Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC3.12□□□□□ -1.91
PTCHD3Q3KNS1 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC3.12□□□□□ -1.91
PTCHD3Q3KNS1 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC3.12□□□□□ -1.91
PTCHD3Q3KNS1 MIR148B-201ENST00000362252 99 ntBASIC3.12□□□□□ -1.91
PTCHD3Q3KNS1 Y_RNA.5-201ENST00000362334 102 ntBASIC3.12□□□□□ -1.91
PTCHD3Q3KNS1 Y_RNA.28-201ENST00000362554 111 ntBASIC3.12□□□□□ -1.91
PTCHD3Q3KNS1 RNA5SP383-201ENST00000362934 120 ntBASIC3.12□□□□□ -1.91
PTCHD3Q3KNS1 SNORA14A-201ENST00000364773 135 ntBASIC3.12□□□□□ -1.91
PTCHD3Q3KNS1 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
PTCHD3Q3KNS1 RNU6-784P-201ENST00000384330 106 ntBASIC3.12□□□□□ -1.91
PTCHD3Q3KNS1 BX276092.3-201ENST00000424182 230 ntBASIC3.12□□□□□ -1.91
PTCHD3Q3KNS1 AL035666.1-201ENST00000446195 348 ntBASIC3.12□□□□□ -1.91
PTCHD3Q3KNS1 AL118496.2-201ENST00000448300 230 ntBASIC3.12□□□□□ -1.91
PTCHD3Q3KNS1 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC3.12□□□□□ -1.91
PTCHD3Q3KNS1 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC3.12□□□□□ -1.91
PTCHD3Q3KNS1 MED28P2-201ENST00000475771 317 ntBASIC3.12□□□□□ -1.91
PTCHD3Q3KNS1 HMGN2P13-201ENST00000476476 274 ntBASIC3.12□□□□□ -1.91
PTCHD3Q3KNS1 RPS29P2-201ENST00000479278 136 ntBASIC3.12□□□□□ -1.91
PTCHD3Q3KNS1 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC3.12□□□□□ -1.91
PTCHD3Q3KNS1 ACA59.2-201ENST00000517061 156 ntBASIC3.12□□□□□ -1.91
PTCHD3Q3KNS1 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC3.12□□□□□ -1.91
PTCHD3Q3KNS1 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC3.12□□□□□ -1.91
PTCHD3Q3KNS1 MIR2682-201ENST00000580305 110 ntBASIC3.12□□□□□ -1.91
PTCHD3Q3KNS1 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC3.12□□□□□ -1.91
PTCHD3Q3KNS1 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC3.12□□□□□ -1.91
PTCHD3Q3KNS1 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.12□□□□□ -1.91
PTCHD3Q3KNS1 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
PTCHD3Q3KNS1 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC3.11□□□□□ -1.91
PTCHD3Q3KNS1 RNA5-8SP4-201ENST00000365096 150 ntBASIC3.11□□□□□ -1.91
PTCHD3Q3KNS1 RNU6-692P-201ENST00000384496 107 ntBASIC3.11□□□□□ -1.91
PTCHD3Q3KNS1 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC3.11□□□□□ -1.91
PTCHD3Q3KNS1 BTF3L4P2-201ENST00000392798 346 ntBASIC3.11□□□□□ -1.91
PTCHD3Q3KNS1 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
PTCHD3Q3KNS1 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC3.11□□□□□ -1.91
PTCHD3Q3KNS1 HNRNPDLP1-201ENST00000412834 550 ntBASIC3.11□□□□□ -1.91
PTCHD3Q3KNS1 AC243428.1-201ENST00000421099 264 ntBASIC3.11□□□□□ -1.91
PTCHD3Q3KNS1 PMCHL1-202ENST00000423102 261 ntBASIC3.11□□□□□ -1.91
PTCHD3Q3KNS1 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC3.11□□□□□ -1.91
PTCHD3Q3KNS1 RPL23AP50-201ENST00000434149 455 ntBASIC3.11□□□□□ -1.91
PTCHD3Q3KNS1 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC3.11□□□□□ -1.91
PTCHD3Q3KNS1 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
PTCHD3Q3KNS1 AC243964.1-201ENST00000441814 261 ntBASIC3.11□□□□□ -1.91
PTCHD3Q3KNS1 AC007969.2-201ENST00000441891 191 ntBASIC3.11□□□□□ -1.91
PTCHD3Q3KNS1 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC3.11□□□□□ -1.91
PTCHD3Q3KNS1 MIR2053-201ENST00000459295 91 ntBASIC3.11□□□□□ -1.91
PTCHD3Q3KNS1 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC3.11□□□□□ -1.91
PTCHD3Q3KNS1 AC022447.4-201ENST00000504053 364 ntBASIC3.11□□□□□ -1.91
PTCHD3Q3KNS1 AC022493.2-201ENST00000506122 481 ntBASIC3.11□□□□□ -1.91
PTCHD3Q3KNS1 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC3.11□□□□□ -1.91
PTCHD3Q3KNS1 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC3.11□□□□□ -1.91
PTCHD3Q3KNS1 RNA5SP217-201ENST00000515959 91 ntBASIC3.11□□□□□ -1.91
PTCHD3Q3KNS1 SNORD59.2-201ENST00000516873 68 ntBASIC3.11□□□□□ -1.91
PTCHD3Q3KNS1 SNORA31.23-201ENST00000517219 133 ntBASIC3.11□□□□□ -1.91
PTCHD3Q3KNS1 AC068657.1-201ENST00000520807 306 ntBASIC3.11□□□□□ -1.91
PTCHD3Q3KNS1 CKS1BP7-201ENST00000522230 235 ntBASIC3.11□□□□□ -1.91
PTCHD3Q3KNS1 AP000889.1-201ENST00000530968 660 ntBASIC3.11□□□□□ -1.91
PTCHD3Q3KNS1 AC025281.1-201ENST00000567026 265 ntBASIC3.11□□□□□ -1.91
PTCHD3Q3KNS1 AC091925.1-201ENST00000623204 462 ntBASIC3.11□□□□□ -1.91
PTCHD3Q3KNS1 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC3.11□□□□□ -1.91
PTCHD3Q3KNS1 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
PTCHD3Q3KNS1 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC3.1□□□□□ -1.91
PTCHD3Q3KNS1 RNU6-858P-201ENST00000362436 107 ntBASIC3.1□□□□□ -1.91
PTCHD3Q3KNS1 U3.6-201ENST00000363622 211 ntBASIC3.1□□□□□ -1.91
PTCHD3Q3KNS1 Y_RNA.162-201ENST00000363683 102 ntBASIC3.1□□□□□ -1.91
PTCHD3Q3KNS1 IARS-201ENST00000375627 697 ntTSL 3 BASIC3.1□□□□□ -1.91
PTCHD3Q3KNS1 AC117470.1-201ENST00000381974 330 ntBASIC3.1□□□□□ -1.91
PTCHD3Q3KNS1 RNU6-750P-201ENST00000390946 107 ntBASIC3.1□□□□□ -1.91
PTCHD3Q3KNS1 RNA5SP390-201ENST00000410191 113 ntBASIC3.1□□□□□ -1.91
PTCHD3Q3KNS1 AC096664.2-201ENST00000411843 406 ntBASIC3.1□□□□□ -1.91
PTCHD3Q3KNS1 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC3.1□□□□□ -1.91
PTCHD3Q3KNS1 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC3.1□□□□□ -1.91
PTCHD3Q3KNS1 RPL17P19-201ENST00000489069 552 ntBASIC3.1□□□□□ -1.91
PTCHD3Q3KNS1 RNU5F-8P-201ENST00000515941 111 ntBASIC3.1□□□□□ -1.91
PTCHD3Q3KNS1 RNU5B-3P-201ENST00000516601 115 ntBASIC3.1□□□□□ -1.91
PTCHD3Q3KNS1 RNU6-711P-201ENST00000517255 106 ntBASIC3.1□□□□□ -1.91
PTCHD3Q3KNS1 RNU6-988P-201ENST00000519081 107 ntBASIC3.1□□□□□ -1.91
PTCHD3Q3KNS1 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC3.1□□□□□ -1.91
PTCHD3Q3KNS1 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC3.1□□□□□ -1.91
PTCHD3Q3KNS1 AC005034.5-201ENST00000604219 466 ntBASIC3.1□□□□□ -1.91
PTCHD3Q3KNS1 AC091152.3-201ENST00000604227 325 ntBASIC3.1□□□□□ -1.91
PTCHD3Q3KNS1 RNU6-91P-201ENST00000607774 107 ntBASIC3.1□□□□□ -1.91
PTCHD3Q3KNS1 PART1_1.1-201ENST00000611761 217 ntBASIC3.1□□□□□ -1.91
PTCHD3Q3KNS1 uc_338.25-201ENST00000613756 156 ntBASIC3.1□□□□□ -1.91
PTCHD3Q3KNS1 AC241585.2-209ENST00000638217 143 ntBASIC3.1□□□□□ -1.91
PTCHD3Q3KNS1 MAPK10-322ENST00000641485 4530 ntBASIC3.1□□□□□ -1.91
PTCHD3Q3KNS1 AL353743.1-202ENST00000431724 1695 ntBASIC3.1□□□□□ -1.91
PTCHD3Q3KNS1 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
PTCHD3Q3KNS1 MTND5P9-201ENST00000503854 1755 ntBASIC3.1□□□□□ -1.91
PTCHD3Q3KNS1 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
PTCHD3Q3KNS1 AC008669.1-201ENST00000565823 2178 ntBASIC3.1□□□□□ -1.91
PTCHD3Q3KNS1 ZNF299P-201ENST00000406845 1804 ntBASIC3.09□□□□□ -1.91
PTCHD3Q3KNS1 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.09□□□□□ -1.91
PTCHD3Q3KNS1 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC3.09□□□□□ -1.91
PTCHD3Q3KNS1 Y_RNA.31-201ENST00000362574 102 ntBASIC3.09□□□□□ -1.91
PTCHD3Q3KNS1 SNORD50.1-201ENST00000362987 71 ntBASIC3.09□□□□□ -1.91
PTCHD3Q3KNS1 SNORA33.2-201ENST00000365413 134 ntBASIC3.09□□□□□ -1.91
PTCHD3Q3KNS1 RNU6-805P-201ENST00000365643 106 ntBASIC3.09□□□□□ -1.91
PTCHD3Q3KNS1 RNU6-748P-201ENST00000384648 107 ntBASIC3.09□□□□□ -1.91
PTCHD3Q3KNS1 snosnR66.1-201ENST00000391095 99 ntBASIC3.09□□□□□ -1.91
PTCHD3Q3KNS1 SNORA48.5-201ENST00000391143 135 ntBASIC3.09□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 239.1 ms