Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AC093899.1-201ENST00000457984 376 ntBASIC0.97□□□□□ -2.25
CCDC88AQ3V6T2 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC0.97□□□□□ -2.25
CCDC88AQ3V6T2 RNU5F-2P-201ENST00000516066 82 ntBASIC0.97□□□□□ -2.25
CCDC88AQ3V6T2 RNU6-229P-201ENST00000516614 102 ntBASIC0.97□□□□□ -2.25
CCDC88AQ3V6T2 UBE2Q2P8-201ENST00000560644 102 ntBASIC0.97□□□□□ -2.25
CCDC88AQ3V6T2 NDUFA8P1-201ENST00000605525 367 ntBASIC0.97□□□□□ -2.25
CCDC88AQ3V6T2 AC090186.1-201ENST00000605991 572 ntBASIC0.97□□□□□ -2.25
CCDC88AQ3V6T2 AP003476.1-201ENST00000623984 516 ntBASIC0.97□□□□□ -2.25
CCDC88AQ3V6T2 AC099654.9-201ENST00000637055 678 ntBASIC0.97□□□□□ -2.25
CCDC88AQ3V6T2 MTND5P42-201ENST00000637720 498 ntBASIC0.97□□□□□ -2.25
CCDC88AQ3V6T2 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC0.96□□□□□ -2.26
CCDC88AQ3V6T2 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC0.96□□□□□ -2.26
CCDC88AQ3V6T2 SNORA4.3-201ENST00000365564 137 ntBASIC0.96□□□□□ -2.26
CCDC88AQ3V6T2 MIR29B2-201ENST00000385055 81 ntBASIC0.96□□□□□ -2.26
CCDC88AQ3V6T2 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC0.96□□□□□ -2.26
CCDC88AQ3V6T2 CST2P1-201ENST00000425770 87 ntBASIC0.96□□□□□ -2.26
CCDC88AQ3V6T2 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC0.96□□□□□ -2.26
CCDC88AQ3V6T2 AC003071.1-201ENST00000451219 789 ntBASIC0.96□□□□□ -2.26
CCDC88AQ3V6T2 RPS23P4-201ENST00000487908 423 ntBASIC0.96□□□□□ -2.26
CCDC88AQ3V6T2 AC079140.2-201ENST00000506193 142 ntBASIC0.96□□□□□ -2.26
CCDC88AQ3V6T2 AC009646.1-201ENST00000510455 318 ntBASIC0.96□□□□□ -2.26
CCDC88AQ3V6T2 AC109445.1-201ENST00000512356 383 ntBASIC0.96□□□□□ -2.26
CCDC88AQ3V6T2 ZNF706-202ENST00000517844 604 ntAPPRIS P1 TSL 3 BASIC0.96□□□□□ -2.26
CCDC88AQ3V6T2 LINC01493-203ENST00000534756 509 ntTSL 3 BASIC0.96□□□□□ -2.26
CCDC88AQ3V6T2 AC012593.1-213ENST00000587255 510 ntTSL 5 BASIC0.96□□□□□ -2.26
CCDC88AQ3V6T2 AL138889.2-201ENST00000603883 242 ntBASIC0.96□□□□□ -2.26
CCDC88AQ3V6T2 MIR15A-201ENST00000607334 83 ntBASIC0.96□□□□□ -2.26
CCDC88AQ3V6T2 DLEU1_2.1-201ENST00000617920 342 ntBASIC0.96□□□□□ -2.26
CCDC88AQ3V6T2 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC0.96□□□□□ -2.26
CCDC88AQ3V6T2 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC0.96□□□□□ -2.26
CCDC88AQ3V6T2 RNU6-462P-201ENST00000362659 105 ntBASIC0.95□□□□□ -2.26
CCDC88AQ3V6T2 RNU1-23P-201ENST00000363361 144 ntBASIC0.95□□□□□ -2.26
CCDC88AQ3V6T2 RNU6-777P-201ENST00000364265 104 ntBASIC0.95□□□□□ -2.26
CCDC88AQ3V6T2 Y_RNA.472-201ENST00000384322 102 ntBASIC0.95□□□□□ -2.26
CCDC88AQ3V6T2 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC0.95□□□□□ -2.26
CCDC88AQ3V6T2 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC0.95□□□□□ -2.26
CCDC88AQ3V6T2 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC0.95□□□□□ -2.26
CCDC88AQ3V6T2 AC113347.3-201ENST00000509113 148 ntBASIC0.95□□□□□ -2.26
CCDC88AQ3V6T2 SMIM18-201ENST00000517349 905 ntAPPRIS P1 TSL 2 BASIC0.95□□□□□ -2.26
CCDC88AQ3V6T2 AC024060.1-201ENST00000607052 494 ntBASIC0.95□□□□□ -2.26
CCDC88AQ3V6T2 AC022202.1-201ENST00000613515 211 ntBASIC0.95□□□□□ -2.26
CCDC88AQ3V6T2 Y_RNA.68-201ENST00000362881 102 ntBASIC0.95□□□□□ -2.26
CCDC88AQ3V6T2 RNU6-395P-201ENST00000365662 106 ntBASIC0.95□□□□□ -2.26
CCDC88AQ3V6T2 RNU6-338P-201ENST00000383888 105 ntBASIC0.95□□□□□ -2.26
CCDC88AQ3V6T2 Y_RNA.458-201ENST00000384240 102 ntBASIC0.95□□□□□ -2.26
CCDC88AQ3V6T2 AL365338.1-201ENST00000422282 858 ntBASIC0.95□□□□□ -2.26
CCDC88AQ3V6T2 AL353777.1-201ENST00000425552 326 ntBASIC0.95□□□□□ -2.26
CCDC88AQ3V6T2 RPL30P1-201ENST00000488676 339 ntBASIC0.95□□□□□ -2.26
CCDC88AQ3V6T2 LINC02066-201ENST00000492731 580 ntTSL 4 BASIC0.95□□□□□ -2.26
CCDC88AQ3V6T2 AC108935.1-201ENST00000504874 518 ntTSL 2 BASIC0.95□□□□□ -2.26
CCDC88AQ3V6T2 RNU2-53P-201ENST00000516257 147 ntBASIC0.95□□□□□ -2.26
CCDC88AQ3V6T2 Y_RNA.689-201ENST00000516589 107 ntBASIC0.95□□□□□ -2.26
CCDC88AQ3V6T2 RAB11AP2-201ENST00000545905 639 ntBASIC0.95□□□□□ -2.26
CCDC88AQ3V6T2 LINC02311-201ENST00000556144 383 ntTSL 3 BASIC0.95□□□□□ -2.26
CCDC88AQ3V6T2 LINC01899-203ENST00000584810 337 ntTSL 2 BASIC0.95□□□□□ -2.26
CCDC88AQ3V6T2 AL353778.1-201ENST00000603149 408 ntBASIC0.95□□□□□ -2.26
CCDC88AQ3V6T2 AC112220.2-201ENST00000605513 533 ntBASIC0.95□□□□□ -2.26
CCDC88AQ3V6T2 AL031775.1-201ENST00000607014 887 ntBASIC0.95□□□□□ -2.26
CCDC88AQ3V6T2 AC243829.6-201ENST00000612652 106 ntBASIC0.95□□□□□ -2.26
CCDC88AQ3V6T2 AL359547.2-201ENST00000615810 418 ntBASIC0.95□□□□□ -2.26
CCDC88AQ3V6T2 AL356596.1-201ENST00000624230 379 ntBASIC0.95□□□□□ -2.26
CCDC88AQ3V6T2 AL589743.1-201ENST00000551932 2712 ntBASIC0.94□□□□□ -2.26
CCDC88AQ3V6T2 Y_RNA.623-201ENST00000411128 95 ntBASIC0.94□□□□□ -2.26
CCDC88AQ3V6T2 AC013262.1-201ENST00000426710 252 ntBASIC0.94□□□□□ -2.26
CCDC88AQ3V6T2 AC104651.1-201ENST00000427559 735 ntBASIC0.94□□□□□ -2.26
CCDC88AQ3V6T2 AC098862.1-201ENST00000504991 413 ntBASIC0.94□□□□□ -2.26
CCDC88AQ3V6T2 CYCSP23-201ENST00000519781 313 ntBASIC0.94□□□□□ -2.26
CCDC88AQ3V6T2 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC0.94□□□□□ -2.26
CCDC88AQ3V6T2 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC0.94□□□□□ -2.26
CCDC88AQ3V6T2 MIR4711-201ENST00000578274 70 ntBASIC0.94□□□□□ -2.26
CCDC88AQ3V6T2 AC012065.4-201ENST00000602445 679 ntBASIC0.94□□□□□ -2.26
CCDC88AQ3V6T2 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC0.94□□□□□ -2.26
CCDC88AQ3V6T2 AC093648.1-201ENST00000623546 606 ntBASIC0.94□□□□□ -2.26
CCDC88AQ3V6T2 MIR412-201ENST00000362142 91 ntBASIC0.93□□□□□ -2.26
CCDC88AQ3V6T2 SNORA40.2-201ENST00000390847 128 ntBASIC0.93□□□□□ -2.26
CCDC88AQ3V6T2 BTF3L4P2-201ENST00000392798 346 ntBASIC0.93□□□□□ -2.26
CCDC88AQ3V6T2 AL357139.1-201ENST00000407792 426 ntBASIC0.93□□□□□ -2.26
CCDC88AQ3V6T2 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.93□□□□□ -2.26
CCDC88AQ3V6T2 RNA5SP100-201ENST00000410903 110 ntBASIC0.93□□□□□ -2.26
CCDC88AQ3V6T2 RNA5SP59-201ENST00000410922 110 ntBASIC0.93□□□□□ -2.26
CCDC88AQ3V6T2 AL050338.2-202ENST00000431609 956 ntTSL 2 BASIC0.93□□□□□ -2.26
CCDC88AQ3V6T2 AC010153.1-201ENST00000432862 727 ntBASIC0.93□□□□□ -2.26
CCDC88AQ3V6T2 5S_rRNA.3-201ENST00000517021 110 ntBASIC0.93□□□□□ -2.26
CCDC88AQ3V6T2 AC034114.1-201ENST00000520293 285 ntBASIC0.93□□□□□ -2.26
CCDC88AQ3V6T2 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC0.93□□□□□ -2.26
CCDC88AQ3V6T2 OR5B19P-201ENST00000531766 928 ntBASIC0.93□□□□□ -2.26
CCDC88AQ3V6T2 AC090680.2-201ENST00000550279 742 ntTSL 3 BASIC0.93□□□□□ -2.26
CCDC88AQ3V6T2 AC013244.2-201ENST00000603396 103 ntBASIC0.93□□□□□ -2.26
CCDC88AQ3V6T2 5S_rRNA.19-201ENST00000612131 110 ntBASIC0.93□□□□□ -2.26
CCDC88AQ3V6T2 AC018926.1-201ENST00000616335 435 ntBASIC0.93□□□□□ -2.26
CCDC88AQ3V6T2 MIR2909-201ENST00000617113 69 ntBASIC0.93□□□□□ -2.26
CCDC88AQ3V6T2 AL121895.2-201ENST00000619558 447 ntBASIC0.93□□□□□ -2.26
CCDC88AQ3V6T2 AL121890.5-201ENST00000620848 304 ntBASIC0.93□□□□□ -2.26
CCDC88AQ3V6T2 5S_rRNA.18-201ENST00000621941 110 ntBASIC0.93□□□□□ -2.26
CCDC88AQ3V6T2 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC0.93□□□□□ -2.26
CCDC88AQ3V6T2 AC008993.2-201ENST00000631744 806 ntBASIC0.93□□□□□ -2.26
CCDC88AQ3V6T2 U6.99-201ENST00000637524 83 ntBASIC0.93□□□□□ -2.26
CCDC88AQ3V6T2 LINC02555-201ENST00000563933 1951 ntBASIC0.93□□□□□ -2.26
CCDC88AQ3V6T2 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC0.93□□□□□ -2.26
CCDC88AQ3V6T2 SNORA63.3-201ENST00000362682 132 ntBASIC0.92□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 102.8 ms