27
NCBP3Q53F19 CTAGE5-219ENST00000640607 4239 ntAPPRIS P5 TSL 1 (best) BASIC7.11□□□□□ -1.27
NCBP3Q53F19 AC008691.1-207ENST00000636819 4154 ntTSL 5 BASIC7.11□□□□□ -1.27
NCBP3Q53F19 ZNF33A-203ENST00000432900 3994 ntAPPRIS ALT2 TSL 1 (best) BASIC7.11□□□□□ -1.27
NCBP3Q53F19 LRRC37A-203ENST00000496930 3860 ntTSL 2 BASIC7.11□□□□□ -1.27
NCBP3Q53F19 DOPEY1-201ENST00000237163 7995 ntAPPRIS ALT1 TSL 5 BASIC7.11□□□□□ -1.27
NCBP3Q53F19 PTPRD-202ENST00000356435 9472 ntAPPRIS P1 TSL 5 BASIC7.11□□□□□ -1.27
NCBP3Q53F19 NTRK3-205ENST00000394480 19984 ntAPPRIS P3 TSL 5 BASIC7.1□□□□□ -1.27
NCBP3Q53F19 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
NCBP3Q53F19 AGO3-203ENST00000373191 19687 ntAPPRIS P1 TSL 2 BASIC7.1□□□□□ -1.27
NCBP3Q53F19 SLC10A7-203ENST00000432059 3747 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
NCBP3Q53F19 EXOC1-201ENST00000346134 3357 ntAPPRIS P4 TSL 2 BASIC7.1□□□□□ -1.27
NCBP3Q53F19 AC010889.1-201ENST00000566193 2666 ntBASIC7.1□□□□□ -1.27
NCBP3Q53F19 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
NCBP3Q53F19 AC010680.1-201ENST00000590024 3590 ntBASIC7.1□□□□□ -1.27
NCBP3Q53F19 MYBPC1-205ENST00000536007 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC7.1□□□□□ -1.27
NCBP3Q53F19 CEP295-206ENST00000531700 2890 ntAPPRIS ALT2 TSL 2 BASIC7.1□□□□□ -1.27
NCBP3Q53F19 MIR133B-201ENST00000362210 119 ntBASIC7.1□□□□□ -1.27
NCBP3Q53F19 RNA5SP319-201ENST00000362768 119 ntBASIC7.1□□□□□ -1.27
NCBP3Q53F19 Y_RNA.313-201ENST00000365095 103 ntBASIC7.1□□□□□ -1.27
NCBP3Q53F19 HSPE1P26-201ENST00000405341 275 ntBASIC7.1□□□□□ -1.27
NCBP3Q53F19 MIR1912-201ENST00000410389 80 ntBASIC7.1□□□□□ -1.27
NCBP3Q53F19 AL513477.1-202ENST00000417061 214 ntBASIC7.1□□□□□ -1.27
NCBP3Q53F19 FO393401.1-201ENST00000453914 600 ntTSL 3 BASIC7.1□□□□□ -1.27
NCBP3Q53F19 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC7.1□□□□□ -1.27
NCBP3Q53F19 AC126177.5-201ENST00000549599 178 ntBASIC7.1□□□□□ -1.27
NCBP3Q53F19 AC015845.1-202ENST00000580184 242 ntTSL 3 BASIC7.1□□□□□ -1.27
NCBP3Q53F19 MIR5197-201ENST00000583721 112 ntBASIC7.1□□□□□ -1.27
NCBP3Q53F19 AC013412.1-201ENST00000610687 192 ntBASIC7.1□□□□□ -1.27
NCBP3Q53F19 EPB41L2-226ENST00000530757 4360 ntTSL 2 BASIC7.1□□□□□ -1.27
NCBP3Q53F19 CCDC169-204ENST00000379864 5944 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
NCBP3Q53F19 PTBP3-207ENST00000458258 7995 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
NCBP3Q53F19 SLFN5-201ENST00000299977 10591 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
NCBP3Q53F19 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC7.1□□□□□ -1.27
NCBP3Q53F19 PARP8-212ENST00000505697 2747 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
NCBP3Q53F19 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC7.09□□□□□ -1.27
NCBP3Q53F19 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC7.09□□□□□ -1.27
Retrieved 100 of 98,524 protein–RNA pairs in 442.8 ms